Wall clock time and date at job start Fri Apr 10 2020 14:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47408 * 2 1 4 4 N 1.46496 * 109.47387 * 120.00538 * 2 1 3 5 5 C 1.34774 * 120.00012 * 274.99885 * 4 2 1 6 6 O 1.21682 * 119.99867 * 359.97438 * 5 4 2 7 7 C 1.46375 * 120.00122 * 179.97438 * 5 4 2 8 8 H 1.08009 * 119.99909 * 0.02562 * 7 5 4 9 9 C 1.40040 * 120.00194 * 179.97438 * 7 5 4 10 10 N 1.30672 * 119.99940 * 0.02562 * 9 7 5 11 11 Si 1.86803 * 120.00157 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47264 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.46974 * 120.00071 * 11 9 7 14 14 H 1.48496 * 109.47628 * 240.00278 * 11 9 7 15 15 C 1.53005 * 109.46722 * 240.00514 * 2 1 3 16 16 H 1.09000 * 109.47198 * 299.99578 * 15 2 1 17 17 C 1.50703 * 109.47091 * 60.00014 * 15 2 1 18 18 C 1.38235 * 120.00726 * 53.29150 * 17 15 2 19 19 C 1.38224 * 120.01130 * 179.97438 * 18 17 15 20 20 C 1.38255 * 120.02585 * 0.04067 * 19 18 17 21 21 C 1.38196 * 120.01549 * 359.97438 * 20 19 18 22 22 C 1.38333 * 120.00339 * 233.01491 * 17 15 2 23 23 Cl 1.73599 * 120.01353 * 359.97438 * 22 17 15 24 24 N 1.46499 * 109.46999 * 179.97438 * 15 2 1 25 25 C 1.34940 * 126.04246 * 275.90880 * 24 15 2 26 26 C 1.35316 * 107.75091 * 179.97438 * 25 24 15 27 27 C 1.39868 * 107.91646 * 359.97438 * 26 25 24 28 28 N 1.30836 * 108.20624 * 359.74622 * 27 26 25 29 29 H 1.08992 * 109.47352 * 59.99662 * 1 2 3 30 30 H 1.09000 * 109.46939 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46878 * 299.99572 * 1 2 3 32 32 H 0.97006 * 120.00008 * 94.99713 * 4 2 1 33 33 H 0.97003 * 119.99988 * 179.97438 * 10 9 7 34 34 H 1.08001 * 119.99372 * 359.97438 * 18 17 15 35 35 H 1.07998 * 119.98208 * 180.02562 * 19 18 17 36 36 H 1.08005 * 119.99614 * 179.97438 * 20 19 18 37 37 H 1.08005 * 120.00470 * 180.02562 * 21 20 19 38 38 H 1.08005 * 126.12662 * 359.94869 * 25 24 15 39 39 H 1.07997 * 126.04497 * 179.97438 * 26 25 24 40 40 H 1.08005 * 125.89664 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1472 -0.0185 2.3571 6 8 1.8582 1.1623 2.4117 7 6 2.6346 -0.7087 3.5523 8 1 2.8915 -1.7567 3.5037 9 6 2.7689 -0.0101 4.7585 10 7 2.4586 1.2579 4.8172 11 14 3.3903 -0.8911 6.2840 12 1 3.6694 -2.3122 5.9557 13 1 4.6372 -0.2392 6.7587 14 1 2.3590 -0.8223 7.3501 15 6 2.0399 -0.7212 -1.2494 16 1 1.6766 -1.7489 -1.2494 17 6 1.5375 -0.0106 -2.4798 18 6 1.7534 1.3464 -2.6310 19 6 1.2931 1.9981 -3.7597 20 6 0.6159 1.2934 -4.7376 21 6 0.3992 -0.0632 -4.5874 22 6 0.8653 -0.7174 -3.4607 23 17 0.6007 -2.4230 -3.2751 24 7 3.5049 -0.7207 -1.2497 25 6 4.2984 0.2756 -1.6954 26 6 5.5834 -0.1114 -1.5218 27 6 5.5748 -1.3878 -0.9499 28 7 4.3295 -1.7517 -0.7810 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 2.2491 -1.6319 1.1524 33 1 2.5513 1.7417 5.6528 34 1 2.2818 1.8974 -1.8671 35 1 1.4624 3.0582 -3.8776 36 1 0.2561 1.8032 -5.6192 37 1 -0.1295 -0.6136 -5.3516 38 1 3.9673 1.2138 -2.1158 39 1 6.4606 0.4636 -1.7793 40 1 6.4458 -1.9704 -0.6884 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585087589.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:51:40 Heat of formation + Delta-G solvation = 41.248658 kcal Electronic energy + Delta-G solvation = -26516.739924 eV Core-core repulsion = 22744.262415 eV Total energy + Delta-G solvation = -3772.477509 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 333.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.35274 -40.57995 -39.52143 -37.55850 -37.03612 -34.72601 -33.92720 -31.90269 -31.77308 -30.99848 -30.79432 -28.21585 -27.27208 -24.33125 -23.65176 -22.79764 -21.85224 -21.62326 -21.00636 -19.37885 -18.39735 -17.99379 -17.45756 -17.20656 -16.49679 -16.10934 -15.79191 -15.65711 -15.39473 -14.99643 -14.86290 -14.66113 -14.47509 -14.31153 -14.24425 -13.64698 -13.49274 -13.38477 -13.16893 -12.90456 -12.80315 -12.75355 -12.65169 -12.54709 -12.48288 -12.03953 -11.97706 -11.77288 -11.54262 -10.96924 -10.36717 -10.06008 -9.88090 -9.79257 -9.57819 -9.42381 -8.31996 -6.87766 -0.05068 0.14654 0.99293 1.05284 1.36059 1.36323 1.53987 1.62318 2.01643 2.21355 2.44502 2.57412 2.81767 3.41762 3.47099 3.57981 3.72586 3.82777 3.94409 4.03843 4.14860 4.23519 4.29438 4.32655 4.46813 4.57310 4.66299 4.71047 4.80826 4.87799 4.91722 5.12863 5.15847 5.18112 5.27932 5.28935 5.37616 5.74818 5.80900 5.84482 6.09858 6.16006 6.24097 6.83257 6.84631 7.46372 8.46019 8.64475 Molecular weight = 333.10amu Principal moments of inertia in cm(-1) A = 0.014681 B = 0.003861 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.822914 B = 7251.102305 C = 7660.608869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.152 3.848 3 H 0.054 0.946 4 N -0.745 5.745 5 C 0.547 3.453 6 O -0.626 6.626 7 C -0.573 4.573 8 H 0.076 0.924 9 C 0.033 3.967 10 N -0.818 5.818 11 Si 0.994 3.006 12 H -0.253 1.253 13 H -0.266 1.266 14 H -0.265 1.265 15 C 0.202 3.798 16 H 0.110 0.890 17 C -0.102 4.102 18 C -0.107 4.107 19 C -0.105 4.105 20 C -0.086 4.086 21 C -0.109 4.109 22 C -0.028 4.028 23 Cl -0.070 7.070 24 N -0.360 5.360 25 C 0.039 3.961 26 C -0.282 4.282 27 C 0.033 3.967 28 N -0.322 5.322 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.036 0.964 32 H 0.388 0.612 33 H 0.274 0.726 34 H 0.125 0.875 35 H 0.161 0.839 36 H 0.172 0.828 37 H 0.159 0.841 38 H 0.187 0.813 39 H 0.169 0.831 40 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.103 -1.695 -21.698 21.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.045 3.955 3 H 0.073 0.927 4 N -0.398 5.398 5 C 0.352 3.648 6 O -0.513 6.513 7 C -0.610 4.610 8 H 0.094 0.906 9 C -0.182 4.182 10 N -0.447 5.447 11 Si 0.813 3.187 12 H -0.176 1.176 13 H -0.191 1.191 14 H -0.189 1.189 15 C 0.099 3.901 16 H 0.128 0.872 17 C -0.105 4.105 18 C -0.125 4.125 19 C -0.123 4.123 20 C -0.104 4.104 21 C -0.127 4.127 22 C -0.056 4.056 23 Cl -0.041 7.041 24 N -0.141 5.141 25 C -0.106 4.106 26 C -0.311 4.311 27 C -0.153 4.153 28 N -0.143 5.143 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.221 0.779 33 H 0.084 0.916 34 H 0.143 0.857 35 H 0.179 0.821 36 H 0.190 0.810 37 H 0.176 0.824 38 H 0.204 0.796 39 H 0.186 0.814 40 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -2.275 -1.772 -21.134 21.329 hybrid contribution 0.886 -0.180 0.878 1.260 sum -1.388 -1.952 -20.256 20.397 Atomic orbital electron populations 1.22012 0.94274 1.02297 1.01753 1.20918 0.94578 0.95892 0.84135 0.92745 1.45808 1.72036 1.13045 1.08946 1.18419 0.77374 0.85957 0.83069 1.90532 1.56989 1.18124 1.85640 1.21384 1.47317 0.97902 0.94390 0.90591 1.26869 0.92758 0.95148 1.03410 1.70174 1.36575 1.10321 1.27676 0.85033 0.78406 0.79204 0.76040 1.17603 1.19114 1.18944 1.20320 0.75390 1.01742 0.92655 0.87195 1.19336 1.01895 0.94868 0.94389 1.21246 0.99663 0.92368 0.99240 1.21607 0.96404 1.01888 0.92380 1.21641 0.96151 0.92749 0.99870 1.21399 0.99742 0.95731 0.95855 1.20957 1.02458 0.85125 0.97015 1.98380 1.95172 1.13281 1.97281 1.48651 1.05399 1.12962 1.47087 1.23031 0.91689 0.95529 1.00388 1.21788 0.97288 0.98679 1.13312 1.24361 0.95390 0.96933 0.98595 1.77271 1.02716 1.12586 1.21755 0.90134 0.91740 0.94440 0.77923 0.91558 0.85679 0.82123 0.81017 0.82358 0.79631 0.81364 0.77830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.22 9.24 71.98 0.66 -4.56 16 2 C 0.15 6.06 2.11 44.99 0.10 6.15 16 3 H 0.05 2.46 6.48 -2.39 -0.02 2.45 16 4 N -0.75 -36.00 4.90 -446.83 -2.19 -38.19 16 5 C 0.55 32.91 7.71 86.36 0.67 33.57 16 6 O -0.63 -42.26 14.68 -4.29 -0.06 -42.33 16 7 C -0.57 -34.24 9.54 24.83 0.24 -34.00 16 8 H 0.08 4.24 7.85 -2.91 -0.02 4.22 16 9 C 0.03 1.93 5.50 85.30 0.47 2.40 16 10 N -0.82 -50.97 11.83 21.83 0.26 -50.71 16 11 Si 0.99 42.76 29.56 68.60 2.03 44.79 16 12 H -0.25 -10.32 7.11 99.48 0.71 -9.61 16 13 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 14 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 15 C 0.20 6.53 2.53 44.25 0.11 6.64 16 16 H 0.11 3.65 6.21 -2.39 -0.01 3.64 16 17 C -0.10 -2.60 3.46 -19.84 -0.07 -2.67 16 18 C -0.11 -2.34 7.22 22.27 0.16 -2.18 16 19 C -0.11 -1.54 10.05 22.27 0.22 -1.31 16 20 C -0.09 -1.02 10.04 22.26 0.22 -0.79 16 21 C -0.11 -1.67 9.83 22.29 0.22 -1.45 16 22 C -0.03 -0.62 6.31 22.32 0.14 -0.48 16 23 Cl -0.07 -1.63 27.02 -2.72 -0.07 -1.71 16 24 N -0.36 -12.39 3.35 -331.05 -1.11 -13.50 16 25 C 0.04 1.21 10.27 83.54 0.86 2.07 16 26 C -0.28 -8.15 10.80 21.99 0.24 -7.91 16 27 C 0.03 1.03 12.02 85.24 1.02 2.05 16 28 N -0.32 -11.88 12.58 -57.02 -0.72 -12.60 16 29 H 0.08 2.41 7.19 -2.39 -0.02 2.40 16 30 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.39 17.93 8.58 -92.70 -0.80 17.13 16 33 H 0.27 15.42 8.29 -92.71 -0.77 14.65 16 34 H 0.13 3.03 5.93 -2.91 -0.02 3.01 16 35 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 36 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 37 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 38 H 0.19 4.67 5.40 -2.91 -0.02 4.65 16 39 H 0.17 3.78 8.06 -2.91 -0.02 3.76 16 40 H 0.21 4.89 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -82.04 354.39 3.69 -78.34 By element: Atomic # 1 Polarization: 38.09 SS G_CDS: 0.30 Total: 38.38 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: 5.26 Total: -2.48 kcal Atomic # 7 Polarization: -111.24 SS G_CDS: -3.76 Total: -115.00 kcal Atomic # 8 Polarization: -42.26 SS G_CDS: -0.06 Total: -42.33 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.07 Total: -1.71 kcal Total: -82.04 3.69 -78.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585087589.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.592 kcal (2) G-P(sol) polarization free energy of solvation -82.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds