Wall clock time and date at job start Fri Apr 10 2020 14:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31288 * 1 3 3 Si 1.86796 * 120.00043 * 2 1 4 4 H 1.48496 * 109.47205 * 275.23746 * 3 2 1 5 5 H 1.48496 * 109.47206 * 35.24195 * 3 2 1 6 6 H 1.48510 * 109.46913 * 155.23691 * 3 2 1 7 7 C 1.39028 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99858 * 340.67025 * 7 2 1 9 9 N 1.37164 * 119.99855 * 160.67348 * 7 2 1 10 10 C 1.34742 * 119.86213 * 314.69784 * 9 7 2 11 11 O 1.21870 * 120.61679 * 359.95342 * 10 9 7 12 12 C 1.42781 * 118.76437 * 179.97438 * 10 9 7 13 13 C 1.45609 * 129.88600 * 179.69475 * 12 10 9 14 14 C 1.48216 * 122.80982 * 0.02562 * 13 12 10 15 15 C 1.39432 * 120.13146 * 309.72344 * 14 13 12 16 16 C 1.37987 * 119.86993 * 179.74586 * 15 14 13 17 17 C 1.38346 * 120.12912 * 0.54951 * 16 15 14 18 18 C 1.38337 * 120.26203 * 359.70010 * 17 16 15 19 19 C 1.37994 * 120.13148 * 0.02562 * 18 17 16 20 20 C 1.33398 * 114.38212 * 179.81338 * 13 12 10 21 21 S 1.75304 * 111.16335 * 0.46378 * 20 13 12 22 22 C 1.39023 * 117.90335 * 0.02562 * 12 10 9 23 23 N 1.35060 * 119.53901 * 359.97214 * 22 12 10 24 24 C 1.29988 * 121.73793 * 0.05287 * 23 22 12 25 25 C 1.50699 * 119.10985 * 179.97438 * 24 23 22 26 26 Cl 1.80298 * 109.47255 * 359.97317 * 25 24 23 27 27 H 0.96999 * 119.99518 * 0.02562 * 1 2 3 28 28 H 1.08008 * 120.06240 * 359.97438 * 15 14 13 29 29 H 1.08005 * 119.93438 * 180.27321 * 16 15 14 30 30 H 1.07997 * 119.86576 * 179.72472 * 17 16 15 31 31 H 1.07998 * 119.93674 * 180.02562 * 18 17 16 32 32 H 1.08002 * 120.06814 * 180.02562 * 19 18 17 33 33 H 1.08002 * 124.41864 * 180.16334 * 20 13 12 34 34 H 1.09000 * 109.47319 * 119.97502 * 25 24 23 35 35 H 1.09004 * 109.46993 * 239.97280 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 2.3837 2.1103 -1.3942 5 1 1.5041 2.6181 0.8079 6 1 3.5955 1.4106 0.5865 7 6 2.0080 -1.2041 0.0005 8 1 1.5135 -2.1128 0.3105 9 7 3.3216 -1.2377 -0.3926 10 6 3.7061 -0.5817 -1.5050 11 8 2.8965 0.0426 -2.1684 12 6 5.0794 -0.6321 -1.8923 13 6 5.7502 -0.0277 -3.0347 14 6 5.0383 0.7954 -4.0409 15 6 3.8711 0.3185 -4.6362 16 6 3.2098 1.0916 -5.5685 17 6 3.7088 2.3328 -5.9211 18 6 4.8692 2.8091 -5.3376 19 6 5.5362 2.0474 -4.4000 20 6 7.0599 -0.2731 -3.0974 21 16 7.5795 -1.2818 -1.7611 22 6 5.9539 -1.3616 -1.0949 23 7 5.4854 -1.9902 0.0048 24 6 4.2314 -1.9340 0.3424 25 6 3.7726 -2.6585 1.5816 26 17 5.1783 -3.4872 2.3484 27 1 -0.4849 0.8401 -0.0004 28 1 3.4834 -0.6526 -4.3655 29 1 2.3032 0.7250 -6.0271 30 1 3.1902 2.9323 -6.6545 31 1 5.2538 3.7789 -5.6165 32 1 6.4418 2.4204 -3.9448 33 1 7.7138 0.0969 -3.8732 34 1 3.3455 -1.9427 2.2839 35 1 3.0180 -3.3975 1.3120 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003336052.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:54:48 Heat of formation + Delta-G solvation = 48.227990 kcal Electronic energy + Delta-G solvation = -25421.704805 eV Core-core repulsion = 21730.504916 eV Total energy + Delta-G solvation = -3691.199889 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 346.028 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.08554 -38.88680 -36.92577 -36.40051 -35.49596 -33.93642 -32.44318 -30.92279 -30.58799 -29.49417 -27.20269 -26.17306 -23.80487 -22.62926 -22.25683 -21.79221 -19.68499 -18.66320 -18.30581 -16.86116 -16.39836 -16.19078 -15.51812 -15.13003 -14.92525 -14.46467 -14.08983 -13.94346 -13.82885 -13.38463 -13.26015 -13.16570 -13.01768 -12.68969 -12.63857 -12.45944 -12.21678 -11.84266 -11.34761 -11.17611 -10.99142 -10.71708 -10.52301 -10.43025 -10.25458 -10.10400 -9.59310 -9.37979 -9.16283 -8.96009 -8.60666 -8.44649 -7.84112 -7.38196 -7.00681 -4.85917 0.85129 1.45657 1.66422 1.77700 2.29623 2.37990 2.39672 2.66153 3.07211 3.10727 3.23760 3.72314 3.92416 4.14142 4.24994 4.40891 4.66435 5.05180 5.13682 5.23188 5.26365 5.33385 5.43614 5.44557 5.65778 5.74007 5.76594 5.90675 6.04342 6.27502 6.30430 6.42504 6.50141 6.76056 6.84952 6.95130 7.02504 7.18595 7.31142 7.61580 8.06080 8.31778 8.57649 8.95465 9.97631 Molecular weight = 346.03amu Principal moments of inertia in cm(-1) A = 0.010508 B = 0.005899 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.941992 B = 4745.746589 C = 6800.195282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.112 3.888 3 Si 0.895 3.105 4 H -0.242 1.242 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.373 4.373 8 H 0.126 0.874 9 N -0.343 5.343 10 C 0.508 3.492 11 O -0.511 6.511 12 C -0.260 4.260 13 C 0.015 3.985 14 C -0.028 4.028 15 C -0.055 4.055 16 C -0.123 4.123 17 C -0.121 4.121 18 C -0.132 4.132 19 C -0.108 4.108 20 C -0.242 4.242 21 S 0.140 5.860 22 C 0.100 3.900 23 N -0.510 5.510 24 C 0.330 3.670 25 C 0.042 3.958 26 Cl -0.154 7.154 27 H 0.290 0.710 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.167 0.833 34 H 0.127 0.873 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.517 0.167 -3.544 9.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.108 4.108 3 Si 0.721 3.279 4 H -0.166 1.166 5 H -0.214 1.214 6 H -0.195 1.195 7 C -0.501 4.501 8 H 0.144 0.856 9 N -0.045 5.045 10 C 0.307 3.693 11 O -0.390 6.390 12 C -0.277 4.277 13 C 0.003 3.997 14 C -0.030 4.030 15 C -0.074 4.074 16 C -0.141 4.141 17 C -0.140 4.140 18 C -0.150 4.150 19 C -0.126 4.126 20 C -0.376 4.376 21 S 0.400 5.600 22 C -0.141 4.141 23 N -0.238 5.238 24 C 0.066 3.934 25 C -0.023 4.023 26 Cl -0.127 7.127 27 H 0.100 0.900 28 H 0.140 0.860 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.184 0.816 34 H 0.145 0.855 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.842 -0.378 -3.138 10.337 hybrid contribution -1.649 1.736 -0.812 2.528 sum 8.193 1.359 -3.949 9.196 Atomic orbital electron populations 1.69640 1.06993 1.30313 1.36176 1.25307 0.95098 0.99965 0.90391 0.86485 0.79664 0.81416 0.80325 1.16607 1.21384 1.19498 1.19447 0.83080 0.98278 1.49253 0.85650 1.42549 1.09667 1.35051 1.17218 1.16835 0.87960 0.83477 0.80995 1.90788 1.54160 1.42251 1.51770 1.20504 0.94673 1.11023 1.01463 1.17965 0.91707 0.96919 0.93149 1.18397 0.95421 0.93896 0.95284 1.21150 0.92674 1.00081 0.93484 1.21031 0.99693 0.94887 0.98528 1.21111 0.96490 0.96155 1.00198 1.20916 0.96413 0.99595 0.98085 1.21124 0.99957 0.93719 0.97845 1.24971 0.98031 1.09586 1.05022 1.83611 1.04407 1.52182 1.19810 1.23456 0.98041 0.97256 0.95323 1.67677 1.11513 1.27539 1.17067 1.22623 0.84123 0.94696 0.91911 1.22877 0.89000 0.98500 0.91893 1.98701 1.50445 1.80950 1.82647 0.89953 0.86007 0.86273 0.86577 0.86418 0.86315 0.81598 0.85541 0.86238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.75 13.95 55.50 0.77 -19.98 16 2 C 0.11 2.85 4.84 -17.49 -0.08 2.76 16 3 Si 0.90 21.87 25.00 -169.99 -4.25 17.62 16 4 H -0.24 -6.37 6.47 56.52 0.37 -6.01 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.37 -9.01 8.59 -14.87 -0.13 -9.14 16 8 H 0.13 2.93 7.45 -52.49 -0.39 2.54 16 9 N -0.34 -7.97 2.24 -61.03 -0.14 -8.11 16 10 C 0.51 12.41 5.68 -14.52 -0.08 12.33 16 11 O -0.51 -13.44 9.84 5.04 0.05 -13.39 16 12 C -0.26 -5.73 5.99 -104.91 -0.63 -6.35 16 13 C 0.01 0.29 5.50 -104.55 -0.58 -0.29 16 14 C -0.03 -0.52 5.23 -104.91 -0.55 -1.07 16 15 C -0.06 -1.06 7.63 -39.23 -0.30 -1.36 16 16 C -0.12 -2.05 10.03 -39.63 -0.40 -2.45 16 17 C -0.12 -1.79 10.04 -39.51 -0.40 -2.19 16 18 C -0.13 -1.92 10.03 -39.63 -0.40 -2.31 16 19 C -0.11 -1.75 9.59 -39.22 -0.38 -2.12 16 20 C -0.24 -3.84 10.65 29.04 0.31 -3.53 16 21 S 0.14 2.24 23.22 -107.50 -2.50 -0.26 16 22 C 0.10 2.03 7.68 -15.84 -0.12 1.91 16 23 N -0.51 -10.43 9.06 -8.74 -0.08 -10.51 16 24 C 0.33 6.71 7.52 -154.85 -1.16 5.55 16 25 C 0.04 0.67 5.86 36.00 0.21 0.88 16 26 Cl -0.15 -2.37 28.20 -51.86 -1.46 -3.83 16 27 H 0.29 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.12 2.50 7.41 -52.48 -0.39 2.11 16 29 H 0.12 1.75 8.06 -52.48 -0.42 1.32 16 30 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.17 2.10 8.06 -52.49 -0.42 1.67 16 34 H 0.13 1.89 8.07 -51.93 -0.42 1.47 16 35 H 0.12 1.71 7.70 -51.93 -0.40 1.31 16 LS Contribution 326.29 15.07 4.92 4.92 Total: -1.00 -29.03 326.29 -10.25 -39.28 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -2.88 Total: 1.62 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -4.68 Total: -7.37 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.56 Total: -38.59 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.05 Total: -13.39 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.25 Total: 17.62 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -2.50 Total: -0.26 kcal Atomic # 17 Polarization: -2.37 SS G_CDS: -1.46 Total: -3.83 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.03 -10.25 -39.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003336052.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.508 kcal (2) G-P(sol) polarization free energy of solvation -29.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds