Wall clock time and date at job start Fri Apr 10 2020 14:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31288 * 1 3 3 Si 1.86796 * 120.00043 * 2 1 4 4 H 1.48496 * 109.47205 * 275.23746 * 3 2 1 5 5 H 1.48496 * 109.47206 * 35.24195 * 3 2 1 6 6 H 1.48510 * 109.46913 * 155.23691 * 3 2 1 7 7 C 1.39028 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99858 * 340.67025 * 7 2 1 9 9 N 1.37164 * 119.99855 * 160.67348 * 7 2 1 10 10 C 1.34742 * 119.86213 * 314.69784 * 9 7 2 11 11 O 1.21870 * 120.61679 * 359.95342 * 10 9 7 12 12 C 1.42781 * 118.76437 * 179.97438 * 10 9 7 13 13 C 1.45609 * 129.88600 * 179.69475 * 12 10 9 14 14 C 1.48216 * 122.80982 * 0.02562 * 13 12 10 15 15 C 1.39432 * 120.13146 * 309.72344 * 14 13 12 16 16 C 1.37987 * 119.86993 * 179.74586 * 15 14 13 17 17 C 1.38346 * 120.12912 * 0.54951 * 16 15 14 18 18 C 1.38337 * 120.26203 * 359.70010 * 17 16 15 19 19 C 1.37994 * 120.13148 * 0.02562 * 18 17 16 20 20 C 1.33398 * 114.38212 * 179.81338 * 13 12 10 21 21 S 1.75304 * 111.16335 * 0.46378 * 20 13 12 22 22 C 1.39023 * 117.90335 * 0.02562 * 12 10 9 23 23 N 1.35060 * 119.53901 * 359.97214 * 22 12 10 24 24 C 1.29988 * 121.73793 * 0.05287 * 23 22 12 25 25 C 1.50699 * 119.10985 * 179.97438 * 24 23 22 26 26 Cl 1.80298 * 109.47255 * 359.97317 * 25 24 23 27 27 H 0.96999 * 119.99518 * 0.02562 * 1 2 3 28 28 H 1.08008 * 120.06240 * 359.97438 * 15 14 13 29 29 H 1.08005 * 119.93438 * 180.27321 * 16 15 14 30 30 H 1.07997 * 119.86576 * 179.72472 * 17 16 15 31 31 H 1.07998 * 119.93674 * 180.02562 * 18 17 16 32 32 H 1.08002 * 120.06814 * 180.02562 * 19 18 17 33 33 H 1.08002 * 124.41864 * 180.16334 * 20 13 12 34 34 H 1.09000 * 109.47319 * 119.97502 * 25 24 23 35 35 H 1.09004 * 109.46993 * 239.97280 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 2.3837 2.1103 -1.3942 5 1 1.5041 2.6181 0.8079 6 1 3.5955 1.4106 0.5865 7 6 2.0080 -1.2041 0.0005 8 1 1.5135 -2.1128 0.3105 9 7 3.3216 -1.2377 -0.3926 10 6 3.7061 -0.5817 -1.5050 11 8 2.8965 0.0426 -2.1684 12 6 5.0794 -0.6321 -1.8923 13 6 5.7502 -0.0277 -3.0347 14 6 5.0383 0.7954 -4.0409 15 6 3.8711 0.3185 -4.6362 16 6 3.2098 1.0916 -5.5685 17 6 3.7088 2.3328 -5.9211 18 6 4.8692 2.8091 -5.3376 19 6 5.5362 2.0474 -4.4000 20 6 7.0599 -0.2731 -3.0974 21 16 7.5795 -1.2818 -1.7611 22 6 5.9539 -1.3616 -1.0949 23 7 5.4854 -1.9902 0.0048 24 6 4.2314 -1.9340 0.3424 25 6 3.7726 -2.6585 1.5816 26 17 5.1783 -3.4872 2.3484 27 1 -0.4849 0.8401 -0.0004 28 1 3.4834 -0.6526 -4.3655 29 1 2.3032 0.7250 -6.0271 30 1 3.1902 2.9323 -6.6545 31 1 5.2538 3.7789 -5.6165 32 1 6.4418 2.4204 -3.9448 33 1 7.7138 0.0969 -3.8732 34 1 3.3455 -1.9427 2.2839 35 1 3.0180 -3.3975 1.3120 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003336052.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:54:47 Heat of formation + Delta-G solvation = 33.615635 kcal Electronic energy + Delta-G solvation = -25422.338444 eV Core-core repulsion = 21730.504916 eV Total energy + Delta-G solvation = -3691.833528 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 346.028 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.75926 -40.16980 -38.65149 -37.87826 -36.82178 -35.60414 -34.20731 -32.38464 -31.82651 -30.83634 -28.74598 -27.84967 -25.30419 -24.20505 -23.63572 -23.17006 -21.15953 -20.34750 -19.89909 -18.40064 -18.05710 -17.61888 -17.01311 -16.80969 -16.25849 -15.87784 -15.67463 -15.48949 -15.35196 -15.01806 -14.78652 -14.57097 -14.30481 -14.24108 -14.16088 -13.83299 -13.65249 -13.52022 -12.93235 -12.74301 -12.62355 -12.31232 -11.98919 -11.82866 -11.57415 -11.39750 -11.31967 -11.07520 -10.95227 -10.67195 -9.89023 -9.77867 -9.36225 -8.91214 -8.82578 -6.73936 -0.67978 0.11608 0.21083 0.51668 0.71751 0.89543 1.03342 1.11130 1.15008 1.21146 1.27126 2.01389 2.09986 2.44646 2.77365 2.87764 2.98035 3.63074 3.76519 3.86344 4.02698 4.11047 4.17405 4.20915 4.25718 4.32749 4.55445 4.61748 4.65424 4.89212 5.02138 5.09902 5.13947 5.25427 5.43024 5.53232 5.58956 5.70285 5.85339 6.09130 6.27687 6.54042 6.85532 7.19549 8.14006 Molecular weight = 346.03amu Principal moments of inertia in cm(-1) A = 0.010508 B = 0.005899 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.941992 B = 4745.746589 C = 6800.195282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.091 3.909 3 Si 0.929 3.071 4 H -0.277 1.277 5 H -0.271 1.271 6 H -0.281 1.281 7 C -0.382 4.382 8 H 0.126 0.874 9 N -0.363 5.363 10 C 0.491 3.509 11 O -0.544 6.544 12 C -0.277 4.277 13 C -0.021 4.021 14 C -0.050 4.050 15 C -0.084 4.084 16 C -0.138 4.138 17 C -0.120 4.120 18 C -0.127 4.127 19 C -0.114 4.114 20 C -0.213 4.213 21 S 0.225 5.775 22 C 0.066 3.934 23 N -0.509 5.509 24 C 0.340 3.660 25 C 0.042 3.958 26 Cl -0.143 7.143 27 H 0.291 0.709 28 H 0.089 0.911 29 H 0.127 0.873 30 H 0.150 0.850 31 H 0.157 0.843 32 H 0.142 0.858 33 H 0.208 0.792 34 H 0.140 0.860 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.794 0.816 -4.112 12.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.124 4.124 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.197 1.197 6 H -0.206 1.206 7 C -0.509 4.509 8 H 0.144 0.856 9 N -0.067 5.067 10 C 0.291 3.709 11 O -0.425 6.425 12 C -0.293 4.293 13 C -0.033 4.033 14 C -0.052 4.052 15 C -0.103 4.103 16 C -0.156 4.156 17 C -0.138 4.138 18 C -0.144 4.144 19 C -0.132 4.132 20 C -0.348 4.348 21 S 0.486 5.514 22 C -0.172 4.172 23 N -0.236 5.236 24 C 0.075 3.925 25 C -0.023 4.023 26 Cl -0.117 7.117 27 H 0.102 0.898 28 H 0.107 0.893 29 H 0.145 0.855 30 H 0.168 0.832 31 H 0.174 0.826 32 H 0.160 0.840 33 H 0.225 0.775 34 H 0.158 0.842 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 13.171 0.260 -3.684 13.679 hybrid contribution -2.258 1.462 -0.771 2.798 sum 10.912 1.721 -4.455 11.912 Atomic orbital electron populations 1.69659 1.07266 1.30467 1.39592 1.25550 0.95269 1.00877 0.90750 0.86009 0.78907 0.81343 0.78059 1.20385 1.19696 1.20631 1.19362 0.83876 0.97908 1.49771 0.85631 1.42558 1.09843 1.36479 1.17842 1.17358 0.88970 0.83441 0.81168 1.90750 1.55148 1.43787 1.52831 1.20824 0.94053 1.11609 1.02846 1.18118 0.92917 0.98876 0.93368 1.18553 0.95740 0.95218 0.95702 1.21051 0.94128 0.99614 0.95483 1.21266 1.00089 0.95885 0.98388 1.21524 0.96628 0.95294 1.00310 1.21402 0.95691 1.00669 0.96679 1.21450 1.00921 0.92690 0.98176 1.25551 0.97237 1.06916 1.05049 1.83378 1.00068 1.50108 1.17821 1.24179 1.00781 0.97071 0.95156 1.67853 1.11433 1.27187 1.17106 1.23435 0.84061 0.92454 0.92516 1.23054 0.89570 0.99136 0.90511 1.98703 1.50108 1.80633 1.82235 0.89796 0.89320 0.85454 0.83214 0.82568 0.84025 0.77541 0.84187 0.84240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.15 13.95 21.67 0.30 -44.85 16 2 C 0.09 4.81 4.84 84.96 0.41 5.22 16 3 Si 0.93 46.80 25.00 68.60 1.71 48.52 16 4 H -0.28 -15.45 6.47 99.48 0.64 -14.80 16 5 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.28 -14.31 7.11 99.48 0.71 -13.60 16 7 C -0.38 -19.12 8.59 84.05 0.72 -18.39 16 8 H 0.13 6.07 7.45 -2.91 -0.02 6.04 16 9 N -0.36 -17.31 2.24 -465.17 -1.04 -18.36 16 10 C 0.49 24.88 5.68 85.38 0.49 25.36 16 11 O -0.54 -30.29 9.84 -4.89 -0.05 -30.34 16 12 C -0.28 -12.26 5.99 -20.05 -0.12 -12.38 16 13 C -0.02 -0.79 5.50 -19.82 -0.11 -0.90 16 14 C -0.05 -1.86 5.23 -20.05 -0.10 -1.97 16 15 C -0.08 -3.36 7.63 22.50 0.17 -3.19 16 16 C -0.14 -4.68 10.03 22.24 0.22 -4.46 16 17 C -0.12 -3.30 10.04 22.32 0.22 -3.07 16 18 C -0.13 -3.30 10.03 22.24 0.22 -3.08 16 19 C -0.11 -3.44 9.59 22.50 0.22 -3.23 16 20 C -0.21 -6.05 10.65 66.72 0.71 -5.34 16 21 S 0.22 6.39 23.22 -56.49 -1.31 5.08 16 22 C 0.07 2.61 7.68 84.38 0.65 3.26 16 23 N -0.51 -20.24 9.06 -181.55 -1.64 -21.88 16 24 C 0.34 13.77 7.52 137.93 1.04 14.81 16 25 C 0.04 1.30 5.86 71.24 0.42 1.71 16 26 Cl -0.14 -4.15 28.20 -2.72 -0.08 -4.23 16 27 H 0.29 14.68 8.31 -92.71 -0.77 13.91 16 28 H 0.09 4.00 7.41 -2.91 -0.02 3.98 16 29 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 30 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 31 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 32 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 33 H 0.21 4.12 8.06 -2.91 -0.02 4.10 16 34 H 0.14 4.05 8.07 -2.39 -0.02 4.03 16 35 H 0.14 3.84 7.70 -2.39 -0.02 3.83 16 Total: -1.00 -67.06 326.29 4.14 -62.92 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 1.09 Total: 8.78 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: 5.15 Total: -5.63 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -2.39 Total: -85.09 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.05 Total: -30.34 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.71 Total: 48.52 kcal Atomic # 16 Polarization: 6.39 SS G_CDS: -1.31 Total: 5.08 kcal Atomic # 17 Polarization: -4.15 SS G_CDS: -0.08 Total: -4.23 kcal Total: -67.06 4.14 -62.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003336052.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.535 kcal (2) G-P(sol) polarization free energy of solvation -67.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds