Wall clock time and date at job start Fri Apr 10 2020 14:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 120.00025 * 2 1 4 4 C 1.50699 * 109.47200 * 270.00396 * 3 2 1 5 5 H 1.07993 * 119.99845 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99666 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00171 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99567 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.47405 * 89.99856 * 8 6 4 10 10 H 1.48500 * 109.46814 * 210.00059 * 8 6 4 11 11 H 1.48497 * 109.47080 * 329.99650 * 8 6 4 12 12 C 1.34776 * 119.99639 * 180.02562 * 2 1 3 13 13 O 1.21282 * 119.99486 * 179.97438 * 12 2 1 14 14 C 1.50697 * 120.00388 * 0.02562 * 12 2 1 15 15 O 1.45195 * 109.47180 * 179.97438 * 14 12 2 16 16 C 1.34719 * 117.00242 * 180.02562 * 15 14 12 17 17 O 1.21484 * 119.99721 * 359.97438 * 16 15 14 18 18 C 1.47662 * 120.00455 * 179.97438 * 16 15 14 19 19 C 1.39615 * 120.53920 * 359.97438 * 18 16 15 20 20 N 1.31656 * 120.59524 * 180.02562 * 19 18 16 21 21 C 1.32062 * 121.88171 * 359.97438 * 20 19 18 22 22 Cl 1.73596 * 119.47525 * 180.02562 * 21 20 19 23 23 C 1.38632 * 121.04158 * 359.97438 * 21 20 19 24 24 Cl 1.73607 * 120.35875 * 180.02562 * 23 21 20 25 25 C 1.38386 * 119.27863 * 0.02562 * 23 21 20 26 26 H 1.09010 * 109.47233 * 269.99608 * 1 2 3 27 27 H 1.09005 * 109.47382 * 29.99504 * 1 2 3 28 28 H 1.09000 * 109.47603 * 150.00022 * 1 2 3 29 29 H 1.09010 * 109.47148 * 30.00395 * 3 2 1 30 30 H 1.08993 * 109.47290 * 149.99760 * 3 2 1 31 31 H 0.96997 * 120.00010 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.46898 * 59.99721 * 14 12 2 33 33 H 1.08996 * 109.46938 * 300.00017 * 14 12 2 34 34 H 1.07993 * 119.70521 * 359.74130 * 19 18 16 35 35 H 1.08004 * 120.85455 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0958 -2.2416 6 6 3.1269 2.8775 -1.6727 7 7 3.5542 3.6176 -0.6730 8 14 3.4387 3.4165 -3.4338 9 1 2.3091 4.2597 -3.9009 10 1 4.6993 4.1989 -3.4961 11 1 3.5557 2.2192 -4.3045 12 6 2.1388 -1.1672 -0.0005 13 8 3.3516 -1.1672 -0.0010 14 6 1.3853 -2.4723 -0.0017 15 8 2.3288 -3.5759 -0.0027 16 6 1.8140 -4.8208 -0.0043 17 8 0.6096 -4.9800 -0.0045 18 6 2.7134 -5.9919 -0.0060 19 6 4.0992 -5.8221 -0.0064 20 7 4.9022 -6.8654 -0.0084 21 6 4.4389 -8.1021 -0.0095 22 17 5.5545 -9.4321 -0.0115 23 6 3.0758 -8.3549 -0.0082 24 17 2.4862 -9.9878 -0.0091 25 6 2.1903 -7.2914 -0.0061 26 1 -0.3634 -0.0001 1.0277 27 1 -0.3634 0.8901 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 1.6084 2.0284 0.5139 30 1 3.1498 1.1384 0.5138 31 1 4.0310 4.4435 -0.8502 32 1 0.7590 -2.5294 -0.8919 33 1 0.7584 -2.5306 0.8880 34 1 4.5163 -4.8259 -0.0097 35 1 1.1234 -7.4591 -0.0046 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006643101.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:10 Heat of formation + Delta-G solvation = -104.425624 kcal Electronic energy + Delta-G solvation = -24212.313163 eV Core-core repulsion = 20069.307996 eV Total energy + Delta-G solvation = -4143.005167 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 346.032 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.25100 -41.23968 -40.35949 -38.07200 -37.93496 -37.70175 -36.60855 -34.75562 -34.10848 -32.75896 -30.94532 -28.97433 -27.30720 -26.33151 -25.26311 -24.64368 -22.59444 -20.46398 -19.75714 -18.92156 -18.71900 -18.40986 -17.89945 -17.81102 -17.52041 -16.98166 -16.47374 -16.41200 -16.06543 -15.89308 -14.93854 -14.64762 -14.62982 -14.31707 -13.99228 -13.85640 -13.69088 -13.47540 -13.39922 -13.11410 -13.02263 -12.86524 -12.82141 -12.52378 -12.27570 -12.20866 -12.11460 -11.98904 -11.69846 -11.27749 -11.13549 -10.73349 -10.63271 -10.29661 -9.49690 -8.22319 -6.36590 -1.14225 -0.46934 0.31772 0.53605 1.03632 1.09327 1.38429 1.41322 1.51192 1.64980 2.13433 2.30058 2.43493 2.91959 3.08133 3.17041 3.32664 3.36387 3.47062 3.62722 3.93204 4.03639 4.12595 4.41554 4.50889 4.71886 4.78598 4.93225 4.96999 5.06174 5.23020 5.52882 5.79243 6.04793 6.07943 6.32981 6.62588 6.73009 7.23051 7.37947 8.84930 Molecular weight = 346.03amu Principal moments of inertia in cm(-1) A = 0.019198 B = 0.002077 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.154395 B =13477.827671 C =14345.967120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.603 5.603 3 C 0.259 3.741 4 C -0.543 4.543 5 H 0.055 0.945 6 C 0.008 3.992 7 N -0.927 5.927 8 Si 0.967 3.033 9 H -0.264 1.264 10 H -0.283 1.283 11 H -0.273 1.273 12 C 0.497 3.503 13 O -0.576 6.576 14 C 0.065 3.935 15 O -0.338 6.338 16 C 0.526 3.474 17 O -0.505 6.505 18 C -0.164 4.164 19 C 0.189 3.811 20 N -0.484 5.484 21 C 0.206 3.794 22 Cl 0.008 6.992 23 C -0.090 4.090 24 Cl -0.008 7.008 25 C 0.023 3.977 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.031 0.969 30 H 0.002 0.998 31 H 0.267 0.733 32 H 0.126 0.874 33 H 0.131 0.869 34 H 0.195 0.805 35 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.782 -26.843 2.220 27.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.335 5.335 3 C 0.138 3.862 4 C -0.582 4.582 5 H 0.073 0.927 6 C -0.191 4.191 7 N -0.567 5.567 8 Si 0.791 3.209 9 H -0.189 1.189 10 H -0.208 1.208 11 H -0.197 1.197 12 C 0.284 3.716 13 O -0.456 6.456 14 C -0.012 4.012 15 O -0.253 6.253 16 C 0.369 3.631 17 O -0.394 6.394 18 C -0.167 4.167 19 C 0.031 3.969 20 N -0.195 5.195 21 C 0.041 3.959 22 Cl 0.037 6.963 23 C -0.121 4.121 24 Cl 0.021 6.979 25 C -0.003 4.003 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.113 0.887 29 H 0.049 0.951 30 H 0.020 0.980 31 H 0.076 0.924 32 H 0.143 0.857 33 H 0.149 0.851 34 H 0.211 0.789 35 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -5.492 -26.818 2.272 27.469 hybrid contribution -0.340 0.493 -0.684 0.909 sum -5.833 -26.325 1.588 27.010 Atomic orbital electron populations 1.22082 0.77301 1.04516 1.03236 1.48082 1.08687 1.05793 1.70971 1.18838 0.91335 0.79801 0.96201 1.21695 1.36891 1.06566 0.93036 0.92660 1.25839 0.94927 0.96501 1.01846 1.70038 1.38881 1.14798 1.32984 0.85426 0.78012 0.78222 0.79225 1.18864 1.20811 1.19739 1.20565 0.87835 0.85808 0.77409 1.90694 1.16002 1.87717 1.51190 1.22910 0.89926 0.81002 1.07315 1.86561 1.40675 1.14518 1.83556 1.20655 0.86794 0.82855 0.72752 1.90865 1.15774 1.86718 1.46091 1.20038 0.94240 0.91726 1.10737 1.23525 0.88386 0.98276 0.86728 1.67398 1.39729 0.97680 1.14677 1.22143 0.88024 0.90406 0.95339 1.98459 1.62086 1.40194 1.95541 1.21449 0.91710 0.90026 1.08881 1.98434 1.87710 1.15201 1.96573 1.21805 1.02545 0.87834 0.88081 0.90400 0.90895 0.88722 0.95139 0.98001 0.92381 0.85676 0.85087 0.78852 0.79275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.84 10.24 127.77 1.31 3.15 16 2 N -0.60 -23.83 2.86 -851.12 -2.43 -26.26 16 3 C 0.26 13.41 5.16 85.63 0.44 13.85 16 4 C -0.54 -30.33 9.39 25.60 0.24 -30.09 16 5 H 0.06 3.04 7.81 -2.91 -0.02 3.02 16 6 C 0.01 0.45 5.46 84.66 0.46 0.92 16 7 N -0.93 -54.99 13.29 21.45 0.28 -54.71 16 8 Si 0.97 44.00 29.54 68.60 2.03 46.03 16 9 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 12 C 0.50 19.38 7.75 87.66 0.68 20.06 16 13 O -0.58 -28.75 16.08 15.76 0.25 -28.50 16 14 C 0.06 1.69 4.51 71.23 0.32 2.01 16 15 O -0.34 -9.17 9.03 -49.91 -0.45 -9.62 16 16 C 0.53 11.75 7.90 70.31 0.56 12.30 16 17 O -0.51 -11.92 16.21 19.89 0.32 -11.59 16 18 C -0.16 -3.07 5.89 -20.01 -0.12 -3.18 16 19 C 0.19 3.79 10.79 85.05 0.92 4.70 16 20 N -0.48 -10.27 10.32 -185.46 -1.91 -12.19 16 21 C 0.21 3.78 7.28 84.75 0.62 4.40 16 22 Cl 0.01 0.14 28.10 -2.72 -0.08 0.06 16 23 C -0.09 -1.39 6.34 22.40 0.14 -1.25 16 24 Cl -0.01 -0.11 27.97 -2.72 -0.08 -0.18 16 25 C 0.02 0.35 9.51 22.75 0.22 0.56 16 26 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 27 H 0.07 2.03 8.07 -2.38 -0.02 2.01 16 28 H 0.09 1.78 6.44 -2.39 -0.02 1.76 16 29 H 0.03 1.59 8.07 -2.38 -0.02 1.57 16 30 H 0.00 0.11 7.42 -2.39 -0.02 0.09 16 31 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 32 H 0.13 2.68 7.40 -2.39 -0.02 2.66 16 33 H 0.13 2.61 8.10 -2.39 -0.02 2.59 16 34 H 0.19 3.91 7.62 -2.91 -0.02 3.88 16 35 H 0.19 2.11 7.73 -2.91 -0.02 2.09 16 Total: -1.00 -73.08 350.05 4.88 -68.20 By element: Atomic # 1 Polarization: 0.18 SS G_CDS: 1.15 Total: 1.33 kcal Atomic # 6 Polarization: 21.65 SS G_CDS: 5.78 Total: 27.43 kcal Atomic # 7 Polarization: -89.09 SS G_CDS: -4.06 Total: -93.15 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: 0.13 Total: -49.72 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -0.15 Total: -0.12 kcal Total: -73.08 4.88 -68.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006643101.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.226 kcal (2) G-P(sol) polarization free energy of solvation -73.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds