Wall clock time and date at job start Fri Apr 10 2020 14:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00234 * 2 1 4 4 H 1.48493 * 109.47454 * 240.00450 * 3 2 1 5 5 H 1.48507 * 109.47054 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46969 * 119.99866 * 3 2 1 7 7 C 1.37880 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00037 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99816 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46885 * 179.97438 * 9 7 2 11 11 C 1.35772 * 119.84138 * 89.99800 * 10 9 7 12 12 N 1.29970 * 121.83034 * 180.02562 * 11 10 9 13 13 C 1.35100 * 121.72860 * 359.97438 * 12 11 10 14 14 S 1.75847 * 130.61473 * 180.02562 * 13 12 11 15 15 C 1.75303 * 92.33987 * 179.81672 * 14 13 12 16 16 C 1.33292 * 111.17117 * 0.29508 * 15 14 13 17 17 C 1.48235 * 122.80513 * 179.97438 * 16 15 14 18 18 C 1.39421 * 120.11431 * 309.70902 * 17 16 15 19 19 C 1.37985 * 119.88213 * 179.97438 * 18 17 16 20 20 C 1.38448 * 120.11684 * 359.97438 * 19 18 17 21 21 Cl 1.73599 * 119.88021 * 179.97438 * 20 19 18 22 22 C 1.38448 * 120.23140 * 0.02562 * 20 19 18 23 23 C 1.37975 * 120.11700 * 359.97438 * 22 20 19 24 24 C 1.38995 * 119.49690 * 0.02562 * 13 12 11 25 25 C 1.34737 * 119.83645 * 270.01720 * 10 9 7 26 26 O 1.21905 * 120.62751 * 359.97438 * 25 10 9 27 27 H 0.97002 * 120.00004 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47521 * 59.99613 * 9 7 2 29 29 H 1.09000 * 109.46587 * 299.99435 * 9 7 2 30 30 H 1.07999 * 119.08388 * 0.02562 * 11 10 9 31 31 H 1.08001 * 124.41280 * 180.20130 * 15 14 13 32 32 H 1.08000 * 120.05993 * 359.95873 * 18 17 16 33 33 H 1.08004 * 119.94157 * 179.72129 * 19 18 17 34 34 H 1.08002 * 119.93833 * 179.97438 * 22 20 19 35 35 H 1.07997 * 120.05827 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6420 -4.1262 1.1782 12 7 3.4865 -5.1132 1.2233 13 6 3.9738 -5.6832 0.0996 14 16 5.1082 -7.0101 -0.1116 15 6 5.0134 -6.9079 -1.8591 16 6 4.1870 -5.9340 -2.2402 17 6 3.9164 -5.6215 -3.6637 18 6 4.9744 -5.4395 -4.5533 19 6 4.7171 -5.1493 -5.8775 20 6 3.4110 -5.0394 -6.3234 21 17 3.0943 -4.6734 -7.9906 22 6 2.3568 -5.2192 -5.4442 23 6 2.6031 -5.5097 -4.1181 24 6 3.5667 -5.2071 -1.1412 25 6 2.6388 -4.1220 -1.1682 26 8 2.2482 -3.6653 -2.2289 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5572 -0.8896 29 1 0.6240 -2.5567 0.8904 30 1 2.2795 -3.7028 2.1032 31 1 5.5553 -7.5493 -2.5383 32 1 5.9937 -5.5252 -4.2065 33 1 5.5360 -5.0037 -6.5665 34 1 1.3397 -5.1319 -5.7971 35 1 1.7800 -5.6501 -3.4332 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007313915.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:54:43 Heat of formation + Delta-G solvation = 38.140687 kcal Electronic energy + Delta-G solvation = -24433.213589 eV Core-core repulsion = 20741.576282 eV Total energy + Delta-G solvation = -3691.637307 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 346.028 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.16626 -39.27327 -37.07894 -36.86550 -36.05761 -34.10261 -32.57567 -31.04520 -30.64525 -28.82695 -27.92471 -25.05479 -23.83996 -23.43067 -22.57628 -22.09396 -19.92764 -18.70487 -17.46378 -17.00477 -16.96424 -16.28041 -15.80710 -15.38318 -15.28268 -14.97973 -14.35310 -14.25021 -13.72206 -13.55094 -13.43923 -13.23248 -13.02563 -12.90170 -12.55137 -12.09804 -11.99131 -11.77968 -11.50738 -11.44966 -11.15716 -10.95673 -10.88201 -10.79140 -10.45266 -10.19988 -9.81322 -9.43110 -9.26661 -8.92761 -8.71115 -8.70098 -8.19661 -7.66093 -6.33675 -4.41711 0.52478 1.00186 1.25526 1.40678 1.90816 2.03777 2.14177 2.35940 3.17752 3.19752 3.24220 3.30322 3.71310 4.00209 4.24650 4.45392 4.64721 4.78828 4.86623 4.92146 5.03016 5.21584 5.28359 5.35704 5.46963 5.54855 5.74217 5.87530 6.00397 6.07560 6.26243 6.35629 6.46871 6.62205 6.81731 6.83020 6.99169 7.26064 7.59253 7.77359 8.06163 8.41639 8.60877 9.25575 10.74790 Molecular weight = 346.03amu Principal moments of inertia in cm(-1) A = 0.008035 B = 0.004357 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3483.729462 B = 6424.812357 C = 9151.883779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.223 3.777 10 N -0.506 5.506 11 C 0.407 3.593 12 N -0.538 5.538 13 C 0.097 3.903 14 S 0.171 5.829 15 C -0.233 4.233 16 C 0.009 3.991 17 C -0.024 4.024 18 C -0.093 4.093 19 C -0.119 4.119 20 C -0.030 4.030 21 Cl -0.080 7.080 22 C -0.111 4.111 23 C -0.046 4.046 24 C -0.242 4.242 25 C 0.548 3.452 26 O -0.507 6.507 27 H 0.269 0.731 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.209 0.791 31 H 0.173 0.827 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.913 -14.237 -4.672 16.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.105 3.895 10 N -0.221 5.221 11 C 0.118 3.882 12 N -0.264 5.264 13 C -0.137 4.137 14 S 0.434 5.566 15 C -0.368 4.368 16 C -0.003 4.003 17 C -0.027 4.027 18 C -0.111 4.111 19 C -0.137 4.137 20 C -0.057 4.057 21 Cl -0.051 7.051 22 C -0.130 4.130 23 C -0.064 4.064 24 C -0.259 4.259 25 C 0.342 3.658 26 O -0.382 6.382 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.225 0.775 31 H 0.190 0.810 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.582 -15.106 -3.925 17.811 hybrid contribution -0.601 2.364 -1.689 2.967 sum 7.981 -12.741 -5.614 16.048 Atomic orbital electron populations 1.69895 1.06045 1.27920 1.48505 1.24880 0.94944 0.99439 0.94074 0.86437 0.79531 0.81913 0.78979 1.19950 1.20831 1.19863 1.21146 0.93374 0.89689 1.53883 0.92047 1.19987 0.87295 0.81478 1.00752 1.47207 1.38118 1.30687 1.06109 1.24989 0.85973 0.86010 0.91233 1.68013 1.17219 1.14121 1.27035 1.23807 0.99091 0.99170 0.91623 1.83816 1.42454 1.30359 0.99976 1.25122 1.07670 1.05514 0.98465 1.17887 0.96212 0.94697 0.91552 1.18408 0.93494 1.00118 0.90661 1.21084 0.98689 0.99275 0.92076 1.20843 0.94901 1.01881 0.96098 1.20960 0.94905 1.04399 0.85388 1.98352 1.96077 1.93216 1.17472 1.20945 0.98563 1.00609 0.92835 1.21091 0.96228 0.94890 0.94221 1.20689 1.08226 1.04136 0.92852 1.16517 0.82129 0.82940 0.84235 1.90914 1.57788 1.61242 1.28235 0.92089 0.91906 0.92793 0.77465 0.80958 0.85123 0.85039 0.84931 0.85127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.22 13.29 55.43 0.74 -23.48 16 2 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 3 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.54 -14.12 9.38 -34.44 -0.32 -14.45 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.22 5.19 5.12 -5.19 -0.03 5.16 16 10 N -0.51 -10.23 2.57 -121.78 -0.31 -10.55 16 11 C 0.41 6.74 11.48 -90.14 -1.04 5.71 16 12 N -0.54 -8.90 10.42 -12.64 -0.13 -9.04 16 13 C 0.10 1.61 7.68 -15.83 -0.12 1.49 16 14 S 0.17 2.12 23.22 -107.50 -2.50 -0.38 16 15 C -0.23 -2.85 10.65 29.01 0.31 -2.54 16 16 C 0.01 0.13 5.50 -104.57 -0.57 -0.44 16 17 C -0.02 -0.37 5.24 -104.91 -0.55 -0.92 16 18 C -0.09 -1.21 9.59 -39.23 -0.38 -1.59 16 19 C -0.12 -1.50 9.81 -39.60 -0.39 -1.88 16 20 C -0.03 -0.41 6.32 -39.43 -0.25 -0.66 16 21 Cl -0.08 -0.99 28.95 -51.86 -1.50 -2.49 16 22 C -0.11 -1.62 9.81 -39.60 -0.39 -2.01 16 23 C -0.05 -0.73 7.62 -39.24 -0.30 -1.03 16 24 C -0.24 -4.40 5.99 -104.91 -0.63 -5.03 16 25 C 0.55 11.63 7.47 -14.52 -0.11 11.52 16 26 O -0.51 -12.09 13.38 5.00 0.07 -12.02 16 27 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.06 1.64 7.43 -51.93 -0.39 1.26 16 29 H 0.05 1.19 8.01 -51.93 -0.42 0.77 16 30 H 0.21 2.66 8.02 -52.49 -0.42 2.24 16 31 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 32 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 34 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 35 H 0.13 2.19 7.38 -52.49 -0.39 1.80 16 LS Contribution 339.01 15.07 5.11 5.11 Total: -1.00 -30.14 339.01 -11.26 -41.40 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -2.85 Total: 0.69 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -4.86 Total: -4.89 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 0.29 Total: -43.06 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.07 Total: -12.02 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.50 Total: -0.38 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.50 Total: -2.49 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.14 -11.26 -41.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007313915.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.538 kcal (2) G-P(sol) polarization free energy of solvation -30.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds