Wall clock time and date at job start Fri Apr 10 2020 14:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00234 * 2 1 4 4 H 1.48493 * 109.47454 * 240.00450 * 3 2 1 5 5 H 1.48507 * 109.47054 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46969 * 119.99866 * 3 2 1 7 7 C 1.37880 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00037 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99816 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46885 * 179.97438 * 9 7 2 11 11 C 1.35772 * 119.84138 * 89.99800 * 10 9 7 12 12 N 1.29970 * 121.83034 * 180.02562 * 11 10 9 13 13 C 1.35100 * 121.72860 * 359.97438 * 12 11 10 14 14 S 1.75847 * 130.61473 * 180.02562 * 13 12 11 15 15 C 1.75303 * 92.33987 * 179.81672 * 14 13 12 16 16 C 1.33292 * 111.17117 * 0.29508 * 15 14 13 17 17 C 1.48235 * 122.80513 * 179.97438 * 16 15 14 18 18 C 1.39421 * 120.11431 * 309.70902 * 17 16 15 19 19 C 1.37985 * 119.88213 * 179.97438 * 18 17 16 20 20 C 1.38448 * 120.11684 * 359.97438 * 19 18 17 21 21 Cl 1.73599 * 119.88021 * 179.97438 * 20 19 18 22 22 C 1.38448 * 120.23140 * 0.02562 * 20 19 18 23 23 C 1.37975 * 120.11700 * 359.97438 * 22 20 19 24 24 C 1.38995 * 119.49690 * 0.02562 * 13 12 11 25 25 C 1.34737 * 119.83645 * 270.01720 * 10 9 7 26 26 O 1.21905 * 120.62751 * 359.97438 * 25 10 9 27 27 H 0.97002 * 120.00004 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47521 * 59.99613 * 9 7 2 29 29 H 1.09000 * 109.46587 * 299.99435 * 9 7 2 30 30 H 1.07999 * 119.08388 * 0.02562 * 11 10 9 31 31 H 1.08001 * 124.41280 * 180.20130 * 15 14 13 32 32 H 1.08000 * 120.05993 * 359.95873 * 18 17 16 33 33 H 1.08004 * 119.94157 * 179.72129 * 19 18 17 34 34 H 1.08002 * 119.93833 * 179.97438 * 22 20 19 35 35 H 1.07997 * 120.05827 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6420 -4.1262 1.1782 12 7 3.4865 -5.1132 1.2233 13 6 3.9738 -5.6832 0.0996 14 16 5.1082 -7.0101 -0.1116 15 6 5.0134 -6.9079 -1.8591 16 6 4.1870 -5.9340 -2.2402 17 6 3.9164 -5.6215 -3.6637 18 6 4.9744 -5.4395 -4.5533 19 6 4.7171 -5.1493 -5.8775 20 6 3.4110 -5.0394 -6.3234 21 17 3.0943 -4.6734 -7.9906 22 6 2.3568 -5.2192 -5.4442 23 6 2.6031 -5.5097 -4.1181 24 6 3.5667 -5.2071 -1.1412 25 6 2.6388 -4.1220 -1.1682 26 8 2.2482 -3.6653 -2.2289 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5572 -0.8896 29 1 0.6240 -2.5567 0.8904 30 1 2.2795 -3.7028 2.1032 31 1 5.5553 -7.5493 -2.5383 32 1 5.9937 -5.5252 -4.2065 33 1 5.5360 -5.0037 -6.5665 34 1 1.3397 -5.1319 -5.7971 35 1 1.7800 -5.6501 -3.4332 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007313915.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:54:42 Heat of formation + Delta-G solvation = 23.601449 kcal Electronic energy + Delta-G solvation = -24433.844058 eV Core-core repulsion = 20741.576282 eV Total energy + Delta-G solvation = -3692.267776 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 346.028 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.59177 -40.36366 -38.57714 -38.04465 -37.21711 -35.68812 -34.38152 -32.11796 -31.80866 -30.18759 -29.60351 -26.52832 -25.34964 -24.72036 -23.67333 -23.57626 -21.08750 -20.02585 -18.93787 -18.78098 -18.16879 -17.60669 -17.19440 -16.90894 -16.48272 -16.23846 -15.98189 -15.57183 -14.89393 -14.79724 -14.57914 -14.54066 -14.41046 -14.19028 -13.99703 -13.71171 -13.48253 -13.11314 -13.01598 -12.71405 -12.56397 -12.48236 -12.33740 -12.01645 -11.92135 -11.79427 -11.24791 -10.94751 -10.83148 -10.71775 -10.01284 -9.81335 -9.45678 -8.86648 -8.34791 -6.49962 -0.70819 -0.12854 0.12618 0.33473 0.68496 0.81752 1.09398 1.13410 1.36480 1.39280 1.46249 1.70880 2.31975 2.53881 2.65865 2.98366 3.19667 3.48870 3.64891 3.81671 3.90376 3.96518 4.11214 4.21874 4.31254 4.42605 4.67337 4.68598 4.82271 4.91966 4.95927 5.04300 5.19991 5.25854 5.32914 5.51173 5.57424 5.70824 5.76895 5.80640 6.53532 6.66937 6.89417 7.21016 8.72903 Molecular weight = 346.03amu Principal moments of inertia in cm(-1) A = 0.008035 B = 0.004357 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3483.729462 B = 6424.812357 C = 9151.883779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.026 3.974 3 Si 0.963 3.037 4 H -0.284 1.284 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.554 4.554 8 H 0.051 0.949 9 C 0.241 3.759 10 N -0.516 5.516 11 C 0.400 3.600 12 N -0.528 5.528 13 C 0.065 3.935 14 S 0.255 5.745 15 C -0.204 4.204 16 C -0.023 4.023 17 C -0.037 4.037 18 C -0.090 4.090 19 C -0.114 4.114 20 C -0.039 4.039 21 Cl -0.070 7.070 22 C -0.124 4.124 23 C -0.067 4.067 24 C -0.260 4.260 25 C 0.532 3.468 26 O -0.552 6.552 27 H 0.272 0.728 28 H 0.022 0.978 29 H 0.065 0.935 30 H 0.242 0.758 31 H 0.214 0.786 32 H 0.161 0.839 33 H 0.161 0.839 34 H 0.134 0.866 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.031 -15.575 -4.257 19.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.176 4.176 3 Si 0.787 3.213 4 H -0.209 1.209 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.592 4.592 8 H 0.069 0.931 9 C 0.121 3.879 10 N -0.232 5.232 11 C 0.112 3.888 12 N -0.252 5.252 13 C -0.169 4.169 14 S 0.519 5.481 15 C -0.339 4.339 16 C -0.035 4.035 17 C -0.040 4.040 18 C -0.108 4.108 19 C -0.132 4.132 20 C -0.065 4.065 21 Cl -0.041 7.041 22 C -0.143 4.143 23 C -0.086 4.086 24 C -0.277 4.277 25 C 0.328 3.672 26 O -0.431 6.431 27 H 0.081 0.919 28 H 0.040 0.960 29 H 0.083 0.917 30 H 0.257 0.743 31 H 0.231 0.769 32 H 0.179 0.821 33 H 0.179 0.821 34 H 0.152 0.848 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 11.735 -16.497 -3.466 20.540 hybrid contribution -1.486 2.602 -1.834 3.513 sum 10.250 -13.894 -5.301 18.061 Atomic orbital electron populations 1.69984 1.07245 1.28773 1.49318 1.25650 0.95712 1.02523 0.93699 0.85529 0.78458 0.78332 0.78940 1.20944 1.19957 1.18231 1.21363 0.93027 0.91154 1.53679 0.93092 1.19496 0.87383 0.81875 0.99153 1.47050 1.38378 1.30489 1.07285 1.25667 0.86040 0.86132 0.90995 1.68114 1.16565 1.13566 1.26999 1.24414 1.00552 1.00973 0.90962 1.83605 1.38972 1.26561 0.98969 1.25682 1.05098 1.03503 0.99592 1.17946 0.98121 0.96319 0.91118 1.18571 0.93614 1.00602 0.91210 1.21413 0.99400 0.98156 0.91817 1.21211 0.95095 1.00369 0.96512 1.21088 0.95233 1.04397 0.85801 1.98351 1.96125 1.93129 1.16470 1.21024 0.99305 1.01138 0.92806 1.21000 0.96430 0.96741 0.94446 1.20767 1.08212 1.03832 0.94899 1.17125 0.82507 0.83692 0.83885 1.90869 1.59602 1.62936 1.29692 0.91876 0.95968 0.91678 0.74252 0.76906 0.82100 0.82146 0.84794 0.87623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.20 13.29 21.45 0.28 -50.92 16 2 C 0.03 1.38 5.46 84.66 0.46 1.84 16 3 Si 0.96 42.68 29.54 68.60 2.03 44.71 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 6 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 7 C -0.55 -29.74 9.38 25.60 0.24 -29.50 16 8 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 9 C 0.24 11.78 5.12 85.63 0.44 12.22 16 10 N -0.52 -21.78 2.57 -657.36 -1.69 -23.47 16 11 C 0.40 13.26 11.48 180.18 2.07 15.32 16 12 N -0.53 -16.93 10.42 -193.92 -2.02 -18.95 16 13 C 0.06 2.05 7.68 84.37 0.65 2.70 16 14 S 0.26 5.36 23.22 -56.49 -1.31 4.05 16 15 C -0.20 -4.24 10.65 66.70 0.71 -3.53 16 16 C -0.02 -0.70 5.50 -19.83 -0.11 -0.81 16 17 C -0.04 -1.14 5.24 -20.05 -0.10 -1.25 16 18 C -0.09 -2.16 9.59 22.49 0.22 -1.95 16 19 C -0.11 -2.64 9.81 22.26 0.22 -2.42 16 20 C -0.04 -1.04 6.32 22.37 0.14 -0.90 16 21 Cl -0.07 -1.67 28.95 -2.72 -0.08 -1.75 16 22 C -0.12 -3.80 9.81 22.26 0.22 -3.58 16 23 C -0.07 -2.28 7.62 22.49 0.17 -2.11 16 24 C -0.26 -9.53 5.99 -20.05 -0.12 -9.65 16 25 C 0.53 23.79 7.47 85.39 0.64 24.43 16 26 O -0.55 -28.41 13.38 -5.01 -0.07 -28.48 16 27 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 28 H 0.02 1.26 7.43 -2.39 -0.02 1.24 16 29 H 0.07 2.98 8.01 -2.39 -0.02 2.97 16 30 H 0.24 5.96 8.02 -2.91 -0.02 5.94 16 31 H 0.21 2.64 8.06 -2.91 -0.02 2.62 16 32 H 0.16 2.81 8.06 -2.91 -0.02 2.78 16 33 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 34 H 0.13 3.84 8.06 -2.91 -0.02 3.82 16 35 H 0.11 3.98 7.38 -2.91 -0.02 3.96 16 Total: -1.00 -68.96 339.01 4.13 -64.83 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 1.15 Total: 9.15 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 5.84 Total: 0.82 kcal Atomic # 7 Polarization: -89.91 SS G_CDS: -3.43 Total: -93.34 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.07 Total: -28.48 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: 5.36 SS G_CDS: -1.31 Total: 4.05 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -0.08 Total: -1.75 kcal Total: -68.96 4.13 -64.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007313915.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.431 kcal (2) G-P(sol) polarization free energy of solvation -68.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds