Wall clock time and date at job start Fri Apr 10 2020 14:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99814 * 2 1 4 4 H 1.48500 * 109.47128 * 270.00547 * 3 2 1 5 5 H 1.48509 * 109.46937 * 30.00025 * 3 2 1 6 6 H 1.48493 * 109.47415 * 150.00204 * 3 2 1 7 7 C 1.37873 * 120.00305 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99861 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99924 * 0.02562 * 7 2 1 10 10 S 1.81005 * 109.47055 * 180.02562 * 9 7 2 11 11 C 1.76199 * 99.99969 * 179.97438 * 10 9 7 12 12 N 1.32594 * 120.51737 * 359.97438 * 11 10 9 13 13 C 1.32032 * 121.12824 * 180.02562 * 12 11 10 14 14 N 1.31296 * 122.15003 * 359.97438 * 13 12 11 15 15 C 1.33998 * 121.08166 * 0.02562 * 14 13 12 16 16 S 1.75723 * 131.06218 * 179.97438 * 15 14 13 17 17 C 1.75314 * 92.36406 * 179.81449 * 16 15 14 18 18 C 1.33172 * 111.29672 * 0.34384 * 17 16 15 19 19 C 1.48235 * 122.79777 * 179.86330 * 18 17 16 20 20 C 1.39422 * 120.10067 * 309.70658 * 19 18 17 21 21 C 1.37975 * 119.89137 * 180.02562 * 20 19 18 22 22 C 1.38540 * 120.10832 * 0.02562 * 21 20 19 23 23 F 1.35102 * 119.89689 * 179.97438 * 22 21 20 24 24 C 1.38550 * 120.20639 * 0.02562 * 22 21 20 25 25 C 1.37972 * 120.10892 * 359.97438 * 24 22 21 26 26 C 1.39537 * 119.05703 * 0.02562 * 15 14 13 27 27 H 0.97001 * 119.99956 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47151 * 59.99732 * 9 7 2 29 29 H 1.09007 * 109.47171 * 299.99518 * 9 7 2 30 30 H 1.08001 * 118.92929 * 180.02562 * 13 12 11 31 31 H 1.08009 * 124.35045 * 180.22754 * 17 16 15 32 32 H 1.08003 * 120.05798 * 0.02562 * 20 19 18 33 33 H 1.08009 * 119.94626 * 179.72600 * 21 20 19 34 34 H 1.08005 * 119.94307 * 179.97438 * 24 22 21 35 35 H 1.07991 * 120.05484 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 16 2.4275 -3.8748 -0.0014 11 6 1.3074 -5.2350 -0.0021 12 7 -0.0024 -5.0287 -0.0021 13 6 -0.8524 -6.0389 -0.0021 14 7 -0.4517 -7.2893 -0.0026 15 6 0.8523 -7.5978 -0.0026 16 16 1.6705 -9.1529 -0.0026 17 6 3.2543 -8.4013 -0.0083 18 6 3.1594 -7.0730 -0.0026 19 6 4.3450 -6.1832 -0.0026 20 6 5.3696 -6.3836 0.9214 21 6 6.4709 -5.5525 0.9179 22 6 6.5594 -4.5199 -0.0014 23 9 7.6395 -3.7083 -0.0007 24 6 5.5432 -4.3162 -0.9209 25 6 4.4379 -5.1420 -0.9252 26 6 1.7926 -6.5668 -0.0016 27 1 -0.4850 0.8401 0.0004 28 1 0.6248 -2.5562 -0.8919 29 1 0.6242 -2.5575 0.8881 30 1 -1.9121 -5.8301 -0.0026 31 1 4.1872 -8.9456 -0.0137 32 1 5.3014 -7.1880 1.6388 33 1 7.2632 -5.7042 1.6362 34 1 5.6164 -3.5096 -1.6355 35 1 3.6465 -4.9827 -1.6425 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012948788.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:23 Heat of formation + Delta-G solvation = 40.694213 kcal Electronic energy + Delta-G solvation = -24222.962488 eV Core-core repulsion = 20545.852405 eV Total energy + Delta-G solvation = -3677.110082 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 346.030 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -48.81247 -40.77142 -39.10655 -36.08194 -33.47182 -33.18757 -31.27801 -30.83527 -29.32458 -28.62209 -25.07105 -24.63533 -23.08068 -22.94913 -22.85130 -20.10529 -19.04493 -17.96431 -17.49400 -16.61356 -16.39976 -15.96914 -15.86533 -15.48763 -15.14644 -15.04032 -14.52475 -14.48785 -14.24854 -13.59738 -13.28522 -13.16926 -12.97944 -12.70240 -12.52754 -12.39796 -12.22522 -11.97526 -11.21084 -11.13144 -11.06063 -10.94075 -10.86054 -10.84450 -10.57304 -9.80429 -9.53356 -9.22502 -8.98730 -8.86981 -8.69711 -8.54743 -7.90958 -7.09198 -6.24692 -4.32470 0.35340 0.91423 1.06963 1.08862 1.25694 1.70974 2.07445 2.14234 3.21051 3.27318 3.27834 3.36937 3.68846 3.79090 4.28966 4.30619 4.32906 4.38983 4.47919 4.78949 4.79891 4.91493 5.07185 5.12073 5.16093 5.26948 5.40553 5.66145 5.89727 5.94469 6.01555 6.16875 6.25836 6.30380 6.47719 6.89839 6.91865 7.06709 7.18411 7.63498 7.89934 8.15609 8.68940 9.31793 10.85643 Molecular weight = 346.03amu Principal moments of inertia in cm(-1) A = 0.009019 B = 0.004944 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3103.974425 B = 5661.898117 C = 8581.794562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.072 3.928 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.526 4.526 8 H 0.065 0.935 9 C 0.049 3.951 10 S -0.030 6.030 11 C 0.214 3.786 12 N -0.518 5.518 13 C 0.330 3.670 14 N -0.517 5.517 15 C 0.103 3.897 16 S 0.157 5.843 17 C -0.201 4.201 18 C -0.011 4.011 19 C -0.054 4.054 20 C -0.069 4.069 21 C -0.161 4.161 22 C 0.107 3.893 23 F -0.141 7.141 24 C -0.146 4.146 25 C -0.040 4.040 26 C -0.173 4.173 27 H 0.266 0.734 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.203 0.797 31 H 0.178 0.822 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.140 0.860 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.332 -16.745 -0.344 18.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.134 4.134 3 Si 0.729 3.271 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.566 4.566 8 H 0.083 0.917 9 C -0.097 4.097 10 S 0.219 5.781 11 C -0.050 4.050 12 N -0.238 5.238 13 C 0.035 3.965 14 N -0.237 5.237 15 C -0.149 4.149 16 S 0.417 5.583 17 C -0.336 4.336 18 C -0.024 4.024 19 C -0.057 4.057 20 C -0.088 4.088 21 C -0.180 4.180 22 C 0.088 3.912 23 F -0.120 7.120 24 C -0.165 4.165 25 C -0.063 4.063 26 C -0.193 4.193 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.219 0.781 31 H 0.195 0.805 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.158 0.842 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.913 -17.787 -0.312 19.470 hybrid contribution 0.219 2.418 0.096 2.429 sum 8.132 -15.369 -0.216 17.389 Atomic orbital electron populations 1.69969 1.06102 1.27391 1.48486 1.24929 0.94924 0.99150 0.94361 0.86418 0.79825 0.82401 0.78443 1.20251 1.20860 1.19502 1.20619 0.93132 0.88880 1.53924 0.91685 1.21543 0.94730 0.91117 1.02343 1.86193 1.10979 0.96743 1.84143 1.24206 0.94916 0.95870 0.90022 1.68923 1.01367 1.35615 1.17846 1.24983 1.00515 0.82234 0.88737 1.68102 1.13763 1.23050 1.18752 1.23632 0.93474 0.98022 0.99757 1.84034 0.94630 1.02373 1.77296 1.25258 1.01700 0.96697 1.09967 1.18029 0.90510 0.92233 1.01642 1.18276 0.93173 0.96320 0.97979 1.20928 0.91883 0.98713 0.97245 1.20936 1.00330 0.96438 1.00322 1.17801 0.84870 0.90835 0.97734 1.91494 1.52995 1.71564 1.95939 1.21035 0.93574 1.01581 1.00344 1.21019 0.95753 0.91442 0.98050 1.20056 0.93515 0.94314 1.11410 0.92382 0.92924 0.93048 0.78097 0.80491 0.85042 0.84771 0.84223 0.83955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.17 13.29 55.43 0.74 -24.44 16 2 C 0.07 1.95 5.46 -17.82 -0.10 1.85 16 3 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 7 C -0.53 -14.09 9.13 -34.44 -0.31 -14.41 16 8 H 0.07 1.70 7.71 -52.49 -0.40 1.30 16 9 C 0.05 1.23 4.63 36.00 0.17 1.39 16 10 S -0.03 -0.59 15.84 -107.50 -1.70 -2.30 16 11 C 0.21 4.06 7.06 -15.88 -0.11 3.95 16 12 N -0.52 -10.09 9.27 -12.98 -0.12 -10.21 16 13 C 0.33 5.44 12.27 -92.38 -1.13 4.30 16 14 N -0.52 -8.45 10.47 -13.37 -0.14 -8.59 16 15 C 0.10 1.62 7.68 -16.12 -0.12 1.49 16 16 S 0.16 1.79 23.22 -107.50 -2.50 -0.71 16 17 C -0.20 -2.14 10.63 28.97 0.31 -1.83 16 18 C -0.01 -0.15 5.50 -104.56 -0.57 -0.73 16 19 C -0.05 -0.71 4.89 -104.91 -0.51 -1.22 16 20 C -0.07 -0.78 9.59 -39.24 -0.38 -1.15 16 21 C -0.16 -1.84 10.01 -39.57 -0.40 -2.24 16 22 C 0.11 1.42 7.30 -39.35 -0.29 1.14 16 23 F -0.14 -1.97 17.26 2.25 0.04 -1.93 16 24 C -0.15 -2.00 9.98 -39.56 -0.39 -2.39 16 25 C -0.04 -0.56 6.00 -39.24 -0.24 -0.79 16 26 C -0.17 -2.85 5.97 -105.08 -0.63 -3.47 16 27 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.05 1.41 8.14 -51.92 -0.42 0.99 16 29 H 0.05 1.40 8.14 -51.91 -0.42 0.97 16 30 H 0.20 2.56 8.06 -52.49 -0.42 2.14 16 31 H 0.18 1.29 8.06 -52.48 -0.42 0.87 16 32 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 33 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 34 H 0.14 1.79 8.06 -52.48 -0.42 1.37 16 35 H 0.14 2.10 6.76 -48.54 -0.33 1.77 16 LS Contribution 335.64 15.07 5.06 5.06 Total: -1.00 -30.20 335.64 -11.18 -41.38 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -2.83 Total: 0.14 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -4.71 Total: -14.11 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.48 Total: -43.24 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -4.20 Total: -3.01 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.20 -11.18 -41.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012948788.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.077 kcal (2) G-P(sol) polarization free energy of solvation -30.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds