Wall clock time and date at job start Fri Apr 10 2020 14:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99814 * 2 1 4 4 H 1.48500 * 109.47128 * 270.00547 * 3 2 1 5 5 H 1.48509 * 109.46937 * 30.00025 * 3 2 1 6 6 H 1.48493 * 109.47415 * 150.00204 * 3 2 1 7 7 C 1.37873 * 120.00305 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99861 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99924 * 0.02562 * 7 2 1 10 10 S 1.81005 * 109.47055 * 180.02562 * 9 7 2 11 11 C 1.76199 * 99.99969 * 179.97438 * 10 9 7 12 12 N 1.32594 * 120.51737 * 359.97438 * 11 10 9 13 13 C 1.32032 * 121.12824 * 180.02562 * 12 11 10 14 14 N 1.31296 * 122.15003 * 359.97438 * 13 12 11 15 15 C 1.33998 * 121.08166 * 0.02562 * 14 13 12 16 16 S 1.75723 * 131.06218 * 179.97438 * 15 14 13 17 17 C 1.75314 * 92.36406 * 179.81449 * 16 15 14 18 18 C 1.33172 * 111.29672 * 0.34384 * 17 16 15 19 19 C 1.48235 * 122.79777 * 179.86330 * 18 17 16 20 20 C 1.39422 * 120.10067 * 309.70658 * 19 18 17 21 21 C 1.37975 * 119.89137 * 180.02562 * 20 19 18 22 22 C 1.38540 * 120.10832 * 0.02562 * 21 20 19 23 23 F 1.35102 * 119.89689 * 179.97438 * 22 21 20 24 24 C 1.38550 * 120.20639 * 0.02562 * 22 21 20 25 25 C 1.37972 * 120.10892 * 359.97438 * 24 22 21 26 26 C 1.39537 * 119.05703 * 0.02562 * 15 14 13 27 27 H 0.97001 * 119.99956 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47151 * 59.99732 * 9 7 2 29 29 H 1.09007 * 109.47171 * 299.99518 * 9 7 2 30 30 H 1.08001 * 118.92929 * 180.02562 * 13 12 11 31 31 H 1.08009 * 124.35045 * 180.22754 * 17 16 15 32 32 H 1.08003 * 120.05798 * 0.02562 * 20 19 18 33 33 H 1.08009 * 119.94626 * 179.72600 * 21 20 19 34 34 H 1.08005 * 119.94307 * 179.97438 * 24 22 21 35 35 H 1.07991 * 120.05484 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 16 2.4275 -3.8748 -0.0014 11 6 1.3074 -5.2350 -0.0021 12 7 -0.0024 -5.0287 -0.0021 13 6 -0.8524 -6.0389 -0.0021 14 7 -0.4517 -7.2893 -0.0026 15 6 0.8523 -7.5978 -0.0026 16 16 1.6705 -9.1529 -0.0026 17 6 3.2543 -8.4013 -0.0083 18 6 3.1594 -7.0730 -0.0026 19 6 4.3450 -6.1832 -0.0026 20 6 5.3696 -6.3836 0.9214 21 6 6.4709 -5.5525 0.9179 22 6 6.5594 -4.5199 -0.0014 23 9 7.6395 -3.7083 -0.0007 24 6 5.5432 -4.3162 -0.9209 25 6 4.4379 -5.1420 -0.9252 26 6 1.7926 -6.5668 -0.0016 27 1 -0.4850 0.8401 0.0004 28 1 0.6248 -2.5562 -0.8919 29 1 0.6242 -2.5575 0.8881 30 1 -1.9121 -5.8301 -0.0026 31 1 4.1872 -8.9456 -0.0137 32 1 5.3014 -7.1880 1.6388 33 1 7.2632 -5.7042 1.6362 34 1 5.6164 -3.5096 -1.6355 35 1 3.6465 -4.9827 -1.6425 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012948788.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:22 Heat of formation + Delta-G solvation = 25.619777 kcal Electronic energy + Delta-G solvation = -24223.616164 eV Core-core repulsion = 20545.852405 eV Total energy + Delta-G solvation = -3677.763759 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 346.030 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.84857 -42.01040 -40.11825 -37.17205 -35.31913 -34.72439 -32.28220 -31.92635 -30.71477 -30.33343 -26.29307 -26.02721 -24.87214 -24.07822 -23.84549 -21.13505 -20.31628 -19.17592 -18.63265 -18.47401 -17.55989 -17.22023 -16.95669 -16.66878 -16.52278 -16.34760 -16.06515 -15.66373 -15.23464 -14.75505 -14.64407 -14.42129 -14.35703 -14.22861 -14.11965 -13.63255 -13.36429 -13.17645 -12.79720 -12.72481 -12.44323 -12.36704 -12.27960 -12.06104 -11.94284 -11.61163 -11.23955 -10.76454 -10.38710 -10.33038 -9.89281 -9.71213 -8.96245 -8.58006 -8.32717 -6.48722 -0.79836 -0.35304 -0.04847 0.02960 0.22329 0.59077 0.80301 1.08978 1.38560 1.39601 1.50017 1.63549 2.34707 2.47535 2.66207 3.01600 3.12837 3.20536 3.33827 3.39978 3.61048 3.84763 3.97921 4.00035 4.06925 4.33114 4.45589 4.74056 4.88640 4.96479 5.00183 5.01552 5.06261 5.08293 5.20851 5.31091 5.48814 5.53578 5.63872 5.84160 5.93367 6.60441 6.85853 7.20319 8.79012 Molecular weight = 346.03amu Principal moments of inertia in cm(-1) A = 0.009019 B = 0.004944 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3103.974425 B = 5661.898117 C = 8581.794562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.018 3.982 3 Si 0.971 3.029 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.049 3.951 10 S 0.001 5.999 11 C 0.187 3.813 12 N -0.553 5.553 13 C 0.317 3.683 14 N -0.514 5.514 15 C 0.069 3.931 16 S 0.230 5.770 17 C -0.164 4.164 18 C -0.043 4.043 19 C -0.055 4.055 20 C -0.062 4.062 21 C -0.149 4.149 22 C 0.089 3.911 23 F -0.148 7.148 24 C -0.156 4.156 25 C -0.060 4.060 26 C -0.174 4.174 27 H 0.269 0.731 28 H 0.019 0.981 29 H 0.015 0.985 30 H 0.228 0.772 31 H 0.224 0.776 32 H 0.168 0.832 33 H 0.164 0.836 34 H 0.136 0.864 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.724 -19.714 0.520 22.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.580 4.580 8 H 0.086 0.914 9 C -0.098 4.098 10 S 0.250 5.750 11 C -0.077 4.077 12 N -0.274 5.274 13 C 0.022 3.978 14 N -0.233 5.233 15 C -0.183 4.183 16 S 0.490 5.510 17 C -0.299 4.299 18 C -0.056 4.056 19 C -0.059 4.059 20 C -0.080 4.080 21 C -0.168 4.168 22 C 0.070 3.930 23 F -0.127 7.127 24 C -0.175 4.175 25 C -0.084 4.084 26 C -0.194 4.194 27 H 0.078 0.922 28 H 0.038 0.962 29 H 0.033 0.967 30 H 0.244 0.756 31 H 0.240 0.760 32 H 0.185 0.815 33 H 0.181 0.819 34 H 0.154 0.846 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 10.299 -20.779 0.549 23.198 hybrid contribution -0.491 2.981 -0.182 3.027 sum 9.807 -17.798 0.367 20.325 Atomic orbital electron populations 1.70103 1.07838 1.28418 1.49515 1.25899 0.95747 1.03008 0.93689 0.85354 0.78622 0.77721 0.78867 1.19293 1.20286 1.18629 1.20976 0.93372 0.90070 1.53607 0.91429 1.21102 0.95609 0.94128 0.98944 1.85904 1.08767 0.94604 1.85760 1.24193 0.94916 0.96608 0.91947 1.68851 1.02250 1.37472 1.18813 1.25459 1.01282 0.82046 0.89003 1.68193 1.14431 1.22653 1.18005 1.24385 0.93205 1.00621 1.00121 1.83923 0.93354 0.98541 1.75138 1.25872 1.03409 0.95681 1.04932 1.18003 0.89100 0.93436 1.05028 1.18387 0.93648 0.95862 0.97992 1.21290 0.90707 0.99240 0.96728 1.21291 1.00956 0.94986 0.99583 1.18016 0.84700 0.91733 0.98539 1.91474 1.53217 1.71958 1.96043 1.21084 0.93984 1.01643 1.00827 1.20929 0.95723 0.92818 0.98881 1.20313 0.95535 0.93181 1.10397 0.92185 0.96248 0.96662 0.75573 0.75955 0.81495 0.81878 0.84610 0.85593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.01 13.29 21.45 0.28 -54.72 16 2 C 0.02 1.02 5.46 84.65 0.46 1.48 16 3 Si 0.97 43.41 29.54 68.60 2.03 45.43 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 7 C -0.54 -30.45 9.13 25.60 0.23 -30.21 16 8 H 0.07 3.67 7.71 -2.91 -0.02 3.64 16 9 C 0.05 2.66 4.63 71.23 0.33 2.99 16 10 S 0.00 0.04 15.84 -56.49 -0.89 -0.85 16 11 C 0.19 7.40 7.06 85.44 0.60 8.01 16 12 N -0.55 -22.92 9.27 -194.98 -1.81 -24.72 16 13 C 0.32 10.76 12.27 180.96 2.22 12.98 16 14 N -0.51 -16.55 10.47 -196.20 -2.05 -18.61 16 15 C 0.07 2.04 7.68 84.68 0.65 2.69 16 16 S 0.23 4.27 23.22 -56.49 -1.31 2.96 16 17 C -0.16 -2.66 10.63 66.68 0.71 -1.95 16 18 C -0.04 -1.05 5.50 -19.82 -0.11 -1.16 16 19 C -0.06 -1.34 4.89 -20.05 -0.10 -1.44 16 20 C -0.06 -1.15 9.59 22.49 0.22 -0.93 16 21 C -0.15 -2.93 10.01 22.28 0.22 -2.71 16 22 C 0.09 2.27 7.30 22.42 0.16 2.43 16 23 F -0.15 -4.00 17.26 44.97 0.78 -3.22 16 24 C -0.16 -4.30 9.98 22.28 0.22 -4.08 16 25 C -0.06 -1.69 6.00 22.49 0.13 -1.56 16 26 C -0.17 -5.61 5.97 -20.16 -0.12 -5.73 16 27 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 28 H 0.02 1.13 8.14 -2.40 -0.02 1.11 16 29 H 0.02 0.89 8.14 -2.39 -0.02 0.88 16 30 H 0.23 6.00 8.06 -2.91 -0.02 5.98 16 31 H 0.22 1.59 8.06 -2.91 -0.02 1.57 16 32 H 0.17 1.92 8.06 -2.91 -0.02 1.89 16 33 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 34 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 35 H 0.13 3.92 6.76 -5.43 -0.04 3.89 16 Total: -1.00 -70.58 335.64 4.00 -66.58 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: 1.14 Total: 6.34 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: 5.84 Total: -19.19 kcal Atomic # 7 Polarization: -94.48 SS G_CDS: -3.58 Total: -98.05 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.78 Total: -3.22 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: 4.32 SS G_CDS: -2.21 Total: 2.11 kcal Total: -70.58 4.00 -66.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012948788.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.200 kcal (2) G-P(sol) polarization free energy of solvation -70.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds