Wall clock time and date at job start Fri Apr 10 2020 14:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30950 * 1 3 3 Si 1.86792 * 119.99976 * 2 1 4 4 H 1.48503 * 109.47565 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47291 * 120.00185 * 3 2 1 6 6 H 1.48500 * 109.47238 * 239.99972 * 3 2 1 7 7 C 1.39846 * 119.99674 * 180.27496 * 2 1 3 8 8 H 1.08000 * 120.00117 * 355.22053 * 7 2 1 9 9 C 1.39627 * 119.99966 * 175.21955 * 7 2 1 10 10 N 1.31426 * 125.04965 * 190.30181 * 9 7 2 11 11 C 1.31260 * 117.21682 * 180.02562 * 10 9 7 12 12 C 1.47150 * 122.68089 * 180.02562 * 11 10 9 13 13 C 1.36400 * 125.33683 * 324.97405 * 12 11 10 14 14 C 1.37690 * 114.40133 * 179.97438 * 13 12 11 15 15 C 1.33798 * 115.20293 * 359.97438 * 14 13 12 16 16 S 1.75817 * 109.98492 * 359.75768 * 15 14 13 17 17 C 1.39176 * 114.63820 * 359.97438 * 11 10 9 18 18 N 1.37783 * 125.99668 * 180.02562 * 17 11 10 19 19 C 1.34777 * 120.00147 * 179.97438 * 18 17 11 20 20 O 1.21720 * 119.99709 * 359.97438 * 19 18 17 21 21 C 1.46548 * 120.00686 * 179.97438 * 19 18 17 22 22 C 1.36624 * 125.99959 * 179.97438 * 21 19 18 23 23 C 1.40332 * 106.70694 * 180.02562 * 22 21 19 24 24 C 1.35152 * 107.12716 * 0.02562 * 23 22 21 25 25 O 1.33954 * 108.76925 * 359.73206 * 24 23 22 26 26 S 1.76023 * 125.04503 * 9.99695 * 9 7 2 27 27 H 0.96996 * 119.99652 * 179.18225 * 1 2 3 28 28 H 1.07991 * 122.79708 * 359.97438 * 13 12 11 29 29 H 1.08004 * 122.39250 * 180.02562 * 14 13 12 30 30 H 1.08004 * 125.00415 * 179.97438 * 15 14 13 31 31 H 0.96995 * 120.00340 * 0.02562 * 18 17 11 32 32 H 1.08002 * 126.64072 * 0.02813 * 22 21 19 33 33 H 1.08006 * 126.43583 * 179.97438 * 23 22 21 34 34 H 1.07997 * 125.61330 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3095 0.0000 0.0000 3 14 2.2434 1.6177 0.0000 4 1 1.2785 2.7465 -0.0006 5 1 3.0972 1.6964 1.2125 6 1 3.0972 1.6964 -1.2125 7 6 2.0087 -1.2111 -0.0058 8 1 1.4714 -2.1452 0.0676 9 6 3.4013 -1.2128 -0.1066 10 7 4.1417 -2.2787 -0.3138 11 6 5.4408 -2.1033 -0.3818 12 6 6.3813 -3.2117 -0.6101 13 6 6.2332 -4.4823 -0.1367 14 6 7.2502 -5.3419 -0.4868 15 6 8.2208 -4.8023 -1.2330 16 16 7.8685 -3.1080 -1.5435 17 6 5.8574 -0.7850 -0.2217 18 7 7.1605 -0.3383 -0.2514 19 6 7.4277 0.9719 -0.0823 20 8 6.5179 1.7605 0.0962 21 6 8.8137 1.4471 -0.1132 22 6 9.2225 2.7413 0.0429 23 6 10.6222 2.7372 -0.0583 24 6 11.0022 1.4576 -0.2696 25 8 9.9101 0.6825 -0.2966 26 16 4.4254 0.2134 0.0175 27 1 -0.4849 -0.8400 -0.0120 28 1 5.3886 -4.7884 0.4627 29 1 7.2629 -6.3778 -0.1815 30 1 9.0905 -5.3308 -1.5946 31 1 7.8854 -0.9665 -0.3947 32 1 8.5908 3.6009 0.2116 33 1 11.2733 3.5956 0.0176 34 1 12.0193 1.1156 -0.3916 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027793442.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:54:08 Heat of formation + Delta-G solvation = 41.976880 kcal Electronic energy + Delta-G solvation = -24301.475952 eV Core-core repulsion = 20612.048701 eV Total energy + Delta-G solvation = -3689.427251 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 346.023 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.74260 -39.41704 -38.09571 -36.77800 -34.78339 -33.90559 -33.10361 -30.65875 -29.91932 -28.14890 -26.18193 -24.32481 -22.96863 -21.95730 -21.76510 -20.57477 -19.82998 -19.07765 -18.51995 -18.19974 -17.17387 -16.55220 -16.39668 -15.76451 -15.56441 -14.92122 -14.61030 -14.53241 -13.97541 -13.53689 -13.30989 -13.23197 -13.08127 -12.78042 -12.77306 -12.52584 -12.41545 -12.16356 -11.88877 -11.44021 -11.28011 -10.67260 -10.48151 -10.18082 -10.17081 -9.91756 -9.64343 -9.17765 -8.82347 -8.71038 -8.29643 -7.97572 -7.74136 -7.46417 -7.15563 -4.76639 0.86120 1.14527 1.73185 2.05427 2.22760 2.32871 2.35419 2.59015 2.95316 3.08939 3.16350 3.18975 3.37543 3.49399 3.61268 3.82999 4.10985 4.65858 4.78839 4.93138 4.99783 5.20162 5.28222 5.54279 5.64471 5.65221 5.79031 5.87973 6.09873 6.21217 6.39109 6.56512 6.64402 6.77346 6.79543 7.09705 7.13927 7.59347 7.73471 7.92343 8.15102 8.35134 9.39771 9.63947 Molecular weight = 346.02amu Principal moments of inertia in cm(-1) A = 0.008810 B = 0.005499 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3177.326112 B = 5090.837490 C = 8138.703490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.056 3.944 3 Si 0.910 3.090 4 H -0.220 1.220 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.411 4.411 8 H 0.104 0.896 9 C 0.192 3.808 10 N -0.570 5.570 11 C 0.158 3.842 12 C -0.080 4.080 13 C -0.129 4.129 14 C -0.121 4.121 15 C -0.235 4.235 16 S 0.086 5.914 17 C -0.152 4.152 18 N -0.589 5.589 19 C 0.570 3.430 20 O -0.498 6.498 21 C -0.062 4.062 22 C -0.125 4.125 23 C -0.224 4.224 24 C -0.014 4.014 25 O -0.165 6.165 26 S 0.031 5.969 27 H 0.294 0.706 28 H 0.145 0.855 29 H 0.138 0.862 30 H 0.161 0.839 31 H 0.403 0.597 32 H 0.161 0.839 33 H 0.156 0.844 34 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.703 0.265 -0.871 17.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.170 4.170 3 Si 0.733 3.267 4 H -0.143 1.143 5 H -0.123 1.123 6 H -0.123 1.123 7 C -0.455 4.455 8 H 0.122 0.878 9 C -0.059 4.059 10 N -0.292 5.292 11 C 0.015 3.985 12 C -0.200 4.200 13 C -0.160 4.160 14 C -0.152 4.152 15 C -0.370 4.370 16 S 0.349 5.651 17 C -0.370 4.370 18 N -0.233 5.233 19 C 0.356 3.644 20 O -0.376 6.376 21 C -0.114 4.114 22 C -0.146 4.146 23 C -0.243 4.243 24 C -0.084 4.084 25 O -0.060 6.060 26 S 0.284 5.716 27 H 0.106 0.894 28 H 0.162 0.838 29 H 0.156 0.844 30 H 0.178 0.822 31 H 0.241 0.759 32 H 0.179 0.821 33 H 0.173 0.827 34 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 17.047 3.853 -1.474 17.539 hybrid contribution 0.668 -3.735 0.541 3.832 sum 17.716 0.118 -0.933 17.741 Atomic orbital electron populations 1.70607 1.07409 1.33319 1.29320 1.27154 0.95867 1.03489 0.90476 0.84631 0.79682 0.76919 0.85494 1.14298 1.12326 1.12322 1.20043 0.89013 0.97282 1.39144 0.87795 1.23907 0.97262 0.88602 0.96168 1.66868 1.01365 1.29301 1.31634 1.17758 0.89888 0.86764 1.04049 1.22637 0.97683 0.96643 1.03032 1.20659 1.00490 0.91439 1.03426 1.20046 0.94285 1.00891 0.99958 1.25560 1.05290 0.97349 1.08847 1.83946 1.18806 1.09858 1.52458 1.23516 0.88687 0.96028 1.28775 1.41919 1.06280 1.07788 1.67301 1.16521 0.85171 0.82621 0.80069 1.90841 1.42822 1.53864 1.50092 1.22054 0.86215 0.90885 1.12287 1.21956 0.95147 0.96406 1.01117 1.21832 0.95262 0.98110 1.09059 1.24383 0.90801 0.89961 1.03285 1.84093 1.14330 1.38033 1.69562 1.85953 0.96918 1.12074 1.76660 0.89397 0.83764 0.84436 0.82182 0.75851 0.82131 0.82651 0.77451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.46 13.67 55.54 0.76 -18.70 16 2 C 0.06 1.40 5.52 -17.33 -0.10 1.31 16 3 Si 0.91 19.96 24.48 -169.99 -4.16 15.80 16 4 H -0.22 -4.49 7.11 56.52 0.40 -4.08 16 5 H -0.20 -4.28 6.29 60.78 0.38 -3.89 16 6 H -0.20 -4.36 6.35 59.20 0.38 -3.98 16 7 C -0.41 -10.71 9.85 -38.46 -0.38 -11.09 16 8 H 0.10 2.77 8.05 -52.49 -0.42 2.35 16 9 C 0.19 5.02 6.92 -17.21 -0.12 4.90 16 10 N -0.57 -14.81 10.54 -9.42 -0.10 -14.91 16 11 C 0.16 3.73 6.64 -84.15 -0.56 3.17 16 12 C -0.08 -1.59 6.16 -36.63 -0.23 -1.82 16 13 C -0.13 -2.29 10.15 -40.44 -0.41 -2.70 16 14 C -0.12 -1.71 10.15 -41.34 -0.42 -2.13 16 15 C -0.23 -3.10 11.21 29.17 0.33 -2.77 16 16 S 0.09 1.35 20.93 -107.50 -2.25 -0.90 16 17 C -0.15 -3.55 7.23 -14.53 -0.11 -3.65 16 18 N -0.59 -11.85 5.27 -11.18 -0.06 -11.90 16 19 C 0.57 11.16 7.74 -12.91 -0.10 11.06 16 20 O -0.50 -11.08 14.42 5.17 0.07 -11.01 16 21 C -0.06 -0.97 7.13 -36.82 -0.26 -1.23 16 22 C -0.13 -1.66 10.62 -39.38 -0.42 -2.08 16 23 C -0.22 -2.22 10.87 -39.89 -0.43 -2.66 16 24 C -0.01 -0.14 12.08 29.63 0.36 0.22 16 25 O -0.16 -2.18 10.40 4.92 0.05 -2.13 16 26 S 0.03 0.78 12.60 -107.50 -1.35 -0.58 16 27 H 0.29 7.01 8.72 -40.82 -0.36 6.65 16 28 H 0.14 2.60 8.06 -52.49 -0.42 2.18 16 29 H 0.14 1.53 8.06 -52.48 -0.42 1.10 16 30 H 0.16 1.59 8.06 -52.48 -0.42 1.16 16 31 H 0.40 7.15 5.89 -40.82 -0.24 6.91 16 32 H 0.16 2.01 8.06 -52.49 -0.42 1.59 16 33 H 0.16 1.07 8.06 -52.48 -0.42 0.65 16 34 H 0.21 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 325.34 15.07 4.90 4.90 Total: -1.00 -30.34 325.34 -7.38 -37.72 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -2.40 Total: 11.18 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -2.84 Total: -9.47 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.60 Total: -45.52 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.13 Total: -13.14 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.16 Total: 15.80 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -3.60 Total: -1.47 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.34 -7.38 -37.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027793442.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.695 kcal (2) G-P(sol) polarization free energy of solvation -30.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds