Wall clock time and date at job start Fri Apr 10 2020 14:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30950 * 1 3 3 Si 1.86792 * 119.99976 * 2 1 4 4 H 1.48503 * 109.47565 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47291 * 120.00185 * 3 2 1 6 6 H 1.48500 * 109.47238 * 239.99972 * 3 2 1 7 7 C 1.39846 * 119.99674 * 180.27496 * 2 1 3 8 8 H 1.08000 * 120.00117 * 355.22053 * 7 2 1 9 9 C 1.39627 * 119.99966 * 175.21955 * 7 2 1 10 10 N 1.31426 * 125.04965 * 190.30181 * 9 7 2 11 11 C 1.31260 * 117.21682 * 180.02562 * 10 9 7 12 12 C 1.47150 * 122.68089 * 180.02562 * 11 10 9 13 13 C 1.36400 * 125.33683 * 324.97405 * 12 11 10 14 14 C 1.37690 * 114.40133 * 179.97438 * 13 12 11 15 15 C 1.33798 * 115.20293 * 359.97438 * 14 13 12 16 16 S 1.75817 * 109.98492 * 359.75768 * 15 14 13 17 17 C 1.39176 * 114.63820 * 359.97438 * 11 10 9 18 18 N 1.37783 * 125.99668 * 180.02562 * 17 11 10 19 19 C 1.34777 * 120.00147 * 179.97438 * 18 17 11 20 20 O 1.21720 * 119.99709 * 359.97438 * 19 18 17 21 21 C 1.46548 * 120.00686 * 179.97438 * 19 18 17 22 22 C 1.36624 * 125.99959 * 179.97438 * 21 19 18 23 23 C 1.40332 * 106.70694 * 180.02562 * 22 21 19 24 24 C 1.35152 * 107.12716 * 0.02562 * 23 22 21 25 25 O 1.33954 * 108.76925 * 359.73206 * 24 23 22 26 26 S 1.76023 * 125.04503 * 9.99695 * 9 7 2 27 27 H 0.96996 * 119.99652 * 179.18225 * 1 2 3 28 28 H 1.07991 * 122.79708 * 359.97438 * 13 12 11 29 29 H 1.08004 * 122.39250 * 180.02562 * 14 13 12 30 30 H 1.08004 * 125.00415 * 179.97438 * 15 14 13 31 31 H 0.96995 * 120.00340 * 0.02562 * 18 17 11 32 32 H 1.08002 * 126.64072 * 0.02813 * 22 21 19 33 33 H 1.08006 * 126.43583 * 179.97438 * 23 22 21 34 34 H 1.07997 * 125.61330 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3095 0.0000 0.0000 3 14 2.2434 1.6177 0.0000 4 1 1.2785 2.7465 -0.0006 5 1 3.0972 1.6964 1.2125 6 1 3.0972 1.6964 -1.2125 7 6 2.0087 -1.2111 -0.0058 8 1 1.4714 -2.1452 0.0676 9 6 3.4013 -1.2128 -0.1066 10 7 4.1417 -2.2787 -0.3138 11 6 5.4408 -2.1033 -0.3818 12 6 6.3813 -3.2117 -0.6101 13 6 6.2332 -4.4823 -0.1367 14 6 7.2502 -5.3419 -0.4868 15 6 8.2208 -4.8023 -1.2330 16 16 7.8685 -3.1080 -1.5435 17 6 5.8574 -0.7850 -0.2217 18 7 7.1605 -0.3383 -0.2514 19 6 7.4277 0.9719 -0.0823 20 8 6.5179 1.7605 0.0962 21 6 8.8137 1.4471 -0.1132 22 6 9.2225 2.7413 0.0429 23 6 10.6222 2.7372 -0.0583 24 6 11.0022 1.4576 -0.2696 25 8 9.9101 0.6825 -0.2966 26 16 4.4254 0.2134 0.0175 27 1 -0.4849 -0.8400 -0.0120 28 1 5.3886 -4.7884 0.4627 29 1 7.2629 -6.3778 -0.1815 30 1 9.0905 -5.3308 -1.5946 31 1 7.8854 -0.9665 -0.3947 32 1 8.5908 3.6009 0.2116 33 1 11.2733 3.5956 0.0176 34 1 12.0193 1.1156 -0.3916 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000027793442.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:54:07 Heat of formation + Delta-G solvation = 20.909482 kcal Electronic energy + Delta-G solvation = -24302.389503 eV Core-core repulsion = 20612.048701 eV Total energy + Delta-G solvation = -3690.340802 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 346.023 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.70177 -40.97723 -39.77832 -38.17667 -36.49768 -35.69769 -34.07769 -32.21923 -31.04548 -29.73865 -27.82059 -25.67847 -24.29698 -23.58292 -22.72844 -22.00214 -21.19062 -20.94935 -19.85077 -19.62665 -18.71557 -17.73154 -17.48578 -17.44958 -16.95817 -16.29393 -16.11287 -16.02146 -15.64303 -15.36969 -15.00566 -14.45366 -14.22996 -14.12677 -13.97685 -13.82474 -13.62220 -13.58556 -13.27040 -13.10612 -12.92028 -12.26654 -12.03692 -11.86123 -11.57880 -11.51262 -11.08502 -10.95241 -10.18580 -9.92406 -9.81231 -9.69661 -9.52294 -9.30103 -8.86532 -6.71628 -0.49046 -0.02903 0.34827 0.45998 0.61470 0.97827 1.05551 1.31108 1.38045 1.42806 1.66668 1.72123 1.75224 1.96031 2.03600 2.21270 2.33492 2.98489 3.63483 3.73608 3.92530 4.08342 4.21386 4.23287 4.56342 4.60834 4.69934 4.85642 4.89735 4.91139 5.14661 5.16622 5.26623 5.38545 5.46332 5.52327 5.66977 5.77977 6.00450 6.18672 6.22550 6.83044 7.50469 7.69840 Molecular weight = 346.02amu Principal moments of inertia in cm(-1) A = 0.008810 B = 0.005499 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3177.326112 B = 5090.837490 C = 8138.703490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.039 3.961 3 Si 0.934 3.066 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.205 1.205 7 C -0.439 4.439 8 H 0.083 0.917 9 C 0.175 3.825 10 N -0.595 5.595 11 C 0.144 3.856 12 C -0.143 4.143 13 C -0.120 4.120 14 C -0.133 4.133 15 C -0.196 4.196 16 S 0.104 5.896 17 C -0.154 4.154 18 N -0.590 5.590 19 C 0.569 3.431 20 O -0.536 6.536 21 C -0.109 4.109 22 C -0.114 4.114 23 C -0.229 4.229 24 C 0.017 3.983 25 O -0.175 6.175 26 S 0.024 5.976 27 H 0.292 0.708 28 H 0.129 0.871 29 H 0.175 0.825 30 H 0.208 0.792 31 H 0.414 0.586 32 H 0.160 0.840 33 H 0.192 0.808 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.760 0.110 -1.491 22.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.184 4.184 3 Si 0.754 3.246 4 H -0.110 1.110 5 H -0.126 1.126 6 H -0.131 1.131 7 C -0.483 4.483 8 H 0.101 0.899 9 C -0.077 4.077 10 N -0.318 5.318 11 C 0.003 3.997 12 C -0.262 4.262 13 C -0.152 4.152 14 C -0.162 4.162 15 C -0.332 4.332 16 S 0.367 5.633 17 C -0.372 4.372 18 N -0.236 5.236 19 C 0.358 3.642 20 O -0.416 6.416 21 C -0.161 4.161 22 C -0.135 4.135 23 C -0.247 4.247 24 C -0.053 4.053 25 O -0.071 6.071 26 S 0.276 5.724 27 H 0.104 0.896 28 H 0.147 0.853 29 H 0.192 0.808 30 H 0.225 0.775 31 H 0.254 0.746 32 H 0.178 0.822 33 H 0.209 0.791 34 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 22.128 3.675 -2.098 22.530 hybrid contribution -0.499 -3.788 0.702 3.885 sum 21.629 -0.113 -1.396 21.675 Atomic orbital electron populations 1.70632 1.07471 1.33244 1.30441 1.27869 0.96006 1.04870 0.89694 0.84350 0.79410 0.75911 0.84979 1.10985 1.12607 1.13077 1.20001 0.89346 0.97166 1.41809 0.89913 1.24068 0.97577 0.89593 0.96506 1.66875 1.02941 1.29794 1.32141 1.18202 0.89655 0.88273 1.03558 1.22647 0.99873 0.96507 1.07134 1.20880 1.00850 0.91453 1.02054 1.20268 0.93324 1.02111 1.00512 1.26169 1.05567 0.95598 1.05875 1.83797 1.15981 1.12090 1.51401 1.23624 0.89867 0.95817 1.27856 1.41957 1.05165 1.08521 1.67912 1.17111 0.86890 0.81827 0.78351 1.90791 1.44682 1.54514 1.51636 1.21317 0.85248 0.91793 1.17709 1.22280 0.97205 0.95378 0.98590 1.22240 0.93690 0.99802 1.08993 1.25553 0.91450 0.89531 0.98724 1.84078 1.14568 1.38539 1.69904 1.85856 0.97857 1.11815 1.76903 0.89594 0.85348 0.80801 0.77537 0.74570 0.82219 0.79121 0.72207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.96 13.67 21.82 0.30 -40.67 16 2 C 0.04 2.02 5.52 85.21 0.47 2.49 16 3 Si 0.93 41.83 24.48 68.60 1.68 43.51 16 4 H -0.19 -7.42 7.11 99.48 0.71 -6.72 16 5 H -0.20 -8.94 6.29 96.77 0.61 -8.33 16 6 H -0.21 -9.33 6.35 97.77 0.62 -8.71 16 7 C -0.44 -24.51 9.85 22.99 0.23 -24.29 16 8 H 0.08 4.80 8.05 -2.91 -0.02 4.78 16 9 C 0.18 9.76 6.92 85.09 0.59 10.35 16 10 N -0.60 -32.79 10.54 -183.73 -1.94 -34.73 16 11 C 0.14 7.09 6.64 41.80 0.28 7.36 16 12 C -0.14 -5.70 6.16 24.18 0.15 -5.55 16 13 C -0.12 -4.21 10.15 21.71 0.22 -3.99 16 14 C -0.13 -3.32 10.15 21.13 0.21 -3.10 16 15 C -0.20 -4.30 11.21 66.81 0.75 -3.55 16 16 S 0.10 3.06 20.93 -56.49 -1.18 1.88 16 17 C -0.15 -7.48 7.23 83.98 0.61 -6.87 16 18 N -0.59 -24.23 5.27 -307.50 -1.62 -25.85 16 19 C 0.57 22.72 7.74 86.41 0.67 23.39 16 20 O -0.54 -24.65 14.42 -4.41 -0.06 -24.71 16 21 C -0.11 -3.31 7.13 24.06 0.17 -3.14 16 22 C -0.11 -2.80 10.62 22.40 0.24 -2.56 16 23 C -0.23 -3.54 10.87 22.07 0.24 -3.30 16 24 C 0.02 0.23 12.08 67.11 0.81 1.04 16 25 O -0.18 -4.15 10.40 -5.31 -0.06 -4.20 16 26 S 0.02 1.25 12.60 -56.49 -0.71 0.54 16 27 H 0.29 14.67 8.72 -92.71 -0.81 13.86 16 28 H 0.13 4.79 8.06 -2.92 -0.02 4.77 16 29 H 0.17 3.07 8.06 -2.91 -0.02 3.05 16 30 H 0.21 2.66 8.06 -2.91 -0.02 2.63 16 31 H 0.41 14.69 5.89 -92.71 -0.55 14.14 16 32 H 0.16 3.85 8.06 -2.91 -0.02 3.83 16 33 H 0.19 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.26 0.57 8.06 -2.91 -0.02 0.54 16 Total: -1.00 -73.01 325.34 2.46 -70.56 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: 0.42 Total: 25.38 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: 5.63 Total: -11.71 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -3.26 Total: -101.24 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -0.12 Total: -28.91 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.68 Total: 43.51 kcal Atomic # 16 Polarization: 4.31 SS G_CDS: -1.89 Total: 2.42 kcal Total: -73.01 2.46 -70.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027793442.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.465 kcal (2) G-P(sol) polarization free energy of solvation -73.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds