Wall clock time and date at job start Fri Apr 10 2020 14:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47513 * 2 1 4 4 C 1.36885 * 126.39572 * 260.58880 * 3 2 1 5 5 C 1.34667 * 106.81703 * 180.11859 * 4 3 2 6 6 N 1.34124 * 108.01882 * 359.57896 * 5 4 3 7 7 C 1.30498 * 109.25960 * 0.26510 * 6 5 4 8 8 C 1.50698 * 125.65101 * 179.97438 * 7 6 5 9 9 N 1.46894 * 109.47401 * 264.39854 * 8 7 6 10 10 C 1.46959 * 111.00008 * 52.16832 * 9 8 7 11 11 C 1.53054 * 109.36437 * 183.18872 * 10 9 8 12 12 N 1.46960 * 109.36285 * 301.59506 * 11 10 9 13 13 C 1.46903 * 110.99684 * 183.18883 * 12 11 10 14 14 C 1.53004 * 109.46767 * 160.28509 * 13 12 11 15 15 H 1.09000 * 109.47170 * 56.06721 * 14 13 12 16 16 C 1.47201 * 109.47063 * 296.07050 * 14 13 12 17 17 N 9.54862 * 119.16849 * 70.09093 * 2 1 3 18 18 C 1.52997 * 109.46846 * 176.06864 * 14 13 12 19 19 C 1.50701 * 109.47105 * 184.99692 * 18 14 13 20 20 H 1.08003 * 119.99692 * 0.02562 * 19 18 14 21 21 C 1.37872 * 120.00186 * 180.02562 * 19 18 14 22 22 N 1.31519 * 119.99938 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00218 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46934 * 60.00097 * 23 21 19 25 25 H 1.48505 * 109.47467 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47512 * 300.00423 * 23 21 19 27 27 C 1.46959 * 110.87827 * 59.32311 * 12 11 10 28 28 C 1.46960 * 110.99873 * 175.96425 * 9 8 7 29 29 H 1.08998 * 109.49187 * 296.77559 * 28 9 8 30 30 C 1.52995 * 109.48801 * 56.82701 * 28 9 8 31 31 H 1.09001 * 109.47341 * 64.96089 * 1 2 3 32 32 H 1.09004 * 109.47152 * 184.96595 * 1 2 3 33 33 H 1.09004 * 109.47141 * 304.96326 * 1 2 3 34 34 H 1.09002 * 109.47030 * 239.99240 * 2 1 3 35 35 H 1.09003 * 109.47362 * 119.99813 * 2 1 3 36 36 H 1.08000 * 126.59217 * 0.02562 * 4 3 2 37 37 H 1.08001 * 125.98845 * 179.84679 * 5 4 3 38 38 H 1.09006 * 109.46926 * 24.40195 * 8 7 6 39 39 H 1.09001 * 109.47134 * 144.39615 * 8 7 6 40 40 H 1.09004 * 109.48389 * 303.15528 * 10 9 8 41 41 H 1.08997 * 109.48723 * 63.22001 * 10 9 8 42 42 H 1.09002 * 109.48759 * 181.62740 * 11 10 9 43 43 H 1.08995 * 109.50778 * 61.57328 * 11 10 9 44 44 H 1.08997 * 109.46962 * 280.28589 * 13 12 11 45 45 H 1.08999 * 109.47134 * 40.28231 * 13 12 11 46 46 H 1.08997 * 109.47154 * 305.00106 * 18 14 13 47 47 H 1.09006 * 109.46969 * 65.00074 * 18 14 13 48 48 H 0.97000 * 119.99981 * 180.02562 * 22 21 19 49 49 H 1.08996 * 109.48645 * 180.70815 * 27 12 11 50 50 H 1.08997 * 109.48723 * 60.64469 * 27 12 11 51 51 H 1.08996 * 109.47304 * 59.99760 * 30 28 9 52 52 H 1.09003 * 109.47314 * 179.97438 * 30 28 9 53 53 H 1.09006 * 109.47132 * 299.99426 * 30 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4590 2.0869 -1.0870 5 6 2.8150 3.3068 -0.6414 6 7 2.5889 3.3481 0.6800 7 6 2.1117 2.1982 1.0712 8 6 1.7288 1.8409 2.4843 9 7 2.8491 1.1488 3.1351 10 6 4.0916 1.9234 3.0087 11 6 5.2471 1.1337 3.6281 12 7 4.9453 0.8542 5.0389 13 6 6.0658 0.1620 5.6898 14 6 5.9503 0.3199 7.2073 15 1 4.9796 -0.0494 7.5382 16 6 6.0820 1.7419 7.5641 17 7 6.1838 2.8392 7.8394 18 6 7.0606 -0.4820 7.8893 19 6 6.8745 -0.4271 9.3837 20 1 6.0468 0.1243 9.8049 21 6 7.7607 -1.0807 10.2133 22 7 8.7689 -1.7517 9.7004 23 14 7.5297 -1.0132 12.0657 24 1 6.2101 -1.5943 12.4214 25 1 8.6081 -1.7905 12.7278 26 1 7.5873 0.3992 12.5207 27 6 3.7029 0.0796 5.1653 28 6 2.5473 0.8694 4.5460 29 1 2.4197 1.8089 5.0836 30 6 1.2596 0.0486 4.6396 31 1 -0.3634 0.4349 -0.9311 32 1 -0.3634 -1.0238 0.0890 33 1 -0.3633 0.5889 0.8422 34 1 1.8933 -0.5140 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 2.5126 1.7328 -2.1059 37 1 3.2090 4.1123 -1.2433 38 1 1.4925 2.7500 3.0375 39 1 0.8567 1.1872 2.4702 40 1 4.3001 2.1067 1.9547 41 1 3.9814 2.8749 3.5289 42 1 6.1644 1.7187 3.5613 43 1 5.3752 0.1941 3.0906 44 1 6.0382 -0.8965 5.4314 45 1 7.0068 0.5946 5.3500 46 1 7.0174 -1.5188 7.5556 47 1 8.0294 -0.0562 7.6279 48 1 9.3923 -2.2119 10.2841 49 1 3.4943 -0.1037 6.2193 50 1 3.8131 -0.8719 4.6452 51 1 1.3879 -0.8912 4.1026 52 1 1.0362 -0.1590 5.6861 53 1 0.4373 0.6108 4.1968 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069630361.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:53:03 Heat of formation + Delta-G solvation = 74.205225 kcal Electronic energy + Delta-G solvation = -30803.738589 eV Core-core repulsion = 26903.546913 eV Total energy + Delta-G solvation = -3900.191676 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.222 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.08146 -40.60425 -38.43385 -36.60119 -35.82955 -35.41153 -33.56395 -33.55923 -31.43763 -30.85400 -29.25658 -28.09533 -27.49230 -25.57220 -24.47439 -24.11071 -23.33069 -22.60593 -22.25848 -20.73502 -20.38126 -18.53054 -18.24058 -17.96334 -17.29962 -16.73489 -16.39359 -16.16402 -16.05174 -15.81064 -15.62383 -15.49359 -15.13164 -14.85223 -14.61539 -14.40966 -14.32977 -14.14828 -13.85486 -13.70953 -13.61568 -13.46007 -13.30293 -13.04689 -12.98058 -12.92269 -12.74616 -12.73982 -12.50027 -12.45495 -12.39851 -12.16834 -12.07896 -11.98271 -11.68099 -11.58526 -11.30298 -11.05967 -10.88483 -10.53678 -10.51390 -9.55463 -9.28979 -9.18261 -8.18159 -6.26260 1.09819 1.41448 1.43703 1.50426 1.93560 2.07501 2.12574 2.15523 2.42349 2.87394 2.91371 3.17185 3.36805 3.45870 3.81687 3.85099 3.89377 3.96311 4.10557 4.16665 4.22094 4.34464 4.37407 4.39457 4.42789 4.47274 4.48046 4.53857 4.57131 4.71034 4.73520 4.79231 4.81320 4.85649 4.88821 4.90522 4.95487 4.97198 4.99668 5.10464 5.14441 5.24509 5.40157 5.44092 5.47832 5.62820 5.79775 5.82525 5.90559 5.92909 6.10634 6.19397 6.23848 6.32240 6.84305 6.94734 7.20026 7.42073 8.92519 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.021234 B = 0.002156 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.302407 B =12983.412953 C =13357.382163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.441 5.441 4 C -0.045 4.045 5 C -0.061 4.061 6 N -0.531 5.531 7 C 0.200 3.800 8 C 0.140 3.860 9 N -0.520 5.520 10 C 0.076 3.924 11 C 0.066 3.934 12 N -0.558 5.558 13 C 0.075 3.925 14 C 0.025 3.975 15 H 0.117 0.883 16 C 0.267 3.733 17 N -0.519 5.519 18 C 0.039 3.961 19 C -0.538 4.538 20 H 0.053 0.947 21 C 0.012 3.988 22 N -0.923 5.923 23 Si 0.947 3.053 24 H -0.261 1.261 25 H -0.282 1.282 26 H -0.283 1.283 27 C 0.061 3.939 28 C 0.085 3.915 29 H 0.031 0.969 30 C -0.140 4.140 31 H 0.058 0.942 32 H 0.097 0.903 33 H 0.053 0.947 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.205 0.795 37 H 0.177 0.823 38 H 0.048 0.952 39 H 0.116 0.884 40 H 0.072 0.928 41 H 0.018 0.982 42 H 0.070 0.930 43 H 0.050 0.950 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.037 0.963 47 H -0.001 1.001 48 H 0.264 0.736 49 H 0.085 0.915 50 H 0.056 0.944 51 H 0.075 0.925 52 H 0.071 0.929 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.613 -2.466 -24.920 31.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.027 4.027 3 N -0.123 5.123 4 C -0.179 4.179 5 C -0.208 4.208 6 N -0.251 5.251 7 C -0.063 4.063 8 C 0.012 3.988 9 N -0.247 5.247 10 C -0.053 4.053 11 C -0.062 4.062 12 N -0.283 5.283 13 C -0.054 4.054 14 C 0.004 3.996 15 H 0.134 0.866 16 C -0.049 4.049 17 N -0.196 5.196 18 C 0.000 4.000 19 C -0.576 4.576 20 H 0.071 0.929 21 C -0.187 4.187 22 N -0.563 5.563 23 Si 0.773 3.227 24 H -0.186 1.186 25 H -0.207 1.207 26 H -0.209 1.209 27 C -0.067 4.067 28 C -0.024 4.024 29 H 0.049 0.951 30 C -0.198 4.198 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.072 0.928 34 H 0.129 0.871 35 H 0.118 0.882 36 H 0.222 0.778 37 H 0.194 0.806 38 H 0.066 0.934 39 H 0.134 0.866 40 H 0.090 0.910 41 H 0.036 0.964 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.055 0.945 47 H 0.018 0.982 48 H 0.073 0.927 49 H 0.104 0.896 50 H 0.074 0.926 51 H 0.094 0.906 52 H 0.090 0.910 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.236 -0.419 -23.953 30.724 hybrid contribution 0.438 -0.458 0.504 0.810 sum -18.798 -0.877 -23.449 30.066 Atomic orbital electron populations 1.22130 0.93182 1.04291 1.02455 1.22149 0.96184 0.78310 1.06062 1.45623 1.46445 1.13220 1.06977 1.23198 1.06579 0.93845 0.94271 1.22622 1.08198 0.98759 0.91255 1.70222 1.18672 1.22426 1.13828 1.22970 1.04660 0.86977 0.91694 1.20460 0.94618 0.98165 0.85584 1.62383 1.02235 1.45070 1.14967 1.21918 0.89603 0.94058 0.99704 1.22071 0.97466 0.99357 0.87269 1.62074 1.03817 1.47614 1.14787 1.22029 0.93889 0.98661 0.90835 1.19167 1.03120 0.81595 0.95764 0.86572 1.29401 0.90454 0.94861 0.90138 1.80975 1.11695 1.14926 1.12032 1.18981 0.91958 0.95208 0.93820 1.21507 1.11540 1.31566 0.93009 0.92864 1.25702 0.94984 0.95093 1.02948 1.70025 1.15517 1.34035 1.36717 0.85768 0.78431 0.77786 0.80703 1.18569 1.20734 1.20891 1.22314 0.88089 0.94983 1.01293 1.21725 0.96103 0.98017 0.86516 0.95060 1.21844 0.94391 1.00369 1.03203 0.92265 0.88479 0.92750 0.87119 0.88209 0.77799 0.80588 0.93372 0.86593 0.90966 0.96357 0.91133 0.93205 0.90666 0.90945 0.94474 0.98241 0.92719 0.89629 0.92582 0.90615 0.91024 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 10.23 71.98 0.74 -0.19 16 2 C 0.09 0.74 6.46 86.38 0.56 1.30 16 3 N -0.44 -6.61 2.76 -514.29 -1.42 -8.03 16 4 C -0.04 -0.65 11.57 83.09 0.96 0.31 16 5 C -0.06 -1.22 11.87 83.52 0.99 -0.23 16 6 N -0.53 -13.59 10.69 -188.14 -2.01 -15.61 16 7 C 0.20 4.11 5.77 138.13 0.80 4.91 16 8 C 0.14 2.56 4.72 85.56 0.40 2.96 16 9 N -0.52 -10.23 4.63 -875.02 -4.05 -14.27 16 10 C 0.08 1.87 5.25 86.31 0.45 2.33 16 11 C 0.07 1.63 5.56 86.31 0.48 2.11 16 12 N -0.56 -14.91 4.31 -895.69 -3.86 -18.77 16 13 C 0.07 2.17 4.38 86.30 0.38 2.55 16 14 C 0.03 0.93 2.26 -12.60 -0.03 0.90 16 15 H 0.12 3.85 6.77 -2.39 -0.02 3.83 16 16 C 0.27 11.42 13.64 89.44 1.22 12.64 16 17 N -0.52 -24.38 18.54 20.01 0.37 -24.01 16 18 C 0.04 1.81 4.42 29.85 0.13 1.94 16 19 C -0.54 -28.55 8.60 25.60 0.22 -28.33 16 20 H 0.05 2.80 7.59 -2.91 -0.02 2.78 16 21 C 0.01 0.64 5.46 84.65 0.46 1.10 16 22 N -0.92 -53.01 13.29 21.45 0.28 -52.72 16 23 Si 0.95 43.48 29.54 68.60 2.03 45.51 16 24 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 25 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 26 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 27 C 0.06 1.33 4.72 86.31 0.41 1.74 16 28 C 0.08 1.66 2.56 44.92 0.11 1.77 16 29 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 30 C -0.14 -1.81 8.86 71.98 0.64 -1.17 16 31 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.10 0.20 8.14 -2.38 -0.02 0.18 16 33 H 0.05 0.42 7.09 -2.39 -0.02 0.41 16 34 H 0.11 0.45 8.12 -2.39 -0.02 0.44 16 35 H 0.10 0.86 8.06 -2.39 -0.02 0.84 16 36 H 0.21 1.40 8.06 -2.91 -0.02 1.38 16 37 H 0.18 2.86 8.06 -2.91 -0.02 2.84 16 38 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.12 1.50 5.28 -2.39 -0.01 1.48 16 40 H 0.07 1.91 6.38 -2.38 -0.02 1.90 16 41 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.07 1.82 8.00 -2.39 -0.02 1.80 16 43 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.08 1.93 7.99 -2.39 -0.02 1.91 16 45 H 0.07 2.19 7.84 -2.39 -0.02 2.17 16 46 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 48 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 49 H 0.09 1.88 6.74 -2.39 -0.02 1.87 16 50 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 51 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 52 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 53 H 0.07 0.72 6.45 -2.38 -0.02 0.70 16 Total: -1.00 -71.07 421.70 1.15 -69.93 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.88 Total: 11.34 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 8.92 Total: 6.64 kcal Atomic # 7 Polarization: -122.73 SS G_CDS: -10.68 Total: -133.42 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -71.07 1.15 -69.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069630361.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.133 kcal (2) G-P(sol) polarization free energy of solvation -71.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds