Wall clock time and date at job start Fri Apr 10 2020 14:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.52713 * 2 1 4 4 C 1.53039 * 109.49893 * 239.92036 * 2 1 3 5 5 C 1.53044 * 109.53645 * 301.41306 * 4 2 1 6 6 H 1.08999 * 109.49780 * 58.58708 * 5 4 2 7 7 C 1.53004 * 109.49619 * 178.68388 * 5 4 2 8 8 C 1.53191 * 109.31320 * 298.63753 * 5 4 2 9 9 N 1.46923 * 108.78042 * 54.63168 * 8 5 4 10 10 C 1.34769 * 120.62937 * 126.41177 * 9 8 5 11 11 O 1.21288 * 120.00045 * 179.97438 * 10 9 8 12 12 C 1.50695 * 120.00306 * 359.97438 * 10 9 8 13 13 N 1.46900 * 109.47554 * 179.97438 * 12 10 9 14 14 C 1.46904 * 110.99728 * 66.04413 * 13 12 10 15 15 C 1.50704 * 109.47016 * 63.06607 * 14 13 12 16 16 H 1.08000 * 120.00161 * 5.01680 * 15 14 13 17 17 C 1.37876 * 119.99566 * 185.02248 * 15 14 13 18 18 N 1.31512 * 120.00728 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99704 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46897 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47296 * 119.99879 * 19 17 15 22 22 H 1.48507 * 109.47150 * 240.00047 * 19 17 15 23 23 C 1.46899 * 111.00172 * 190.00025 * 13 12 10 24 24 C 1.50706 * 109.46966 * 163.95981 * 23 13 12 25 25 C 1.38228 * 119.61835 * 94.72944 * 24 23 13 26 26 C 1.38626 * 119.15871 * 179.75500 * 25 24 23 27 27 C 1.38665 * 118.42331 * 0.50607 * 26 25 24 28 28 C 1.38187 * 119.16028 * 359.73277 * 27 26 25 29 29 N 1.31855 * 119.61754 * 274.99841 * 24 23 13 30 30 C 1.46928 * 118.73615 * 306.39780 * 9 8 5 31 31 H 1.08995 * 109.47118 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47230 * 300.08294 * 1 2 3 33 33 H 1.08998 * 109.46801 * 60.07731 * 1 2 3 34 34 H 1.08999 * 109.45975 * 61.43587 * 4 2 1 35 35 H 1.08998 * 109.46057 * 181.39161 * 4 2 1 36 36 H 1.09002 * 109.47132 * 60.00046 * 7 5 4 37 37 H 1.08996 * 109.47013 * 180.02562 * 7 5 4 38 38 H 1.09002 * 109.47030 * 300.00380 * 7 5 4 39 39 H 1.09005 * 109.58298 * 294.84692 * 8 5 4 40 40 H 1.09005 * 109.58448 * 174.42607 * 8 5 4 41 41 H 1.09004 * 109.47299 * 300.00007 * 12 10 9 42 42 H 1.09000 * 109.47359 * 60.00045 * 12 10 9 43 43 H 1.09004 * 109.46696 * 183.05998 * 14 13 12 44 44 H 1.08994 * 109.47240 * 303.06135 * 14 13 12 45 45 H 0.96995 * 120.00237 * 180.02562 * 18 17 15 46 46 H 1.08999 * 109.47164 * 283.95807 * 23 13 12 47 47 H 1.08998 * 109.47419 * 43.96029 * 23 13 12 48 48 H 1.08005 * 120.42273 * 359.97438 * 25 24 23 49 49 H 1.08003 * 120.78960 * 180.26283 * 26 25 24 50 50 H 1.07995 * 120.42166 * 179.71066 * 27 26 25 51 51 H 1.08007 * 119.61439 * 179.97438 * 28 27 26 52 52 H 1.08995 * 109.58675 * 293.81202 * 30 9 8 53 53 H 1.09000 * 109.70280 * 173.46259 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0409 -0.7230 -1.2483 5 6 1.5030 -2.1558 -1.2660 6 1 0.4133 -2.1355 -1.2541 7 6 1.9875 -2.8675 -2.5308 8 6 2.0140 -2.9040 -0.0307 9 7 1.6516 -2.1382 1.1696 10 6 0.9748 -2.7221 2.1782 11 8 0.6819 -2.0792 3.1642 12 6 0.5819 -4.1737 2.0812 13 7 -0.1398 -4.5682 3.2983 14 6 -1.4253 -3.8642 3.3995 15 6 -2.3060 -4.2577 2.2417 16 1 -1.9798 -5.0201 1.5497 17 6 -3.5282 -3.6443 2.0657 18 7 -3.9257 -2.7162 2.9085 19 14 -4.6197 -4.1316 0.6301 20 1 -3.9478 -5.1903 -0.1655 21 1 -5.9145 -4.6451 1.1447 22 1 -4.8641 -2.9463 -0.2305 23 6 -0.3313 -6.0238 3.3483 24 6 -0.7058 -6.4332 4.7495 25 6 -2.0390 -6.5703 5.0880 26 6 -2.3724 -6.9523 6.3782 27 6 -1.3484 -7.1730 7.2867 28 6 -0.0385 -7.0113 6.8772 29 7 0.2420 -6.6515 5.6399 30 6 2.0413 -0.7238 1.2496 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5151 0.8892 33 1 -0.3633 0.5126 -0.8907 34 1 1.6988 -0.1957 -2.1389 35 1 3.1305 -0.7443 -1.2353 36 1 3.0772 -2.8886 -2.5412 37 1 1.6038 -3.8876 -2.5432 38 1 1.6261 -2.3331 -3.4094 39 1 3.0980 -3.0042 -0.0867 40 1 1.5554 -3.8919 0.0137 41 1 -0.0618 -4.3187 1.2135 42 1 1.4774 -4.7862 1.9756 43 1 -1.9141 -4.1335 4.3358 44 1 -1.2531 -2.7882 3.3758 45 1 -4.7857 -2.2850 2.7848 46 1 -1.1279 -6.3093 2.6613 47 1 0.5939 -6.5222 3.0592 48 1 -2.8109 -6.3855 4.3556 49 1 -3.4055 -7.0714 6.6699 50 1 -1.5717 -7.4671 8.3016 51 1 0.7648 -7.1808 7.5790 52 1 3.1274 -0.6463 1.2981 53 1 1.6027 -0.2715 2.1390 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089920240.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:40 Heat of formation + Delta-G solvation = -18.250026 kcal Electronic energy + Delta-G solvation = -32035.497033 eV Core-core repulsion = 28099.003446 eV Total energy + Delta-G solvation = -3936.493587 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.216 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.43663 -40.96465 -39.19738 -37.67336 -34.69427 -34.50861 -34.20339 -33.30083 -32.57005 -29.77966 -28.83318 -27.74814 -27.50444 -26.54027 -25.73329 -24.30685 -23.75067 -22.48503 -21.79665 -20.70474 -19.43660 -18.78134 -18.00963 -17.45547 -17.28589 -16.78135 -16.74824 -16.32089 -16.16564 -16.11586 -15.87429 -15.35584 -15.03258 -14.94755 -14.84782 -14.40324 -14.24601 -14.15172 -14.04349 -13.80006 -13.66781 -13.15468 -13.02106 -12.90659 -12.82086 -12.74979 -12.59944 -12.57336 -12.46521 -12.39988 -12.24825 -11.94613 -11.93464 -11.74097 -11.58827 -11.37383 -11.14010 -10.71372 -10.65699 -10.43390 -10.24321 -9.82640 -9.46233 -8.95498 -8.10059 -6.30605 0.28101 0.47951 1.33832 1.35326 1.46179 1.81941 2.10251 2.36407 2.89323 3.14260 3.48756 3.55880 3.67090 3.79671 3.91909 3.99247 4.02652 4.03199 4.08319 4.23166 4.28712 4.34079 4.37782 4.43960 4.54973 4.57654 4.63772 4.69996 4.71739 4.74557 4.78587 4.84343 4.88842 4.91234 4.92604 4.98791 5.06890 5.13000 5.15627 5.25218 5.29280 5.33584 5.34696 5.39794 5.43770 5.44273 5.57729 5.72576 5.86613 5.91612 6.02860 6.23030 6.39069 6.61568 6.91580 7.20636 7.39736 7.43587 8.92264 Molecular weight = 345.22amu Principal moments of inertia in cm(-1) A = 0.009982 B = 0.003939 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.294623 B = 7105.818988 C = 8586.679901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.099 0.901 4 C -0.099 4.099 5 C -0.113 4.113 6 H 0.052 0.948 7 C -0.137 4.137 8 C 0.109 3.891 9 N -0.612 5.612 10 C 0.516 3.484 11 O -0.571 6.571 12 C 0.052 3.948 13 N -0.528 5.528 14 C 0.206 3.794 15 C -0.545 4.545 16 H 0.066 0.934 17 C 0.014 3.986 18 N -0.926 5.926 19 Si 0.950 3.050 20 H -0.256 1.256 21 H -0.280 1.280 22 H -0.286 1.286 23 C 0.110 3.890 24 C 0.132 3.868 25 C -0.170 4.170 26 C -0.087 4.087 27 C -0.172 4.172 28 C 0.080 3.920 29 N -0.497 5.497 30 C 0.114 3.886 31 H 0.033 0.967 32 H 0.026 0.974 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.117 0.883 43 H -0.007 1.007 44 H 0.013 0.987 45 H 0.260 0.740 46 H 0.055 0.945 47 H 0.092 0.908 48 H 0.119 0.881 49 H 0.152 0.848 50 H 0.169 0.831 51 H 0.183 0.817 52 H 0.088 0.912 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.849 -4.254 -7.196 15.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.117 0.883 4 C -0.137 4.137 5 C -0.132 4.132 6 H 0.071 0.929 7 C -0.195 4.195 8 C -0.013 4.013 9 N -0.346 5.346 10 C 0.305 3.695 11 O -0.449 6.449 12 C -0.079 4.079 13 N -0.252 5.252 14 C 0.080 3.920 15 C -0.584 4.584 16 H 0.084 0.916 17 C -0.185 4.185 18 N -0.566 5.566 19 Si 0.775 3.225 20 H -0.180 1.180 21 H -0.206 1.206 22 H -0.212 1.212 23 C -0.018 4.018 24 C -0.006 4.006 25 C -0.190 4.190 26 C -0.113 4.113 27 C -0.192 4.192 28 C -0.077 4.077 29 N -0.208 5.208 30 C -0.008 4.008 31 H 0.052 0.948 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.113 0.887 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.135 0.865 43 H 0.011 0.989 44 H 0.031 0.969 45 H 0.069 0.931 46 H 0.073 0.927 47 H 0.110 0.890 48 H 0.137 0.863 49 H 0.169 0.831 50 H 0.187 0.813 51 H 0.200 0.800 52 H 0.106 0.894 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.729 -3.567 -6.482 15.596 hybrid contribution -2.853 0.058 -0.659 2.928 sum 10.877 -3.508 -7.141 13.476 Atomic orbital electron populations 1.21782 0.96836 1.00685 1.00677 1.21488 0.94640 1.00415 0.95191 0.88262 1.21572 1.01371 0.94154 0.96561 1.21561 1.00173 0.96245 0.95206 0.92939 1.21710 1.02150 1.00130 0.95477 1.22047 1.01453 0.95050 0.82750 1.48100 1.56471 1.11673 1.18397 1.20906 0.76382 0.90048 0.82145 1.90638 1.54663 1.66203 1.33364 1.21847 0.99574 0.92785 0.93688 1.62054 1.22342 1.04919 1.35858 1.19415 0.84270 0.93896 0.94431 1.21940 1.03097 1.21272 1.12138 0.91591 1.25777 0.99414 0.94720 0.98590 1.70145 1.21238 1.26752 1.38418 0.85635 0.78969 0.78292 0.79620 1.17953 1.20612 1.21178 1.20843 1.01300 0.88596 0.91070 1.21102 0.89338 0.94232 0.95897 1.22142 0.97493 1.00670 0.98736 1.21892 1.01443 0.95450 0.92487 1.22444 0.93310 1.01594 1.01836 1.23304 0.97146 0.94817 0.92415 1.67445 1.38029 1.11787 1.03493 1.21634 0.99961 0.80699 0.98514 0.94797 0.95440 0.91461 0.90637 0.89583 0.90775 0.92449 0.91974 0.88720 0.89711 0.91447 0.86515 0.98858 0.96929 0.93075 0.92675 0.88993 0.86336 0.83060 0.81323 0.80050 0.89368 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.40 8.70 71.98 0.63 -3.77 16 2 C -0.10 -2.29 3.21 -10.72 -0.03 -2.32 16 3 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 4 C -0.10 -1.74 4.71 30.62 0.14 -1.59 16 5 C -0.11 -2.26 2.53 -10.71 -0.03 -2.29 16 6 H 0.05 1.39 6.33 -2.39 -0.02 1.37 16 7 C -0.14 -1.95 9.20 71.98 0.66 -1.29 16 8 C 0.11 2.41 5.62 86.36 0.49 2.90 16 9 N -0.61 -19.20 2.41 -818.92 -1.97 -21.17 16 10 C 0.52 21.64 7.40 87.66 0.65 22.29 16 11 O -0.57 -30.19 13.74 -3.06 -0.04 -30.23 16 12 C 0.05 2.03 3.61 85.56 0.31 2.33 16 13 N -0.53 -24.42 4.39 -909.93 -4.00 -28.42 16 14 C 0.21 11.56 4.55 85.56 0.39 11.94 16 15 C -0.55 -29.81 7.34 25.60 0.19 -29.62 16 16 H 0.07 3.40 5.95 -2.91 -0.02 3.38 16 17 C 0.01 0.81 5.46 84.65 0.46 1.27 16 18 N -0.93 -57.09 13.29 21.45 0.28 -56.81 16 19 Si 0.95 43.54 29.54 68.60 2.03 45.56 16 20 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 22 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 23 C 0.11 4.42 5.13 85.56 0.44 4.86 16 24 C 0.13 5.32 5.84 42.55 0.25 5.56 16 25 C -0.17 -6.67 8.45 22.36 0.19 -6.48 16 26 C -0.09 -2.73 10.18 22.46 0.23 -2.50 16 27 C -0.17 -4.59 10.11 22.36 0.23 -4.37 16 28 C 0.08 2.40 11.18 84.67 0.95 3.34 16 29 N -0.50 -18.80 10.27 -183.87 -1.89 -20.69 16 30 C 0.11 3.24 5.82 86.36 0.50 3.74 16 31 H 0.03 1.24 5.97 -2.39 -0.01 1.22 16 32 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.08 1.88 5.93 -2.38 -0.01 1.86 16 41 H 0.07 2.68 6.16 -2.39 -0.01 2.67 16 42 H 0.12 3.60 7.66 -2.39 -0.02 3.59 16 43 H -0.01 -0.41 6.54 -2.39 -0.02 -0.43 16 44 H 0.01 0.83 5.83 -2.39 -0.01 0.81 16 45 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 46 H 0.06 2.28 6.04 -2.39 -0.01 2.27 16 47 H 0.09 3.18 7.81 -2.39 -0.02 3.17 16 48 H 0.12 5.08 8.06 -2.91 -0.02 5.06 16 49 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 50 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16 51 H 0.18 3.95 8.06 -2.91 -0.02 3.93 16 52 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 53 H 0.05 1.95 7.01 -2.39 -0.02 1.93 16 Total: -1.00 -79.33 407.20 1.93 -77.40 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: 0.89 Total: 30.34 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 6.63 Total: 4.01 kcal Atomic # 7 Polarization: -119.51 SS G_CDS: -7.58 Total: -127.08 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.04 Total: -30.23 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -79.33 1.93 -77.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089920240.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.147 kcal (2) G-P(sol) polarization free energy of solvation -79.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds