Wall clock time and date at job start Fri Apr 10 2020 14:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38239 * 120.00573 * 2 1 4 4 C 1.38224 * 120.01100 * 180.25737 * 3 2 1 5 5 C 1.38263 * 120.01964 * 359.48336 * 4 3 2 6 6 C 1.50704 * 119.99762 * 180.25733 * 5 4 3 7 7 S 1.81400 * 109.46899 * 90.00490 * 6 5 4 8 8 O 1.42104 * 108.57544 * 294.48739 * 7 6 5 9 9 O 1.42098 * 108.57995 * 65.51133 * 7 6 5 10 10 C 1.81399 * 101.92017 * 180.02562 * 7 6 5 11 11 C 1.52992 * 109.47392 * 179.97438 * 10 7 6 12 12 C 1.50699 * 109.47401 * 179.97438 * 11 10 7 13 13 H 1.08000 * 120.00026 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00119 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00191 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 119.99979 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47171 * 90.00060 * 16 14 12 18 18 H 1.48497 * 109.47084 * 210.00142 * 16 14 12 19 19 H 1.48501 * 109.46986 * 329.99884 * 16 14 12 20 20 C 1.38204 * 120.00696 * 0.23940 * 5 4 3 21 21 C 1.38303 * 120.00733 * 179.72162 * 2 1 3 22 22 Br 1.89099 * 120.00925 * 359.97438 * 21 2 1 23 23 H 1.08995 * 109.47074 * 270.27856 * 1 2 3 24 24 H 1.09004 * 109.46973 * 30.28012 * 1 2 3 25 25 H 1.09002 * 109.46840 * 150.27763 * 1 2 3 26 26 H 1.07997 * 119.99629 * 359.97438 * 3 2 1 27 27 H 1.08002 * 119.99433 * 179.76937 * 4 3 2 28 28 H 1.09001 * 109.47047 * 210.00275 * 6 5 4 29 29 H 1.08997 * 109.46713 * 330.00242 * 6 5 4 30 30 H 1.09003 * 109.47286 * 300.00155 * 10 7 6 31 31 H 1.09008 * 109.47241 * 59.99446 * 10 7 6 32 32 H 1.09008 * 109.47147 * 299.99919 * 11 10 7 33 33 H 1.08999 * 109.47556 * 59.99562 * 11 10 7 34 34 H 0.97002 * 120.00034 * 179.97438 * 15 14 12 35 35 H 1.07998 * 120.00225 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1972 -0.0054 5 6 4.2724 0.0002 0.0000 6 6 5.7794 0.0009 0.0000 7 16 6.3840 0.0088 1.7103 8 8 6.0079 1.2372 2.3177 9 8 6.0091 -1.2144 2.3287 10 6 8.1823 0.0095 1.4720 11 6 8.8774 0.0166 2.8349 12 6 10.3713 0.0165 2.6369 13 1 10.7838 0.0122 1.6388 14 6 11.2116 0.0229 3.7300 15 7 12.5154 0.0233 3.5573 16 14 10.4983 0.0310 5.4565 17 1 10.3106 -1.3668 5.9211 18 1 11.4291 0.7367 6.3734 19 1 9.1879 0.7298 5.4473 20 6 3.5820 -1.1971 0.0058 21 6 2.1986 -1.1976 0.0058 22 35 1.2536 -2.8355 0.0145 23 1 -0.3633 0.0050 1.0276 24 1 -0.3633 0.8875 -0.5182 25 1 -0.3633 -0.8925 -0.5095 26 1 1.6583 2.1324 -0.0004 27 1 4.1203 2.1327 -0.0091 28 1 6.1432 -0.8912 -0.5098 29 1 6.1422 0.8888 -0.5178 30 1 8.4758 -0.8826 0.9187 31 1 8.4742 0.8973 0.9109 32 1 8.5839 0.9090 3.3878 33 1 8.5856 -0.8709 3.3963 34 1 13.1065 0.0282 4.3263 35 1 4.1225 -2.1321 0.0096 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225620368.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:53:34 Heat of formation + Delta-G solvation = -79.779992 kcal Electronic energy + Delta-G solvation = -19536.697252 eV Core-core repulsion = 16285.917164 eV Total energy + Delta-G solvation = -3250.780088 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 346.003 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.65859 -37.97722 -37.03002 -35.86826 -35.32102 -33.45905 -33.19260 -30.72766 -30.43873 -27.95027 -26.20959 -23.73329 -23.12245 -21.89013 -19.91916 -19.21324 -17.67254 -17.38435 -17.37896 -16.70057 -16.51649 -16.34876 -15.96013 -15.28488 -15.04797 -14.81647 -14.56302 -14.13767 -13.92029 -13.79493 -13.36892 -13.16441 -13.11363 -13.00879 -13.00147 -12.87506 -12.59337 -12.29411 -12.18976 -12.12715 -11.94412 -11.74438 -11.60101 -11.16124 -11.06931 -10.84501 -9.89909 -9.57657 -8.37017 -6.41969 -1.09419 0.01235 0.19078 0.55685 1.30813 1.32963 1.43412 1.86768 2.29130 2.43356 2.68625 2.97313 3.07331 3.33093 3.67044 3.83794 3.93798 3.97023 4.09655 4.15875 4.26765 4.46178 4.59540 4.63774 4.65794 4.75161 4.83547 5.03485 5.11155 5.15202 5.18597 5.28759 5.33508 5.48300 5.72434 6.16822 6.64464 7.22693 8.78385 Molecular weight = 346.00amu Principal moments of inertia in cm(-1) A = 0.024411 B = 0.002710 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.745900 B =10330.793277 C =10788.457115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.055 4.055 3 C -0.117 4.117 4 C -0.092 4.092 5 C -0.108 4.108 6 C -0.545 4.545 7 S 2.396 3.604 8 O -0.974 6.974 9 O -0.978 6.978 10 C -0.577 4.577 11 C -0.018 4.018 12 C -0.527 4.527 13 H 0.054 0.946 14 C 0.014 3.986 15 N -0.939 5.939 16 Si 0.923 3.077 17 H -0.263 1.263 18 H -0.273 1.273 19 H -0.253 1.253 20 C -0.088 4.088 21 C -0.113 4.113 22 Br -0.042 7.042 23 H 0.085 0.915 24 H 0.095 0.905 25 H 0.077 0.923 26 H 0.166 0.834 27 H 0.157 0.843 28 H 0.175 0.825 29 H 0.183 0.817 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.029 0.971 33 H 0.026 0.974 34 H 0.270 0.730 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.715 -0.620 -12.977 30.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.058 4.058 3 C -0.135 4.135 4 C -0.112 4.112 5 C -0.110 4.110 6 C -0.675 4.675 7 S 2.586 3.414 8 O -0.971 6.971 9 O -0.975 6.975 10 C -0.707 4.707 11 C -0.057 4.057 12 C -0.566 4.566 13 H 0.073 0.927 14 C -0.184 4.184 15 N -0.579 5.579 16 Si 0.746 3.254 17 H -0.187 1.187 18 H -0.198 1.198 19 H -0.177 1.177 20 C -0.109 4.109 21 C -0.192 4.192 22 Br 0.044 6.956 23 H 0.104 0.896 24 H 0.114 0.886 25 H 0.096 0.904 26 H 0.184 0.816 27 H 0.174 0.826 28 H 0.193 0.807 29 H 0.200 0.800 30 H 0.165 0.835 31 H 0.167 0.833 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.079 0.921 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -28.374 -1.244 -12.058 30.855 hybrid contribution 1.203 0.106 0.230 1.229 sum -27.171 -1.138 -11.828 29.656 Atomic orbital electron populations 1.21092 0.88288 1.04859 1.04001 1.20288 0.98254 0.91314 0.95940 1.21438 0.93729 0.98491 0.99850 1.21704 0.95387 0.98294 0.95780 1.19124 0.92677 0.94048 1.05176 1.29197 1.00165 1.16254 1.21851 1.08590 0.78801 0.74196 0.79805 1.93496 1.82223 1.46197 1.75168 1.93501 1.82275 1.46822 1.74873 1.30070 1.20568 1.13114 1.06927 1.19362 0.96238 0.97613 0.92446 1.21235 0.89936 1.51069 0.94342 0.92743 1.25835 0.95066 0.94107 1.03407 1.69999 1.03711 1.51814 1.32398 0.86058 0.79573 0.79760 0.80038 1.18739 1.19784 1.17693 1.21308 0.92943 0.99134 0.97519 1.21886 0.94607 0.92395 1.10339 1.96670 1.74995 1.26318 1.97666 0.89645 0.88647 0.90449 0.81619 0.82572 0.80745 0.79962 0.83526 0.83282 0.95281 0.95594 0.92127 0.83977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 9.55 71.23 0.68 -0.83 16 2 C -0.06 -0.98 5.88 -19.85 -0.12 -1.10 16 3 C -0.12 -1.89 9.70 22.27 0.22 -1.67 16 4 C -0.09 -1.72 9.70 22.27 0.22 -1.51 16 5 C -0.11 -2.29 5.14 -19.87 -0.10 -2.39 16 6 C -0.54 -9.71 5.93 71.24 0.42 -9.29 16 7 S 2.40 72.56 4.70 -56.49 -0.27 72.29 16 8 O -0.97 -35.42 18.10 -127.37 -2.30 -37.73 16 9 O -0.98 -36.64 18.10 -127.37 -2.31 -38.95 16 10 C -0.58 -19.10 5.74 71.98 0.41 -18.69 16 11 C -0.02 -0.85 4.05 29.85 0.12 -0.73 16 12 C -0.53 -29.61 9.66 25.60 0.25 -29.36 16 13 H 0.05 3.21 7.99 -2.91 -0.02 3.19 16 14 C 0.01 0.84 5.47 84.66 0.46 1.30 16 15 N -0.94 -57.73 13.96 21.45 0.30 -57.43 16 16 Si 0.92 44.51 27.47 68.60 1.88 46.39 16 17 H -0.26 -12.21 7.11 99.48 0.71 -11.51 16 18 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.25 -11.77 6.54 99.48 0.65 -11.12 16 20 C -0.09 -1.99 9.44 22.29 0.21 -1.78 16 21 C -0.11 -2.39 6.22 22.31 0.14 -2.26 16 22 Br -0.04 -0.81 31.79 -20.37 -0.65 -1.45 16 23 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.09 0.73 8.09 -2.38 -0.02 0.71 16 25 H 0.08 0.94 6.65 -2.39 -0.02 0.93 16 26 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 27 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 28 H 0.17 2.07 8.09 -2.39 -0.02 2.06 16 29 H 0.18 1.90 8.09 -2.39 -0.02 1.88 16 30 H 0.15 4.17 8.14 -2.39 -0.02 4.15 16 31 H 0.15 4.16 8.14 -2.39 -0.02 4.14 16 32 H 0.03 1.38 7.20 -2.38 -0.02 1.36 16 33 H 0.03 1.22 7.57 -2.39 -0.02 1.20 16 34 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 35 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -78.27 331.93 0.60 -77.67 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.03 Total: 7.50 kcal Atomic # 6 Polarization: -71.21 SS G_CDS: 2.91 Total: -68.30 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: 0.30 Total: -57.43 kcal Atomic # 8 Polarization: -72.06 SS G_CDS: -4.61 Total: -76.67 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.88 Total: 46.39 kcal Atomic # 16 Polarization: 72.56 SS G_CDS: -0.27 Total: 72.29 kcal Atomic # 35 Polarization: -0.81 SS G_CDS: -0.65 Total: -1.45 kcal Total: -78.27 0.60 -77.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225620368.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.111 kcal (2) G-P(sol) polarization free energy of solvation -78.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds