Wall clock time and date at job start Fri Apr 10 2020 14:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31486 * 1 3 3 Si 1.86802 * 119.99607 * 2 1 4 4 H 1.48498 * 109.47069 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47436 * 300.00233 * 3 2 1 6 6 H 1.48501 * 109.46866 * 59.99989 * 3 2 1 7 7 C 1.38750 * 120.00275 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00061 * 180.02562 * 7 2 1 9 9 O 1.34751 * 120.00335 * 359.97438 * 7 2 1 10 10 C 1.35489 * 117.00444 * 185.06818 * 9 7 2 11 11 C 1.38775 * 120.17934 * 354.39953 * 10 9 7 12 12 C 1.38052 * 120.10103 * 180.02562 * 11 10 9 13 13 C 1.38654 * 120.47281 * 359.97438 * 12 11 10 14 14 C 1.37720 * 120.35757 * 359.73568 * 13 12 11 15 15 C 1.39999 * 119.88907 * 0.53686 * 14 13 12 16 16 C 1.46765 * 120.22883 * 179.74437 * 15 14 13 17 17 C 1.35327 * 120.00141 * 359.72314 * 16 15 14 18 18 C 1.41744 * 119.99904 * 180.02562 * 17 16 15 19 19 O 1.21782 * 120.00365 * 0.02562 * 18 17 16 20 20 C 1.47819 * 119.99890 * 180.02562 * 18 17 16 21 21 C 1.39689 * 120.11714 * 359.97438 * 20 18 17 22 22 C 1.37817 * 119.90432 * 180.02562 * 21 20 18 23 23 C 1.38656 * 120.13491 * 359.73205 * 22 21 20 24 24 F 1.35108 * 119.88422 * 180.29406 * 23 22 21 25 25 C 1.38751 * 120.23090 * 0.54548 * 23 22 21 26 26 Cl 1.73602 * 119.95570 * 179.72362 * 25 23 22 27 27 C 1.37956 * 120.09308 * 359.45219 * 25 23 22 28 28 H 0.96996 * 120.00557 * 0.02562 * 1 2 3 29 29 H 1.08009 * 119.94936 * 0.02775 * 11 10 9 30 30 H 1.08006 * 119.76407 * 179.97438 * 12 11 10 31 31 H 1.07998 * 119.81838 * 180.02562 * 13 12 11 32 32 H 1.08004 * 120.05691 * 180.28310 * 14 13 12 33 33 H 1.07998 * 119.99852 * 179.72813 * 16 15 14 34 34 H 1.07998 * 120.00001 * 359.97438 * 17 16 15 35 35 H 1.08001 * 120.04224 * 0.04709 * 21 20 18 36 36 H 1.08005 * 119.93453 * 180.02562 * 22 21 20 37 37 H 1.08005 * 120.06777 * 180.29507 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3149 0.0000 0.0000 3 14 2.2488 1.6178 0.0000 4 1 3.7087 1.3466 0.0006 5 1 1.8900 2.3965 -1.2124 6 1 1.8899 2.3964 1.2125 7 6 2.0087 -1.2016 -0.0005 8 1 3.0887 -1.2015 -0.0001 9 8 1.3350 -2.3686 -0.0005 10 6 2.0690 -3.5026 0.1056 11 6 3.4552 -3.4403 0.0912 12 6 4.2014 -4.5967 0.1989 13 6 3.5761 -5.8281 0.3226 14 6 2.2016 -5.9116 0.3450 15 6 1.4301 -4.7489 0.2311 16 6 -0.0352 -4.8299 0.2484 17 6 -0.6451 -6.0319 0.3692 18 6 -2.0603 -6.1100 0.3853 19 8 -2.7274 -5.0956 0.2901 20 6 -2.7265 -7.4229 0.5178 21 6 -1.9638 -8.5881 0.6267 22 6 -2.5895 -9.8099 0.7495 23 6 -3.9739 -9.8840 0.7708 24 9 -4.5820 -11.0839 0.8973 25 6 -4.7370 -8.7308 0.6572 26 17 -6.4700 -8.8326 0.6774 27 6 -4.1206 -7.5028 0.5339 28 1 -0.4851 0.8400 -0.0004 29 1 3.9511 -2.4855 -0.0043 30 1 5.2800 -4.5420 0.1867 31 1 4.1702 -6.7260 0.4066 32 1 1.7197 -6.8728 0.4461 33 1 -0.6267 -3.9302 0.1646 34 1 -0.0536 -6.9316 0.4524 35 1 -0.8853 -8.5315 0.6150 36 1 -2.0003 -10.7111 0.8342 37 1 -4.7150 -6.6049 0.4504 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044027424.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:51:24 Heat of formation + Delta-G solvation = -45.216792 kcal Electronic energy + Delta-G solvation = -25349.786815 eV Core-core repulsion = 21191.862024 eV Total energy + Delta-G solvation = -4157.924791 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 346.056 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.30919 -40.09895 -39.33928 -38.17912 -36.77530 -36.72436 -33.65697 -32.58203 -31.38577 -31.25474 -29.41779 -28.92624 -25.65704 -25.09455 -23.45567 -22.92814 -21.73677 -20.67166 -18.77223 -18.34778 -18.16443 -17.37288 -16.83527 -16.58029 -16.09867 -15.46432 -15.19336 -14.89212 -14.50588 -14.31386 -14.25970 -14.17235 -13.97070 -13.86929 -13.62039 -13.15652 -13.09584 -12.86515 -12.75103 -11.93871 -11.88893 -11.75044 -11.67138 -11.54051 -11.24277 -11.11837 -10.98105 -10.67169 -10.53534 -9.82983 -9.70239 -9.51578 -9.36450 -9.07843 -8.99939 -8.06325 -7.31340 -6.70683 -4.26856 0.20237 0.72416 1.04495 1.69179 2.15345 2.30283 2.99544 3.00249 3.01177 3.07283 3.68512 3.75880 3.77660 4.14209 4.28615 4.42052 4.69243 4.81672 4.83697 4.94527 5.03390 5.29679 5.31435 5.44679 5.55352 5.57143 5.60336 5.74314 5.82460 5.90971 5.96582 6.04118 6.28155 6.42240 6.56147 6.59479 6.74097 6.91500 7.08341 7.13061 7.23535 7.53681 7.72131 7.92162 8.72360 9.36372 10.44812 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.014776 B = 0.002299 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.501875 B =12175.972585 C =14055.069577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.044 3.956 3 Si 0.946 3.054 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.396 4.396 8 H 0.099 0.901 9 O -0.152 6.152 10 C 0.176 3.824 11 C -0.234 4.234 12 C -0.051 4.051 13 C -0.224 4.224 14 C -0.037 4.037 15 C -0.187 4.187 16 C 0.075 3.925 17 C -0.324 4.324 18 C 0.426 3.574 19 O -0.469 6.469 20 C -0.142 4.142 21 C -0.043 4.043 22 C -0.154 4.154 23 C 0.126 3.874 24 F -0.126 7.126 25 C -0.086 4.086 26 Cl -0.049 7.049 27 C -0.033 4.033 28 H 0.276 0.724 29 H 0.132 0.868 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.120 0.880 33 H 0.138 0.862 34 H 0.124 0.876 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.709 -16.584 1.380 16.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.164 4.164 3 Si 0.769 3.231 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.471 4.471 8 H 0.116 0.884 9 O -0.052 6.052 10 C 0.118 3.882 11 C -0.253 4.253 12 C -0.069 4.069 13 C -0.243 4.243 14 C -0.055 4.055 15 C -0.188 4.188 16 C 0.056 3.944 17 C -0.343 4.343 18 C 0.311 3.689 19 O -0.350 6.350 20 C -0.144 4.144 21 C -0.061 4.061 22 C -0.172 4.172 23 C 0.106 3.894 24 F -0.104 7.104 25 C -0.114 4.114 26 Cl -0.020 7.020 27 C -0.052 4.052 28 H 0.086 0.914 29 H 0.150 0.850 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.137 0.863 33 H 0.156 0.844 34 H 0.142 0.858 35 H 0.169 0.831 36 H 0.168 0.832 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.704 -15.870 1.315 16.153 hybrid contribution 0.314 0.374 0.037 0.490 sum -2.391 -15.496 1.352 15.738 Atomic orbital electron populations 1.70011 1.06122 1.28469 1.42738 1.25426 0.95914 0.99190 0.95869 0.85575 0.79162 0.79748 0.78574 1.18861 1.19829 1.19825 1.21537 0.92137 0.80361 1.53108 0.88394 1.83850 1.35011 1.11749 1.74631 1.19540 0.90232 0.87238 0.91143 1.21174 0.93457 0.99414 1.11277 1.20976 0.98823 0.92294 0.94843 1.20570 0.94291 0.97173 1.12223 1.20989 0.93508 0.96267 0.94765 1.18064 0.92154 0.91285 1.17310 1.22665 0.93113 0.98108 0.80543 1.21876 0.94488 0.98998 1.18914 1.18925 0.89693 0.86558 0.73758 1.90713 1.68201 1.36988 1.39078 1.20815 0.93183 0.96549 1.03812 1.21485 1.01284 0.90229 0.93139 1.21124 0.91567 1.00085 1.04471 1.17659 0.90818 0.79741 1.01218 1.91549 1.83462 1.42558 1.92820 1.20895 0.86071 0.94134 1.10273 1.98393 1.08023 1.98547 1.97011 1.21239 0.94316 0.96281 0.93386 0.91379 0.85017 0.87030 0.87091 0.86254 0.84401 0.85835 0.83116 0.83228 0.82792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.29 13.67 55.48 0.76 -22.53 16 2 C 0.04 1.12 5.50 -17.51 -0.10 1.02 16 3 Si 0.95 19.11 29.55 -169.99 -5.02 14.08 16 4 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 5 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.40 -10.20 9.49 30.92 0.29 -9.91 16 8 H 0.10 2.30 5.21 -52.49 -0.27 2.03 16 9 O -0.15 -3.99 8.94 1.07 0.01 -3.99 16 10 C 0.18 3.89 6.67 -38.49 -0.26 3.64 16 11 C -0.23 -4.57 9.16 -39.45 -0.36 -4.93 16 12 C -0.05 -0.82 10.03 -39.50 -0.40 -1.22 16 13 C -0.22 -3.35 10.02 -39.62 -0.40 -3.75 16 14 C -0.04 -0.59 9.41 -39.11 -0.37 -0.95 16 15 C -0.19 -3.60 5.88 -104.90 -0.62 -4.22 16 16 C 0.07 1.42 9.17 -37.18 -0.34 1.08 16 17 C -0.32 -5.02 8.73 -39.28 -0.34 -5.36 16 18 C 0.43 6.83 6.91 -34.33 -0.24 6.60 16 19 O -0.47 -9.31 16.11 5.12 0.08 -9.23 16 20 C -0.14 -1.80 5.88 -104.91 -0.62 -2.42 16 21 C -0.04 -0.42 9.43 -39.19 -0.37 -0.79 16 22 C -0.15 -1.34 10.01 -39.58 -0.40 -1.74 16 23 C 0.13 1.33 7.28 -39.24 -0.29 1.04 16 24 F -0.13 -1.36 16.83 2.25 0.04 -1.32 16 25 C -0.09 -0.99 6.32 -39.50 -0.25 -1.24 16 26 Cl -0.05 -0.54 28.61 -51.86 -1.48 -2.02 16 27 C -0.03 -0.42 9.37 -39.16 -0.37 -0.78 16 28 H 0.28 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.13 2.54 5.64 -52.48 -0.30 2.25 16 30 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 31 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.12 1.46 6.17 -52.48 -0.32 1.14 16 33 H 0.14 3.09 7.04 -52.49 -0.37 2.72 16 34 H 0.12 1.47 4.25 -52.49 -0.22 1.25 16 35 H 0.15 1.10 6.20 -52.49 -0.33 0.78 16 36 H 0.15 0.89 8.06 -52.48 -0.42 0.47 16 37 H 0.15 1.96 7.65 -52.48 -0.40 1.56 16 LS Contribution 348.91 15.07 5.26 5.26 Total: -1.00 -29.26 348.91 -8.38 -37.64 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -2.61 Total: 6.03 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -5.40 Total: -23.92 kcal Atomic # 7 Polarization: -23.29 SS G_CDS: 0.76 Total: -22.53 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.09 Total: -13.22 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.08 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.48 Total: -2.02 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.26 -8.38 -37.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044027424.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.575 kcal (2) G-P(sol) polarization free energy of solvation -29.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds