Wall clock time and date at job start Fri Apr 10 2020 14:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31486 * 1 3 3 Si 1.86802 * 119.99607 * 2 1 4 4 H 1.48498 * 109.47069 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47436 * 300.00233 * 3 2 1 6 6 H 1.48501 * 109.46866 * 59.99989 * 3 2 1 7 7 C 1.38750 * 120.00275 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00061 * 180.02562 * 7 2 1 9 9 O 1.34751 * 120.00335 * 359.97438 * 7 2 1 10 10 C 1.35489 * 117.00444 * 185.06818 * 9 7 2 11 11 C 1.38775 * 120.17934 * 354.39953 * 10 9 7 12 12 C 1.38052 * 120.10103 * 180.02562 * 11 10 9 13 13 C 1.38654 * 120.47281 * 359.97438 * 12 11 10 14 14 C 1.37720 * 120.35757 * 359.73568 * 13 12 11 15 15 C 1.39999 * 119.88907 * 0.53686 * 14 13 12 16 16 C 1.46765 * 120.22883 * 179.74437 * 15 14 13 17 17 C 1.35327 * 120.00141 * 359.72314 * 16 15 14 18 18 C 1.41744 * 119.99904 * 180.02562 * 17 16 15 19 19 O 1.21782 * 120.00365 * 0.02562 * 18 17 16 20 20 C 1.47819 * 119.99890 * 180.02562 * 18 17 16 21 21 C 1.39689 * 120.11714 * 359.97438 * 20 18 17 22 22 C 1.37817 * 119.90432 * 180.02562 * 21 20 18 23 23 C 1.38656 * 120.13491 * 359.73205 * 22 21 20 24 24 F 1.35108 * 119.88422 * 180.29406 * 23 22 21 25 25 C 1.38751 * 120.23090 * 0.54548 * 23 22 21 26 26 Cl 1.73602 * 119.95570 * 179.72362 * 25 23 22 27 27 C 1.37956 * 120.09308 * 359.45219 * 25 23 22 28 28 H 0.96996 * 120.00557 * 0.02562 * 1 2 3 29 29 H 1.08009 * 119.94936 * 0.02775 * 11 10 9 30 30 H 1.08006 * 119.76407 * 179.97438 * 12 11 10 31 31 H 1.07998 * 119.81838 * 180.02562 * 13 12 11 32 32 H 1.08004 * 120.05691 * 180.28310 * 14 13 12 33 33 H 1.07998 * 119.99852 * 179.72813 * 16 15 14 34 34 H 1.07998 * 120.00001 * 359.97438 * 17 16 15 35 35 H 1.08001 * 120.04224 * 0.04709 * 21 20 18 36 36 H 1.08005 * 119.93453 * 180.02562 * 22 21 20 37 37 H 1.08005 * 120.06777 * 180.29507 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3149 0.0000 0.0000 3 14 2.2488 1.6178 0.0000 4 1 3.7087 1.3466 0.0006 5 1 1.8900 2.3965 -1.2124 6 1 1.8899 2.3964 1.2125 7 6 2.0087 -1.2016 -0.0005 8 1 3.0887 -1.2015 -0.0001 9 8 1.3350 -2.3686 -0.0005 10 6 2.0690 -3.5026 0.1056 11 6 3.4552 -3.4403 0.0912 12 6 4.2014 -4.5967 0.1989 13 6 3.5761 -5.8281 0.3226 14 6 2.2016 -5.9116 0.3450 15 6 1.4301 -4.7489 0.2311 16 6 -0.0352 -4.8299 0.2484 17 6 -0.6451 -6.0319 0.3692 18 6 -2.0603 -6.1100 0.3853 19 8 -2.7274 -5.0956 0.2901 20 6 -2.7265 -7.4229 0.5178 21 6 -1.9638 -8.5881 0.6267 22 6 -2.5895 -9.8099 0.7495 23 6 -3.9739 -9.8840 0.7708 24 9 -4.5820 -11.0839 0.8973 25 6 -4.7370 -8.7308 0.6572 26 17 -6.4700 -8.8326 0.6774 27 6 -4.1206 -7.5028 0.5339 28 1 -0.4851 0.8400 -0.0004 29 1 3.9511 -2.4855 -0.0043 30 1 5.2800 -4.5420 0.1867 31 1 4.1702 -6.7260 0.4066 32 1 1.7197 -6.8728 0.4461 33 1 -0.6267 -3.9302 0.1646 34 1 -0.0536 -6.9316 0.4524 35 1 -0.8853 -8.5315 0.6150 36 1 -2.0003 -10.7111 0.8342 37 1 -4.7150 -6.6049 0.4504 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044027424.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:51:24 Heat of formation + Delta-G solvation = -60.527343 kcal Electronic energy + Delta-G solvation = -25350.450731 eV Core-core repulsion = 21191.862024 eV Total energy + Delta-G solvation = -4158.588707 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 346.056 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.14830 -41.29754 -40.80805 -39.33215 -38.26485 -37.64682 -35.08459 -34.38242 -32.38422 -32.17295 -30.79769 -30.30554 -27.43940 -26.33780 -24.40229 -24.01776 -23.16234 -21.94733 -20.19651 -19.75444 -19.27562 -18.77102 -17.90697 -17.75558 -16.93758 -16.68386 -16.59616 -16.24643 -15.85535 -15.74906 -15.61411 -15.56912 -15.25567 -15.05569 -14.58113 -14.33167 -14.19952 -14.05573 -14.03609 -13.60048 -13.22410 -13.18448 -12.66867 -12.60228 -12.52889 -12.42694 -12.17063 -12.11905 -11.94302 -11.29850 -11.24544 -10.90054 -10.87814 -10.20369 -9.90698 -9.43855 -8.82321 -8.53585 -6.20544 -0.89517 -0.21371 -0.07169 0.73228 0.82324 1.00312 1.33268 1.42253 1.51889 1.91951 2.12564 2.60528 2.83393 2.84381 2.99675 3.19429 3.38671 3.50781 3.83314 3.91065 3.95343 4.01609 4.22017 4.25589 4.40219 4.47691 4.57183 4.61886 4.66864 4.72501 4.90147 5.01750 5.04938 5.06878 5.20494 5.28803 5.40112 5.51538 5.67671 5.73086 5.74872 5.96178 6.19855 6.61544 6.90103 7.68161 8.68239 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.014776 B = 0.002299 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.501875 B =12175.972585 C =14055.069577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.020 4.020 3 Si 1.020 2.980 4 H -0.246 1.246 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.416 4.416 8 H 0.109 0.891 9 O -0.216 6.216 10 C 0.134 3.866 11 C -0.255 4.255 12 C -0.048 4.048 13 C -0.195 4.195 14 C -0.036 4.036 15 C -0.188 4.188 16 C 0.034 3.966 17 C -0.276 4.276 18 C 0.422 3.578 19 O -0.518 6.518 20 C -0.161 4.161 21 C -0.024 4.024 22 C -0.135 4.135 23 C 0.128 3.872 24 F -0.125 7.125 25 C -0.097 4.097 26 Cl -0.052 7.052 27 C -0.044 4.044 28 H 0.274 0.726 29 H 0.121 0.879 30 H 0.150 0.850 31 H 0.163 0.837 32 H 0.170 0.830 33 H 0.083 0.917 34 H 0.180 0.820 35 H 0.188 0.812 36 H 0.192 0.808 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.528 -22.144 1.935 22.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.219 4.219 3 Si 0.839 3.161 4 H -0.169 1.169 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.492 4.492 8 H 0.126 0.874 9 O -0.120 6.120 10 C 0.082 3.918 11 C -0.274 4.274 12 C -0.066 4.066 13 C -0.213 4.213 14 C -0.053 4.053 15 C -0.189 4.189 16 C 0.015 3.985 17 C -0.294 4.294 18 C 0.309 3.691 19 O -0.402 6.402 20 C -0.163 4.163 21 C -0.042 4.042 22 C -0.153 4.153 23 C 0.108 3.892 24 F -0.104 7.104 25 C -0.125 4.125 26 Cl -0.023 7.023 27 C -0.063 4.063 28 H 0.083 0.917 29 H 0.138 0.862 30 H 0.167 0.833 31 H 0.181 0.819 32 H 0.187 0.813 33 H 0.101 0.899 34 H 0.197 0.803 35 H 0.205 0.795 36 H 0.209 0.791 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.583 -21.509 1.873 21.598 hybrid contribution -0.725 1.470 -0.090 1.641 sum -0.143 -20.039 1.783 20.119 Atomic orbital electron populations 1.70177 1.08238 1.29025 1.47531 1.26664 0.96744 1.02963 0.95537 0.84515 0.78481 0.74659 0.78491 1.16924 1.19474 1.19506 1.21962 0.92740 0.81112 1.53344 0.87420 1.83854 1.36341 1.12758 1.79060 1.20282 0.91780 0.87473 0.92312 1.21300 0.92660 1.00817 1.12606 1.21455 1.00652 0.91485 0.92972 1.21236 0.94318 0.98262 1.07511 1.21531 0.93982 0.96441 0.93355 1.18466 0.92315 0.91803 1.16310 1.22388 0.93436 0.97821 0.84860 1.22321 0.94466 0.99175 1.13434 1.19550 0.90149 0.87473 0.71919 1.90720 1.69293 1.39331 1.40862 1.20506 0.93263 0.95726 1.06765 1.21819 1.02707 0.88860 0.90784 1.21535 0.90610 1.01188 1.01966 1.17912 0.91728 0.79174 1.00433 1.91559 1.83692 1.42400 1.92699 1.20922 0.86150 0.94305 1.11081 1.98391 1.08332 1.98526 1.97067 1.21124 0.94609 0.96297 0.94251 0.91700 0.86150 0.83274 0.81921 0.81279 0.89858 0.80330 0.79458 0.79050 0.84559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.06 13.67 21.63 0.30 -55.76 16 2 C -0.02 -1.13 5.50 84.87 0.47 -0.66 16 3 Si 1.02 41.98 29.55 68.60 2.03 44.01 16 4 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 6 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 7 C -0.42 -23.42 9.49 67.94 0.64 -22.78 16 8 H 0.11 5.48 5.21 -2.91 -0.02 5.46 16 9 O -0.22 -12.51 8.94 -19.08 -0.17 -12.68 16 10 C 0.13 6.26 6.67 22.98 0.15 6.41 16 11 C -0.25 -10.02 9.16 22.35 0.20 -9.82 16 12 C -0.05 -1.35 10.03 22.33 0.22 -1.13 16 13 C -0.20 -4.58 10.02 22.25 0.22 -4.36 16 14 C -0.04 -0.93 9.41 22.57 0.21 -0.72 16 15 C -0.19 -7.18 5.88 -20.04 -0.12 -7.30 16 16 C 0.03 1.36 9.17 23.83 0.22 1.57 16 17 C -0.28 -7.95 8.73 22.46 0.20 -7.75 16 18 C 0.42 13.41 6.91 25.67 0.18 13.59 16 19 O -0.52 -22.13 16.11 -4.61 -0.07 -22.20 16 20 C -0.16 -3.74 5.88 -20.05 -0.12 -3.86 16 21 C -0.02 -0.32 9.43 22.52 0.21 -0.11 16 22 C -0.13 -1.56 10.01 22.27 0.22 -1.33 16 23 C 0.13 2.24 7.28 22.49 0.16 2.40 16 24 F -0.13 -2.27 16.83 44.97 0.76 -1.52 16 25 C -0.10 -2.09 6.32 22.33 0.14 -1.95 16 26 Cl -0.05 -1.13 28.61 -2.72 -0.08 -1.21 16 27 C -0.04 -1.08 9.37 22.54 0.21 -0.87 16 28 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 29 H 0.12 4.87 5.64 -2.91 -0.02 4.86 16 30 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 31 H 0.16 2.35 8.06 -2.91 -0.02 2.32 16 32 H 0.17 2.66 6.17 -2.91 -0.02 2.64 16 33 H 0.08 4.24 7.04 -2.91 -0.02 4.22 16 34 H 0.18 3.01 4.25 -2.91 -0.01 3.00 16 35 H 0.19 1.12 6.20 -2.91 -0.02 1.10 16 36 H 0.19 0.73 8.06 -2.91 -0.02 0.71 16 37 H 0.14 3.75 7.65 -2.91 -0.02 3.73 16 Total: -1.00 -78.13 348.91 7.35 -70.78 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 1.16 Total: 17.25 kcal Atomic # 6 Polarization: -42.10 SS G_CDS: 3.44 Total: -38.66 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: 0.30 Total: -55.76 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -0.24 Total: -34.88 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.76 Total: -1.52 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.21 kcal Total: -78.13 7.35 -70.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044027424.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.249 kcal (2) G-P(sol) polarization free energy of solvation -78.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds