Wall clock time and date at job start Fri Apr 10 2020 14:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86796 * 120.00019 * 2 1 4 4 H 1.48493 * 109.47387 * 239.99922 * 3 2 1 5 5 H 1.48506 * 109.46942 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47021 * 119.99863 * 3 2 1 7 7 C 1.39891 * 120.00304 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00538 * 196.80705 * 7 2 1 9 9 C 1.41143 * 119.99564 * 16.80897 * 7 2 1 10 10 C 1.40875 * 120.16361 * 25.37716 * 9 7 2 11 11 C 1.36356 * 119.83097 * 180.27364 * 10 9 7 12 12 C 1.39512 * 120.16650 * 359.45494 * 11 10 9 13 13 N 1.39144 * 119.84213 * 180.27621 * 12 11 10 14 14 C 1.34780 * 119.99404 * 40.97566 * 13 12 11 15 15 S 1.71198 * 120.00289 * 5.74821 * 14 13 12 16 16 N 1.34780 * 119.99836 * 185.75158 * 14 13 12 17 17 C 1.46493 * 120.00157 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.47257 * 179.97438 * 17 16 14 19 19 C 1.38240 * 119.98659 * 269.72831 * 18 17 16 20 20 C 1.38210 * 120.01528 * 179.72481 * 19 18 17 21 21 C 1.38353 * 119.98484 * 0.54908 * 20 19 18 22 22 Cl 1.73599 * 120.01538 * 179.70613 * 21 20 19 23 23 C 1.38358 * 119.97106 * 359.72531 * 21 20 19 24 24 C 1.38210 * 119.98702 * 0.02562 * 23 21 20 25 25 C 1.39515 * 120.32634 * 0.25609 * 12 11 10 26 26 C 1.36356 * 120.16614 * 0.02562 * 25 12 11 27 27 H 0.96989 * 120.00473 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.08606 * 0.02562 * 10 9 7 29 29 H 1.07998 * 119.91924 * 179.73102 * 11 10 9 30 30 H 0.96992 * 120.00470 * 220.98220 * 13 12 11 31 31 H 0.97001 * 119.99360 * 359.97438 * 16 14 13 32 32 H 1.09000 * 109.47142 * 300.00015 * 17 16 14 33 33 H 1.09010 * 109.47006 * 59.99761 * 17 16 14 34 34 H 1.08004 * 119.99073 * 359.97438 * 19 18 17 35 35 H 1.08004 * 120.01350 * 180.27137 * 20 19 18 36 36 H 1.08001 * 120.00409 * 179.97438 * 23 21 20 37 37 H 1.08002 * 119.99094 * 179.97438 * 24 23 21 38 38 H 1.08004 * 119.91684 * 180.02562 * 25 12 11 39 39 H 1.08005 * 120.08526 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0966 1.6964 -1.2124 5 1 1.2778 2.7464 0.0006 6 1 3.0966 1.6964 1.2125 7 6 2.0084 -1.2114 0.0005 8 1 3.0537 -1.2313 0.2710 9 6 1.3479 -2.4078 -0.3524 10 6 0.2147 -2.3706 -1.1885 11 6 -0.4216 -3.5300 -1.5207 12 6 0.0538 -4.7520 -1.0440 13 7 -0.5973 -5.9315 -1.3918 14 6 -1.0464 -6.1072 -2.6504 15 16 -0.6884 -4.9467 -3.8570 16 7 -1.7776 -7.1966 -2.9590 17 6 -2.2663 -7.3874 -4.3268 18 6 -3.0496 -8.6724 -4.4057 19 6 -2.4073 -9.8548 -4.7226 20 6 -3.1241 -11.0345 -4.7896 21 6 -4.4868 -11.0302 -4.5505 22 17 -5.3893 -12.5103 -4.6418 23 6 -5.1301 -9.8455 -4.2388 24 6 -4.4112 -8.6673 -4.1671 25 6 1.1790 -4.7972 -0.2204 26 6 1.8222 -3.6455 0.1248 27 1 -0.4850 0.8399 0.0004 28 1 -0.1516 -1.4259 -1.5622 29 1 -1.2930 -3.5027 -2.1580 30 1 -0.7280 -6.6271 -0.7287 31 1 -1.9801 -7.8543 -2.2754 32 1 -2.9095 -6.5518 -4.6026 33 1 -1.4196 -7.4357 -5.0117 34 1 -1.3444 -9.8572 -4.9141 35 1 -2.6215 -11.9590 -5.0330 36 1 -6.1939 -9.8414 -4.0525 37 1 -4.9134 -7.7424 -3.9243 38 1 1.5416 -5.7469 0.1445 39 1 2.6935 -3.6821 0.7621 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225304733.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:51:59 Heat of formation + Delta-G solvation = 44.089035 kcal Electronic energy + Delta-G solvation = -23157.406407 eV Core-core repulsion = 19601.860134 eV Total energy + Delta-G solvation = -3555.546273 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 346.060 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.93743 -40.34966 -38.81353 -37.56435 -36.51921 -34.96770 -32.55162 -32.12256 -31.40852 -30.72435 -27.71370 -26.31630 -24.95266 -23.89554 -23.02515 -22.78383 -22.14642 -19.53594 -19.21683 -18.96282 -18.00363 -17.16575 -16.85806 -16.74929 -16.44582 -15.84491 -15.81129 -15.64926 -14.98418 -14.60270 -14.52290 -14.46007 -14.33538 -13.92105 -13.75690 -13.54524 -13.14075 -12.76511 -12.67434 -12.57705 -12.46739 -12.43898 -12.22834 -12.13097 -11.82689 -11.67504 -11.36760 -11.02473 -10.51170 -10.08583 -9.80105 -9.54160 -9.16573 -8.79223 -8.63163 -8.05579 -6.28051 -0.10880 0.21382 0.25360 0.96878 1.09098 1.13190 1.27444 1.40391 1.51696 1.56956 1.71360 2.22067 2.51845 2.76656 2.82325 3.49094 3.72019 3.79094 3.89325 4.15934 4.26801 4.42087 4.53909 4.57385 4.58067 4.71523 4.82920 4.94784 5.05825 5.11074 5.14886 5.18327 5.18724 5.37263 5.44553 5.46738 5.70931 5.73907 5.81274 6.01667 6.14302 6.22065 6.38568 6.59003 6.73040 6.94664 7.06636 8.32689 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.033943 B = 0.001768 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.721818 B =15831.570577 C =16039.176495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.033 3.967 3 Si 0.981 3.019 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.254 1.254 7 C -0.489 4.489 8 H 0.081 0.919 9 C 0.088 3.912 10 C -0.189 4.189 11 C -0.044 4.044 12 C -0.020 4.020 13 N -0.581 5.581 14 C 0.574 3.426 15 S -0.736 6.736 16 N -0.661 5.661 17 C 0.175 3.825 18 C -0.107 4.107 19 C -0.083 4.083 20 C -0.115 4.115 21 C -0.034 4.034 22 Cl -0.071 7.071 23 C -0.116 4.116 24 C -0.085 4.085 25 C -0.076 4.076 26 C -0.237 4.237 27 H 0.288 0.712 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.417 0.583 31 H 0.414 0.586 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.131 0.869 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.243 -22.550 -4.945 25.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.183 4.183 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.178 1.178 7 C -0.518 4.518 8 H 0.099 0.901 9 C 0.085 3.915 10 C -0.210 4.210 11 C -0.066 4.066 12 C -0.114 4.114 13 N -0.203 5.203 14 C 0.210 3.790 15 S -0.609 6.609 16 N -0.292 5.292 17 C 0.052 3.948 18 C -0.108 4.108 19 C -0.102 4.102 20 C -0.134 4.134 21 C -0.061 4.061 22 Cl -0.042 7.042 23 C -0.135 4.135 24 C -0.104 4.104 25 C -0.096 4.096 26 C -0.258 4.258 27 H 0.099 0.901 28 H 0.112 0.888 29 H 0.121 0.879 30 H 0.257 0.743 31 H 0.254 0.746 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.165 0.835 35 H 0.167 0.833 36 H 0.166 0.834 37 H 0.162 0.838 38 H 0.148 0.852 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.339 -21.764 -5.833 24.791 hybrid contribution -0.176 -0.278 0.986 1.040 sum -10.515 -22.042 -4.847 24.898 Atomic orbital electron populations 1.69898 1.09049 1.30700 1.34661 1.26806 0.95509 1.04675 0.91277 0.85259 0.78813 0.75621 0.80106 1.18834 1.19295 1.17839 1.19857 0.98144 0.92356 1.41406 0.90086 1.18050 0.91577 0.93462 0.88413 1.20746 1.00807 0.96628 1.02803 1.20514 0.98934 0.91555 0.95573 1.16815 0.99866 0.83518 1.11157 1.41590 1.52912 1.18285 1.07537 1.21705 0.82315 0.87554 0.87378 1.93646 1.78705 1.46712 1.41867 1.44790 1.50000 1.20399 1.13976 1.20431 0.98490 0.94979 0.80880 1.19853 0.94282 0.94137 1.02572 1.21271 1.01089 0.90751 0.97082 1.21272 0.91930 0.99904 1.00286 1.21216 0.93084 0.87987 1.03843 1.98389 1.74894 1.34255 1.96696 1.21262 1.01530 0.90577 1.00111 1.21265 0.93206 0.98614 0.97292 1.20312 0.92834 0.98143 0.98354 1.20711 1.04494 0.92549 1.08033 0.90090 0.88767 0.87886 0.74296 0.74630 0.89655 0.89407 0.83483 0.83255 0.83409 0.83760 0.85157 0.87365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.47 10.94 21.82 0.24 -43.23 16 2 C 0.03 1.69 5.15 85.23 0.44 2.13 16 3 Si 0.98 38.67 29.59 68.60 2.03 40.70 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 5 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 6 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 7 C -0.49 -26.39 9.04 23.38 0.21 -26.18 16 8 H 0.08 4.15 7.90 -2.91 -0.02 4.13 16 9 C 0.09 4.77 5.57 -21.27 -0.12 4.66 16 10 C -0.19 -10.43 8.63 22.48 0.19 -10.23 16 11 C -0.04 -2.18 7.76 22.14 0.17 -2.00 16 12 C -0.02 -0.82 5.94 38.60 0.23 -0.59 16 13 N -0.58 -17.42 5.29 -189.59 -1.00 -18.42 16 14 C 0.57 17.45 7.73 179.05 1.38 18.83 16 15 S -0.74 -31.66 24.96 -56.49 -1.41 -33.07 16 16 N -0.66 -12.69 5.55 -353.90 -1.97 -14.66 16 17 C 0.18 3.17 5.25 85.63 0.45 3.62 16 18 C -0.11 -1.40 5.25 -19.86 -0.10 -1.50 16 19 C -0.08 -0.94 9.70 22.26 0.22 -0.73 16 20 C -0.12 -1.28 9.83 22.29 0.22 -1.06 16 21 C -0.03 -0.43 6.32 22.33 0.14 -0.29 16 22 Cl -0.07 -0.91 28.96 -2.72 -0.08 -0.98 16 23 C -0.12 -1.35 9.83 22.29 0.22 -1.13 16 24 C -0.09 -1.02 9.70 22.26 0.22 -0.80 16 25 C -0.08 -3.08 9.90 22.14 0.22 -2.87 16 26 C -0.24 -11.22 9.74 22.48 0.22 -11.00 16 27 H 0.29 13.93 8.30 -92.72 -0.77 13.16 16 28 H 0.09 5.58 6.18 -2.91 -0.02 5.56 16 29 H 0.10 5.18 6.16 -6.32 -0.04 5.15 16 30 H 0.42 8.53 8.84 -92.71 -0.82 7.71 16 31 H 0.41 5.11 8.48 -92.71 -0.79 4.32 16 32 H 0.09 1.81 7.94 -2.39 -0.02 1.79 16 33 H 0.09 1.81 7.93 -2.38 -0.02 1.80 16 34 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 35 H 0.15 1.21 8.06 -2.91 -0.02 1.18 16 36 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 37 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 38 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 39 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -70.52 362.04 1.60 -68.92 By element: Atomic # 1 Polarization: 30.40 SS G_CDS: -0.51 Total: 29.89 kcal Atomic # 6 Polarization: -33.45 SS G_CDS: 4.31 Total: -29.15 kcal Atomic # 7 Polarization: -73.58 SS G_CDS: -2.73 Total: -76.31 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Atomic # 16 Polarization: -31.66 SS G_CDS: -1.41 Total: -33.07 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.98 kcal Total: -70.52 1.60 -68.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225304733.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.004 kcal (2) G-P(sol) polarization free energy of solvation -70.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds