Wall clock time and date at job start Fri Apr 10 2020 14:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86801 * 120.00039 * 2 1 4 4 H 1.48499 * 109.47439 * 240.00242 * 3 2 1 5 5 H 1.48505 * 109.46913 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47228 * 119.99778 * 3 2 1 7 7 C 1.39888 * 120.00283 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00202 * 196.90695 * 7 2 1 9 9 C 1.41144 * 119.99882 * 16.90651 * 7 2 1 10 10 C 1.40871 * 120.16105 * 205.25437 * 9 7 2 11 11 C 1.36360 * 119.82867 * 180.02562 * 10 9 7 12 12 C 1.39507 * 120.16652 * 359.97438 * 11 10 9 13 13 N 1.39144 * 119.83266 * 180.02562 * 12 11 10 14 14 C 1.34776 * 120.00051 * 139.28671 * 13 12 11 15 15 S 1.71206 * 119.99942 * 354.25179 * 14 13 12 16 16 N 1.34775 * 120.00369 * 174.25635 * 14 13 12 17 17 C 1.46500 * 120.00152 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.47179 * 179.97438 * 17 16 14 19 19 C 1.38242 * 120.00482 * 104.99416 * 18 17 16 20 20 C 1.38221 * 120.01186 * 179.74711 * 19 18 17 21 21 C 1.38261 * 120.02334 * 0.25639 * 20 19 18 22 22 C 1.38189 * 120.01827 * 0.02608 * 21 20 19 23 23 C 1.38327 * 120.00925 * 285.27819 * 18 17 16 24 24 Cl 1.73598 * 120.01395 * 0.02562 * 23 18 17 25 25 C 1.39504 * 120.33156 * 0.27286 * 12 11 10 26 26 C 1.36361 * 120.16286 * 359.44628 * 25 12 11 27 27 H 0.96997 * 120.00453 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.08704 * 0.02562 * 10 9 7 29 29 H 1.08008 * 119.91491 * 179.97438 * 11 10 9 30 30 H 0.96999 * 120.00452 * 319.28089 * 13 12 11 31 31 H 0.97003 * 119.99671 * 359.97438 * 16 14 13 32 32 H 1.08996 * 109.47547 * 59.99660 * 17 16 14 33 33 H 1.09000 * 109.46994 * 299.99611 * 17 16 14 34 34 H 1.08000 * 119.99037 * 0.02577 * 19 18 17 35 35 H 1.07997 * 119.98513 * 180.23387 * 20 19 18 36 36 H 1.08003 * 119.99049 * 179.97438 * 21 20 19 37 37 H 1.07998 * 120.00797 * 180.02562 * 22 21 20 38 38 H 1.07999 * 119.92335 * 179.70194 * 25 12 11 39 39 H 1.08000 * 120.08337 * 180.26947 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0966 1.6965 -1.2125 5 1 1.2778 2.7465 -0.0006 6 1 3.0965 1.6964 1.2125 7 6 2.0083 -1.2114 -0.0005 8 1 3.0533 -1.2318 0.2714 9 6 1.3484 -2.4072 -0.3566 10 6 1.8200 -3.6454 0.1220 11 6 1.1775 -4.7965 -0.2266 12 6 0.0557 -4.7501 -1.0545 13 7 -0.5949 -5.9289 -1.4055 14 6 -1.9415 -5.9706 -1.4411 15 16 -2.8540 -4.6212 -0.9140 16 7 -2.5700 -7.0745 -1.8917 17 6 -4.0338 -7.1195 -1.9309 18 6 -4.4810 -8.4532 -2.4714 19 6 -4.9975 -9.4080 -1.6154 20 6 -5.4126 -10.6294 -2.1118 21 6 -5.3067 -10.8989 -3.4637 22 6 -4.7851 -9.9475 -4.3195 23 6 -4.3694 -8.7245 -3.8232 24 17 -3.7135 -7.5290 -4.8976 25 6 -0.4141 -3.5281 -1.5365 26 6 0.2145 -2.3682 -1.1918 27 1 -0.4851 0.8400 -0.0004 28 1 2.6882 -3.6828 0.7633 29 1 1.5382 -5.7466 0.1391 30 1 -0.0793 -6.7208 -1.6246 31 1 -2.0530 -7.8389 -2.1906 32 1 -4.4046 -6.3234 -2.5765 33 1 -4.4285 -6.9843 -0.9240 34 1 -5.0808 -9.1978 -0.5594 35 1 -5.8196 -11.3736 -1.4433 36 1 -5.6308 -11.8536 -3.8509 37 1 -4.7028 -10.1580 -5.3756 38 1 -1.2804 -3.5003 -2.1809 39 1 -0.1529 -1.4226 -1.5621 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225371211.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:52:02 Heat of formation + Delta-G solvation = 62.521873 kcal Electronic energy + Delta-G solvation = -23630.760358 eV Core-core repulsion = 20076.013392 eV Total energy + Delta-G solvation = -3554.746965 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 346.060 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.06832 -38.94697 -37.22554 -36.75606 -35.15665 -33.29221 -31.82457 -31.14863 -29.50524 -29.01110 -26.62308 -24.73259 -23.46739 -23.13731 -22.01740 -21.14080 -20.52136 -18.19988 -17.63697 -17.30950 -17.00129 -16.19944 -15.65700 -15.45866 -15.08499 -14.78370 -14.43607 -14.25478 -13.94644 -13.78020 -13.37124 -13.31374 -12.71769 -12.27526 -12.07607 -11.96918 -11.88440 -11.83975 -11.71779 -11.24475 -11.08179 -11.06115 -10.85820 -10.53896 -10.43278 -9.86909 -9.63912 -9.47057 -9.31369 -9.16052 -8.82745 -7.65576 -7.35001 -6.98249 -6.76439 -6.22836 -4.30457 0.60412 0.75347 1.77115 1.79011 2.50708 2.85620 2.98770 3.09170 3.11101 3.17411 3.27151 3.36322 3.93826 4.04089 4.16487 4.31487 4.50788 4.65179 4.78852 4.86798 5.10928 5.30753 5.41267 5.66015 5.72639 5.73781 5.90752 5.96803 6.10278 6.26637 6.31223 6.39887 6.59888 7.01395 7.06194 7.14226 7.24974 7.33291 7.63419 7.70066 7.97285 8.08149 8.23288 8.30395 8.66543 8.88959 8.99805 10.18801 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.025450 B = 0.002232 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.946850 B =12544.367582 C =12714.732053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.453 4.453 8 H 0.079 0.921 9 C 0.119 3.881 10 C -0.227 4.227 11 C -0.081 4.081 12 C -0.037 4.037 13 N -0.591 5.591 14 C 0.544 3.456 15 S -0.634 6.634 16 N -0.693 5.693 17 C 0.172 3.828 18 C -0.101 4.101 19 C -0.086 4.086 20 C -0.118 4.118 21 C -0.102 4.102 22 C -0.114 4.114 23 C -0.024 4.024 24 Cl -0.055 7.055 25 C -0.038 4.038 26 C -0.164 4.164 27 H 0.284 0.716 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.389 0.611 31 H 0.390 0.610 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.137 0.863 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.111 0.889 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.746 -20.799 -7.758 23.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.147 4.147 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.482 4.482 8 H 0.097 0.903 9 C 0.116 3.884 10 C -0.247 4.247 11 C -0.102 4.102 12 C -0.130 4.130 13 N -0.210 5.210 14 C 0.186 3.814 15 S -0.506 6.506 16 N -0.326 5.326 17 C 0.048 3.952 18 C -0.103 4.103 19 C -0.105 4.105 20 C -0.136 4.136 21 C -0.120 4.120 22 C -0.133 4.133 23 C -0.051 4.051 24 Cl -0.026 7.026 25 C -0.060 4.060 26 C -0.185 4.185 27 H 0.095 0.905 28 H 0.113 0.887 29 H 0.104 0.896 30 H 0.224 0.776 31 H 0.225 0.775 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.155 0.845 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.129 0.871 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.613 -19.525 -7.460 23.006 hybrid contribution 1.219 -0.713 -0.468 1.488 sum -8.394 -20.238 -7.928 23.300 Atomic orbital electron populations 1.69877 1.07488 1.29617 1.32820 1.25983 0.94771 1.01425 0.92494 0.86356 0.80138 0.80238 0.79951 1.18783 1.20246 1.18985 1.19580 0.97777 0.91263 1.39541 0.90328 1.17712 0.90871 0.91930 0.87850 1.20462 1.04311 0.92416 1.07520 1.19981 0.96119 0.97085 0.96995 1.16889 1.00319 0.83681 1.12062 1.41971 1.02325 1.13948 1.62766 1.22371 0.86007 0.89983 0.83085 1.93419 1.62779 1.28015 1.66381 1.44724 1.07475 1.15115 1.65255 1.20388 0.78158 0.93121 1.03534 1.19927 1.01639 0.96917 0.91768 1.21178 0.96872 0.92433 0.99985 1.21295 0.99525 0.97113 0.95671 1.21200 0.98249 0.99146 0.93424 1.21107 0.99342 0.91965 1.00867 1.21005 1.01187 0.91904 0.91018 1.98425 1.84047 1.55936 1.64154 1.20514 0.96562 0.91095 0.97779 1.20876 0.99203 0.96664 1.01769 0.90510 0.88663 0.89579 0.77559 0.77465 0.88411 0.88685 0.84537 0.85085 0.84972 0.84765 0.87129 0.86199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.56 10.94 55.54 0.61 -19.95 16 2 C 0.07 1.85 5.15 -17.34 -0.09 1.76 16 3 Si 0.91 18.68 29.59 -169.99 -5.03 13.65 16 4 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.45 -11.93 9.04 -37.86 -0.34 -12.27 16 8 H 0.08 1.96 7.90 -52.49 -0.41 1.55 16 9 C 0.12 3.19 5.57 -106.80 -0.59 2.59 16 10 C -0.23 -5.48 9.74 -39.26 -0.38 -5.86 16 11 C -0.08 -1.77 9.90 -39.79 -0.39 -2.17 16 12 C -0.04 -0.81 5.94 -83.60 -0.50 -1.30 16 13 N -0.59 -10.19 5.29 -11.28 -0.06 -10.25 16 14 C 0.54 9.42 7.73 -86.92 -0.67 8.75 16 15 S -0.63 -14.34 24.96 -107.50 -2.68 -17.03 16 16 N -0.69 -8.67 5.43 -63.21 -0.34 -9.02 16 17 C 0.17 2.01 4.59 -5.19 -0.02 1.98 16 18 C -0.10 -0.92 5.25 -104.59 -0.55 -1.47 16 19 C -0.09 -0.64 9.67 -39.59 -0.38 -1.02 16 20 C -0.12 -0.71 10.05 -39.58 -0.40 -1.11 16 21 C -0.10 -0.60 10.04 -39.59 -0.40 -1.00 16 22 C -0.11 -0.82 9.83 -39.55 -0.39 -1.21 16 23 C -0.02 -0.22 6.31 -39.50 -0.25 -0.47 16 24 Cl -0.05 -0.58 27.54 -51.86 -1.43 -2.00 16 25 C -0.04 -0.94 7.76 -39.79 -0.31 -1.25 16 26 C -0.16 -4.40 8.63 -39.26 -0.34 -4.74 16 27 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 28 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 29 H 0.09 1.60 8.06 -52.48 -0.42 1.18 16 30 H 0.39 5.16 8.84 -40.82 -0.36 4.79 16 31 H 0.39 3.89 8.49 -40.82 -0.35 3.54 16 32 H 0.10 1.33 7.45 -51.93 -0.39 0.94 16 33 H 0.10 1.17 7.80 -51.93 -0.41 0.76 16 34 H 0.14 0.86 8.00 -52.49 -0.42 0.44 16 35 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 36 H 0.13 0.46 8.06 -52.48 -0.42 0.04 16 37 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.11 2.77 6.16 -47.15 -0.29 2.48 16 39 H 0.12 3.35 6.17 -52.49 -0.32 3.03 16 LS Contribution 359.68 15.07 5.42 5.42 Total: -1.00 -31.85 359.68 -13.72 -45.57 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -4.20 Total: 12.39 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -6.01 Total: -18.78 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.20 Total: -39.22 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Atomic # 16 Polarization: -14.34 SS G_CDS: -2.68 Total: -17.03 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.43 Total: -2.00 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.85 -13.72 -45.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225371211.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.090 kcal (2) G-P(sol) polarization free energy of solvation -31.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds