Wall clock time and date at job start Fri Apr 10 2020 14:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86801 * 120.00039 * 2 1 4 4 H 1.48499 * 109.47439 * 240.00242 * 3 2 1 5 5 H 1.48505 * 109.46913 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47228 * 119.99778 * 3 2 1 7 7 C 1.39888 * 120.00283 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00202 * 196.90695 * 7 2 1 9 9 C 1.41144 * 119.99882 * 16.90651 * 7 2 1 10 10 C 1.40871 * 120.16105 * 205.25437 * 9 7 2 11 11 C 1.36360 * 119.82867 * 180.02562 * 10 9 7 12 12 C 1.39507 * 120.16652 * 359.97438 * 11 10 9 13 13 N 1.39144 * 119.83266 * 180.02562 * 12 11 10 14 14 C 1.34776 * 120.00051 * 139.28671 * 13 12 11 15 15 S 1.71206 * 119.99942 * 354.25179 * 14 13 12 16 16 N 1.34775 * 120.00369 * 174.25635 * 14 13 12 17 17 C 1.46500 * 120.00152 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.47179 * 179.97438 * 17 16 14 19 19 C 1.38242 * 120.00482 * 104.99416 * 18 17 16 20 20 C 1.38221 * 120.01186 * 179.74711 * 19 18 17 21 21 C 1.38261 * 120.02334 * 0.25639 * 20 19 18 22 22 C 1.38189 * 120.01827 * 0.02608 * 21 20 19 23 23 C 1.38327 * 120.00925 * 285.27819 * 18 17 16 24 24 Cl 1.73598 * 120.01395 * 0.02562 * 23 18 17 25 25 C 1.39504 * 120.33156 * 0.27286 * 12 11 10 26 26 C 1.36361 * 120.16286 * 359.44628 * 25 12 11 27 27 H 0.96997 * 120.00453 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.08704 * 0.02562 * 10 9 7 29 29 H 1.08008 * 119.91491 * 179.97438 * 11 10 9 30 30 H 0.96999 * 120.00452 * 319.28089 * 13 12 11 31 31 H 0.97003 * 119.99671 * 359.97438 * 16 14 13 32 32 H 1.08996 * 109.47547 * 59.99660 * 17 16 14 33 33 H 1.09000 * 109.46994 * 299.99611 * 17 16 14 34 34 H 1.08000 * 119.99037 * 0.02577 * 19 18 17 35 35 H 1.07997 * 119.98513 * 180.23387 * 20 19 18 36 36 H 1.08003 * 119.99049 * 179.97438 * 21 20 19 37 37 H 1.07998 * 120.00797 * 180.02562 * 22 21 20 38 38 H 1.07999 * 119.92335 * 179.70194 * 25 12 11 39 39 H 1.08000 * 120.08337 * 180.26947 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0966 1.6965 -1.2125 5 1 1.2778 2.7465 -0.0006 6 1 3.0965 1.6964 1.2125 7 6 2.0083 -1.2114 -0.0005 8 1 3.0533 -1.2318 0.2714 9 6 1.3484 -2.4072 -0.3566 10 6 1.8200 -3.6454 0.1220 11 6 1.1775 -4.7965 -0.2266 12 6 0.0557 -4.7501 -1.0545 13 7 -0.5949 -5.9289 -1.4055 14 6 -1.9415 -5.9706 -1.4411 15 16 -2.8540 -4.6212 -0.9140 16 7 -2.5700 -7.0745 -1.8917 17 6 -4.0338 -7.1195 -1.9309 18 6 -4.4810 -8.4532 -2.4714 19 6 -4.9975 -9.4080 -1.6154 20 6 -5.4126 -10.6294 -2.1118 21 6 -5.3067 -10.8989 -3.4637 22 6 -4.7851 -9.9475 -4.3195 23 6 -4.3694 -8.7245 -3.8232 24 17 -3.7135 -7.5290 -4.8976 25 6 -0.4141 -3.5281 -1.5365 26 6 0.2145 -2.3682 -1.1918 27 1 -0.4851 0.8400 -0.0004 28 1 2.6882 -3.6828 0.7633 29 1 1.5382 -5.7466 0.1391 30 1 -0.0793 -6.7208 -1.6246 31 1 -2.0530 -7.8389 -2.1906 32 1 -4.4046 -6.3234 -2.5765 33 1 -4.4285 -6.9843 -0.9240 34 1 -5.0808 -9.1978 -0.5594 35 1 -5.8196 -11.3736 -1.4433 36 1 -5.6308 -11.8536 -3.8509 37 1 -4.7028 -10.1580 -5.3756 38 1 -1.2804 -3.5003 -2.1809 39 1 -0.1529 -1.4226 -1.5621 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225371211.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:52:01 Heat of formation + Delta-G solvation = 45.693941 kcal Electronic energy + Delta-G solvation = -23631.490071 eV Core-core repulsion = 20076.013392 eV Total energy + Delta-G solvation = -3555.476679 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 346.060 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.96028 -40.34662 -38.78145 -37.48206 -36.64137 -35.01120 -32.78090 -31.72947 -31.41584 -30.75354 -27.79974 -26.36163 -24.98199 -23.73459 -23.04125 -22.80718 -22.17393 -19.56769 -19.21548 -18.98623 -17.86577 -17.16503 -16.94114 -16.76437 -16.46052 -15.91809 -15.78135 -15.66882 -14.95625 -14.81637 -14.54922 -14.45058 -14.01479 -13.93539 -13.78947 -13.54968 -13.02133 -12.75909 -12.65116 -12.59584 -12.54633 -12.33130 -12.30425 -12.12872 -11.77080 -11.67043 -11.45594 -11.10575 -10.43001 -10.05606 -9.77264 -9.54230 -9.13368 -8.80399 -8.63763 -8.06557 -6.27625 -0.02586 0.18990 0.22401 0.97032 1.09991 1.12420 1.26541 1.39665 1.52393 1.56427 1.71740 2.21850 2.55841 2.76431 2.79745 3.40543 3.70538 3.78152 4.03380 4.24852 4.34047 4.40767 4.45800 4.53197 4.56104 4.70709 4.81044 4.90257 5.04575 5.14065 5.16645 5.21462 5.33615 5.36759 5.41677 5.45825 5.73976 5.78560 5.79363 6.00349 6.13913 6.20194 6.38091 6.57885 6.72639 6.94375 7.06671 8.33768 Molecular weight = 346.06amu Principal moments of inertia in cm(-1) A = 0.025450 B = 0.002232 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.946850 B =12544.367582 C =12714.732053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.029 3.971 3 Si 0.985 3.015 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.255 1.255 7 C -0.488 4.488 8 H 0.084 0.916 9 C 0.089 3.911 10 C -0.237 4.237 11 C -0.075 4.075 12 C -0.020 4.020 13 N -0.582 5.582 14 C 0.575 3.425 15 S -0.735 6.735 16 N -0.658 5.658 17 C 0.175 3.825 18 C -0.113 4.113 19 C -0.088 4.088 20 C -0.113 4.113 21 C -0.092 4.092 22 C -0.118 4.118 23 C -0.036 4.036 24 Cl -0.078 7.078 25 C -0.044 4.044 26 C -0.190 4.190 27 H 0.287 0.713 28 H 0.110 0.890 29 H 0.131 0.869 30 H 0.417 0.583 31 H 0.411 0.589 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.146 0.854 35 H 0.159 0.841 36 H 0.163 0.837 37 H 0.147 0.853 38 H 0.100 0.900 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.426 -24.654 -7.867 27.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.186 4.186 3 Si 0.805 3.195 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.517 4.517 8 H 0.102 0.898 9 C 0.086 3.914 10 C -0.258 4.258 11 C -0.095 4.095 12 C -0.114 4.114 13 N -0.204 5.204 14 C 0.212 3.788 15 S -0.608 6.608 16 N -0.288 5.288 17 C 0.052 3.948 18 C -0.115 4.115 19 C -0.107 4.107 20 C -0.130 4.130 21 C -0.110 4.110 22 C -0.137 4.137 23 C -0.063 4.063 24 Cl -0.049 7.049 25 C -0.066 4.066 26 C -0.211 4.211 27 H 0.098 0.902 28 H 0.128 0.872 29 H 0.148 0.852 30 H 0.257 0.743 31 H 0.250 0.750 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.164 0.836 35 H 0.177 0.823 36 H 0.181 0.819 37 H 0.165 0.835 38 H 0.118 0.882 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.293 -23.481 -7.598 26.371 hybrid contribution 0.952 0.096 -0.508 1.083 sum -8.341 -23.385 -8.106 26.118 Atomic orbital electron populations 1.69976 1.09282 1.30662 1.34414 1.26908 0.95405 1.04984 0.91346 0.85212 0.78656 0.75318 0.80289 1.18164 1.19689 1.17923 1.19868 0.98241 0.92248 1.41293 0.89758 1.18048 0.91316 0.93505 0.88534 1.20718 1.05009 0.92350 1.07707 1.20319 0.95224 0.98249 0.95743 1.16820 0.99940 0.84152 1.10448 1.41596 1.02197 1.13697 1.62879 1.21688 0.85564 0.89482 0.82025 1.93731 1.64693 1.31911 1.70455 1.44693 1.08355 1.13902 1.61898 1.20364 0.76856 0.94599 1.03009 1.19665 1.03685 0.95996 0.92150 1.21359 0.96427 0.92633 1.00296 1.21649 0.98283 0.96824 0.96280 1.21603 0.96469 0.99797 0.93170 1.21350 0.98991 0.91368 1.01952 1.21117 1.02328 0.92247 0.90584 1.98419 1.84498 1.57072 1.64905 1.20509 0.96039 0.92018 0.98001 1.20756 1.00506 0.96446 1.03387 0.90225 0.87232 0.85164 0.74337 0.75017 0.90438 0.89145 0.83612 0.82305 0.81949 0.83486 0.88186 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.90 10.94 21.82 0.24 -45.66 16 2 C 0.03 1.53 5.15 85.23 0.44 1.97 16 3 Si 0.99 39.31 29.59 68.60 2.03 41.34 16 4 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 5 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 6 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 7 C -0.49 -26.62 9.04 23.38 0.21 -26.41 16 8 H 0.08 4.31 7.90 -2.91 -0.02 4.29 16 9 C 0.09 4.91 5.57 -21.27 -0.12 4.79 16 10 C -0.24 -11.43 9.74 22.48 0.22 -11.21 16 11 C -0.08 -3.13 9.90 22.14 0.22 -2.91 16 12 C -0.02 -0.86 5.94 38.59 0.23 -0.63 16 13 N -0.58 -18.83 5.29 -189.60 -1.00 -19.83 16 14 C 0.58 19.41 7.73 179.06 1.38 20.79 16 15 S -0.73 -34.37 24.96 -56.49 -1.41 -35.78 16 16 N -0.66 -15.37 5.43 -353.91 -1.92 -17.30 16 17 C 0.17 3.98 4.59 85.63 0.39 4.37 16 18 C -0.11 -1.87 5.25 -19.84 -0.10 -1.98 16 19 C -0.09 -1.06 9.67 22.27 0.22 -0.85 16 20 C -0.11 -0.89 10.05 22.27 0.22 -0.66 16 21 C -0.09 -0.69 10.04 22.26 0.22 -0.47 16 22 C -0.12 -1.35 9.83 22.29 0.22 -1.13 16 23 C -0.04 -0.58 6.31 22.32 0.14 -0.44 16 24 Cl -0.08 -1.59 27.54 -2.72 -0.07 -1.66 16 25 C -0.04 -2.25 7.76 22.14 0.17 -2.07 16 26 C -0.19 -10.74 8.63 22.48 0.19 -10.55 16 27 H 0.29 14.77 8.30 -92.71 -0.77 14.00 16 28 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 29 H 0.13 4.28 8.06 -2.91 -0.02 4.25 16 30 H 0.42 9.43 8.84 -92.71 -0.82 8.61 16 31 H 0.41 6.94 8.49 -92.71 -0.79 6.16 16 32 H 0.08 2.16 7.45 -2.39 -0.02 2.14 16 33 H 0.09 2.21 7.80 -2.39 -0.02 2.19 16 34 H 0.15 1.44 8.00 -2.91 -0.02 1.42 16 35 H 0.16 0.41 8.06 -2.91 -0.02 0.38 16 36 H 0.16 0.27 8.06 -2.91 -0.02 0.24 16 37 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 38 H 0.10 5.28 6.16 -6.31 -0.04 5.24 16 39 H 0.09 5.69 6.17 -2.91 -0.02 5.67 16 Total: -1.00 -75.19 359.68 1.61 -73.58 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: -0.51 Total: 32.69 kcal Atomic # 6 Polarization: -31.64 SS G_CDS: 4.26 Total: -27.38 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -2.69 Total: -82.79 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.34 kcal Atomic # 16 Polarization: -34.37 SS G_CDS: -1.41 Total: -35.78 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -0.07 Total: -1.66 kcal Total: -75.19 1.61 -73.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225371211.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.276 kcal (2) G-P(sol) polarization free energy of solvation -75.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds