Wall clock time and date at job start Fri Apr 10 2020 14:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30587 * 1 3 3 Si 1.86791 * 120.00335 * 2 1 4 4 H 1.48496 * 109.47368 * 239.99684 * 3 2 1 5 5 H 1.48498 * 109.47088 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47557 * 119.99571 * 3 2 1 7 7 C 1.40229 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99590 * 180.02562 * 7 2 1 9 9 C 1.40891 * 119.99988 * 0.02562 * 7 2 1 10 10 O 1.21946 * 120.00378 * 0.02562 * 9 7 2 11 11 N 1.34774 * 119.99952 * 180.02562 * 9 7 2 12 12 N 1.39338 * 125.53305 * 359.97432 * 11 9 7 13 13 C 1.29639 * 113.95473 * 180.02562 * 12 11 9 14 14 C 1.46915 * 125.29510 * 179.97438 * 13 12 11 15 15 C 1.40113 * 120.15427 * 179.74825 * 14 13 12 16 16 C 1.37711 * 119.83681 * 179.76842 * 15 14 13 17 17 C 1.38790 * 120.15827 * 0.48270 * 16 15 14 18 18 F 1.35098 * 119.84233 * 179.76341 * 17 16 15 19 19 C 1.38789 * 120.31976 * 359.79375 * 17 16 15 20 20 C 1.37713 * 120.15767 * 359.94658 * 19 17 16 21 21 C 1.51194 * 109.40958 * 0.02562 * 13 12 11 22 22 C 1.47121 * 125.53449 * 180.02562 * 11 9 7 23 23 O 1.42902 * 110.57669 * 61.41896 * 22 11 9 24 24 C 1.53003 * 110.57744 * 298.53430 * 22 11 9 25 25 F 1.39907 * 109.46875 * 305.71677 * 24 22 11 26 26 F 1.39901 * 109.47066 * 65.71123 * 24 22 11 27 27 F 1.39901 * 109.47095 * 185.71529 * 24 22 11 28 28 H 0.97003 * 119.99916 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.08320 * 0.02562 * 15 14 13 30 30 H 1.07999 * 119.92328 * 180.27731 * 16 15 14 31 31 H 1.07999 * 119.92362 * 179.97438 * 19 17 16 32 32 H 1.07994 * 120.07908 * 180.02562 * 20 19 17 33 33 H 1.08998 * 110.52467 * 241.37559 * 21 13 12 34 34 H 1.08995 * 110.52499 * 118.62724 * 21 13 12 35 35 H 0.96693 * 114.00317 * 294.28335 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3059 0.0000 0.0000 3 14 2.2399 1.6176 0.0000 4 1 3.0937 1.6962 -1.2124 5 1 1.2750 2.7464 -0.0006 6 1 3.0936 1.6964 1.2125 7 6 2.0069 -1.2145 0.0005 8 1 3.0869 -1.2144 0.0010 9 6 1.3024 -2.4346 0.0005 10 8 0.0830 -2.4346 -0.0004 11 7 1.9763 -3.6018 0.0016 12 7 3.3631 -3.7362 0.0022 13 6 3.7727 -4.9662 0.0027 14 6 5.1786 -5.3927 0.0028 15 6 5.5004 -6.7563 0.0087 16 6 6.8204 -7.1488 0.0039 17 6 7.8308 -6.1973 0.0036 18 9 9.1236 -6.5895 0.0038 19 6 7.5195 -4.8448 0.0036 20 6 6.2039 -4.4376 0.0029 21 6 2.5785 -5.8934 0.0017 22 6 1.3669 -4.9409 0.0012 23 8 0.5777 -5.1332 -1.1745 24 6 0.5199 -5.1467 1.2587 25 9 1.2982 -4.8892 2.3924 26 9 -0.5716 -4.2719 1.2340 27 9 0.0588 -6.4669 1.2995 28 1 -0.4850 0.8401 -0.0004 29 1 4.7152 -7.4978 0.0126 30 1 7.0701 -8.1996 0.0039 31 1 8.3108 -4.1098 0.0037 32 1 5.9631 -3.3849 0.0025 33 1 2.5759 -6.5140 0.8978 34 1 2.5774 -6.5142 -0.8942 35 1 -0.1981 -4.5584 -1.2258 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408563925.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:51:46 Heat of formation + Delta-G solvation = -197.793279 kcal Electronic energy + Delta-G solvation = -31085.849617 eV Core-core repulsion = 25971.035459 eV Total energy + Delta-G solvation = -5114.814158 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.073 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.70331 -48.98735 -47.29114 -47.05749 -40.23483 -38.77602 -36.69489 -35.88786 -32.93104 -32.15371 -31.40386 -30.31039 -29.29449 -27.00962 -25.79526 -23.66436 -22.99034 -22.01956 -20.39880 -19.99149 -18.60236 -18.07307 -17.83828 -17.74037 -17.24048 -16.71207 -16.17721 -15.68096 -15.66914 -14.77673 -14.72178 -14.42384 -14.13883 -14.09008 -14.07932 -13.69562 -13.68898 -13.61548 -13.49107 -13.30211 -13.20034 -13.15341 -12.90156 -12.83868 -12.43351 -12.26467 -11.98454 -11.44449 -11.33745 -11.16082 -10.91882 -10.89367 -10.65137 -10.48285 -9.75141 -9.24794 -9.18411 -8.96315 -8.15600 -7.62329 -6.57961 -5.07995 0.67725 1.16464 2.38646 2.74465 3.01452 3.06342 3.08226 3.24462 3.63820 3.72618 3.90078 3.92699 4.10331 4.14225 4.31779 4.39983 4.43690 4.72511 4.75232 4.84339 5.02435 5.14799 5.31154 5.42873 5.54631 5.59975 5.72163 5.81835 5.96792 6.05271 6.32467 6.36154 6.75499 7.11397 7.43768 7.65313 7.77126 8.00987 8.63978 8.97217 10.06752 10.30717 Molecular weight = 346.07amu Principal moments of inertia in cm(-1) A = 0.009982 B = 0.004480 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.259199 B = 6248.445735 C = 8536.357165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.083 3.917 3 Si 0.920 3.080 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.500 4.500 8 H 0.084 0.916 9 C 0.555 3.445 10 O -0.553 6.553 11 N -0.463 5.463 12 N -0.163 5.163 13 C 0.057 3.943 14 C -0.010 4.010 15 C -0.075 4.075 16 C -0.152 4.152 17 C 0.095 3.905 18 F -0.143 7.143 19 C -0.151 4.151 20 C -0.060 4.060 21 C -0.104 4.104 22 C 0.277 3.723 23 O -0.534 6.534 24 C 0.424 3.576 25 F -0.177 7.177 26 F -0.147 7.147 27 F -0.184 7.184 28 H 0.277 0.723 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.146 0.854 33 H 0.107 0.893 34 H 0.120 0.880 35 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.956 -11.414 0.342 15.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.142 4.142 3 Si 0.744 3.256 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.535 4.535 8 H 0.103 0.897 9 C 0.371 3.629 10 O -0.433 6.433 11 N -0.297 5.297 12 N 0.025 4.975 13 C -0.132 4.132 14 C -0.012 4.012 15 C -0.095 4.095 16 C -0.171 4.171 17 C 0.075 3.925 18 F -0.121 7.121 19 C -0.169 4.169 20 C -0.081 4.081 21 C -0.144 4.144 22 C 0.147 3.853 23 O -0.339 6.339 24 C 0.367 3.633 25 F -0.158 7.158 26 F -0.128 7.128 27 F -0.166 7.166 28 H 0.088 0.912 29 H 0.155 0.845 30 H 0.155 0.845 31 H 0.156 0.844 32 H 0.164 0.836 33 H 0.126 0.874 34 H 0.139 0.861 35 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 9.446 -10.550 0.203 14.162 hybrid contribution -0.399 0.247 0.369 0.597 sum 9.047 -10.303 0.572 13.724 Atomic orbital electron populations 1.69966 1.07453 1.28619 1.30609 1.25920 0.94773 1.01108 0.92384 0.86198 0.79833 0.79553 0.80053 1.18748 1.20232 1.18738 1.19976 0.95405 0.88719 1.49355 0.89743 1.16944 0.86823 0.80110 0.79028 1.90806 1.12267 1.83028 1.57159 1.51860 0.99307 1.04812 1.73743 1.74858 0.97094 1.19832 1.05721 1.22745 0.93016 0.90558 1.06885 1.17838 0.88518 0.93034 1.01817 1.21082 0.95863 0.94622 0.97965 1.20967 0.92002 0.99623 1.04482 1.17950 0.78200 0.93224 1.03158 1.91487 1.35026 1.91703 1.93903 1.21085 0.97812 0.94075 1.03969 1.21331 0.90556 1.00737 0.95438 1.21806 0.88659 0.97775 1.06145 1.22765 0.89989 0.89007 0.83532 1.86519 1.43071 1.65084 1.39274 1.21424 0.80989 0.74149 0.86756 1.93175 1.74808 1.93859 1.54002 1.93381 1.55010 1.68074 1.96372 1.93153 1.89798 1.36823 1.96828 0.91187 0.84498 0.84505 0.84426 0.83587 0.87438 0.86149 0.74535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.45 11.71 55.56 0.65 -19.80 16 2 C 0.08 2.15 5.50 -17.33 -0.10 2.05 16 3 Si 0.92 19.02 29.56 -169.99 -5.02 13.99 16 4 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 7 C -0.50 -13.54 9.01 -37.83 -0.34 -13.89 16 8 H 0.08 2.17 7.40 -52.49 -0.39 1.78 16 9 C 0.55 15.11 7.35 -15.26 -0.11 14.99 16 10 O -0.55 -16.16 11.49 4.97 0.06 -16.10 16 11 N -0.46 -10.65 3.45 -54.08 -0.19 -10.83 16 12 N -0.16 -3.30 10.74 35.09 0.38 -2.93 16 13 C 0.06 0.92 7.18 -79.76 -0.57 0.35 16 14 C -0.01 -0.13 5.88 -104.98 -0.62 -0.74 16 15 C -0.07 -0.75 9.60 -39.07 -0.38 -1.13 16 16 C -0.15 -1.43 10.01 -39.57 -0.40 -1.83 16 17 C 0.09 1.01 7.31 -39.17 -0.29 0.73 16 18 F -0.14 -1.58 17.26 2.25 0.04 -1.54 16 19 C -0.15 -1.61 10.01 -39.57 -0.40 -2.01 16 20 C -0.06 -0.75 9.68 -39.07 -0.38 -1.12 16 21 C -0.10 -1.57 5.14 -27.05 -0.14 -1.70 16 22 C 0.28 5.41 0.98 -67.00 -0.07 5.34 16 23 O -0.53 -10.31 13.18 -35.23 -0.46 -10.78 16 24 C 0.42 8.41 2.36 37.16 0.09 8.50 16 25 F -0.18 -3.56 16.80 2.25 0.04 -3.53 16 26 F -0.15 -3.40 13.88 2.25 0.03 -3.37 16 27 F -0.18 -3.17 16.93 2.25 0.04 -3.13 16 28 H 0.28 6.92 8.29 -40.82 -0.34 6.58 16 29 H 0.14 1.06 7.47 -52.49 -0.39 0.66 16 30 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 31 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.15 1.87 7.81 -52.49 -0.41 1.46 16 33 H 0.11 1.37 7.44 -51.93 -0.39 0.98 16 34 H 0.12 1.54 8.00 -51.93 -0.42 1.13 16 35 H 0.40 7.91 7.68 45.56 0.35 8.26 16 LS Contribution 326.53 15.07 4.92 4.92 Total: -1.00 -31.49 326.53 -4.83 -36.32 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -1.62 Total: 7.23 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: -3.69 Total: 9.54 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: 0.84 Total: -33.56 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.41 Total: -26.88 kcal Atomic # 9 Polarization: -11.71 SS G_CDS: 0.15 Total: -11.57 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.49 -4.83 -36.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408563925.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.470 kcal (2) G-P(sol) polarization free energy of solvation -31.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds