Wall clock time and date at job start Fri Apr 10 2020 14:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42902 * 109.47014 * 2 1 4 4 C 1.34947 * 116.99865 * 179.97438 * 3 2 1 5 5 O 1.21677 * 119.99652 * 0.02562 * 4 3 2 6 6 C 1.41455 * 120.00057 * 179.97438 * 4 3 2 7 7 C 1.35040 * 121.13003 * 172.54853 * 6 4 3 8 8 C 1.50695 * 119.46750 * 0.02907 * 7 6 4 9 9 N 1.36564 * 121.06789 * 179.77097 * 7 6 4 10 10 C 1.33892 * 123.68089 * 0.53906 * 9 7 6 11 11 O 1.21559 * 118.92495 * 179.76239 * 10 9 7 12 12 N 1.34771 * 122.15019 * 359.73560 * 10 9 7 13 13 C 1.47254 * 118.41941 * 0.02562 * 12 10 9 14 14 H 1.09004 * 107.95712 * 238.11165 * 13 12 10 15 15 C 1.50702 * 107.95545 * 121.88402 * 13 12 10 16 16 C 1.38306 * 119.92681 * 312.44696 * 15 13 12 17 17 C 1.38106 * 120.06330 * 179.72610 * 16 15 13 18 18 C 1.38877 * 119.93229 * 0.55144 * 17 16 15 19 19 O 1.35747 * 120.06664 * 179.74906 * 18 17 16 20 20 C 1.34826 * 117.00192 * 5.53593 * 19 18 17 21 21 H 1.08000 * 120.00289 * 354.91440 * 20 19 18 22 22 C 1.38652 * 120.00026 * 174.92241 * 20 19 18 23 23 N 1.31563 * 120.00250 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00077 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47141 * 59.99827 * 24 22 20 26 26 H 1.48503 * 109.47354 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47065 * 299.99787 * 24 22 20 28 28 C 1.38882 * 119.86215 * 359.72290 * 18 17 16 29 29 C 1.38101 * 119.92886 * 0.02562 * 28 18 17 30 30 H 1.09001 * 109.47082 * 300.00248 * 1 2 3 31 31 H 1.08998 * 109.46648 * 59.99939 * 1 2 3 32 32 H 1.08998 * 109.47045 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46958 * 119.99266 * 2 1 3 34 34 H 1.08997 * 109.47388 * 239.99350 * 2 1 3 35 35 H 1.09000 * 109.47327 * 83.96601 * 8 7 6 36 36 H 1.09000 * 109.47779 * 203.96800 * 8 7 6 37 37 H 1.09006 * 109.47395 * 323.96798 * 8 7 6 38 38 H 0.97005 * 118.15543 * 180.25744 * 9 7 6 39 39 H 0.96996 * 120.78588 * 180.02562 * 12 10 9 40 40 H 1.07997 * 119.96316 * 0.02562 * 16 15 13 41 41 H 1.07996 * 120.02668 * 180.27191 * 17 16 15 42 42 H 0.96995 * 120.00552 * 180.02562 * 23 22 20 43 43 H 1.07992 * 120.03173 * 180.02562 * 28 18 17 44 44 H 1.07997 * 119.96478 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3442 1.5241 0.0005 5 8 4.0853 0.5591 0.0005 6 6 3.8849 2.8313 0.0000 7 6 5.2108 3.0384 0.1504 8 6 6.1309 1.8572 0.3212 9 7 5.7320 4.3006 0.1451 10 6 4.9932 5.4084 0.0051 11 8 5.5475 6.4902 0.0172 12 7 3.6551 5.3633 -0.1493 13 6 2.9951 4.0470 -0.1623 14 1 2.4612 3.9481 -1.1074 15 6 1.9744 4.0281 0.9462 16 6 2.3220 4.4643 2.2119 17 6 1.3873 4.4535 3.2284 18 6 0.1004 3.9934 2.9816 19 8 -0.8191 3.9768 3.9801 20 6 -0.4553 4.5260 5.1565 21 1 0.5556 4.8787 5.2981 22 6 -1.3790 4.6379 6.1844 23 7 -2.6106 4.2087 6.0118 24 14 -0.8752 5.3995 7.8140 25 1 -0.4187 6.7945 7.5884 26 1 -2.0369 5.4028 8.7391 27 1 0.2304 4.6072 8.4099 28 6 -0.2440 3.5507 1.7110 29 6 0.6938 3.5689 0.6974 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5137 0.8901 34 1 1.8934 -0.5139 -0.8899 35 1 6.3911 1.4548 -0.6578 36 1 7.0377 2.1743 0.8363 37 1 5.6296 1.0879 0.9086 38 1 6.6909 4.4004 0.2528 39 1 3.1391 6.1785 -0.2494 40 1 3.3241 4.8181 2.4041 41 1 1.6582 4.7983 4.2154 42 1 -3.2569 4.2873 6.7308 43 1 -1.2440 3.1928 1.5160 44 1 0.4266 3.2252 -0.2909 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006154386.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:52:46 Heat of formation + Delta-G solvation = -87.771414 kcal Electronic energy + Delta-G solvation = -31107.598815 eV Core-core repulsion = 26798.705702 eV Total energy + Delta-G solvation = -4308.893112 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.66233 -40.27128 -39.03719 -37.60846 -37.04957 -36.19101 -34.77861 -32.47639 -32.22560 -31.44296 -30.19834 -29.88650 -28.39532 -25.61690 -24.57338 -24.08711 -22.90181 -21.98978 -21.88626 -20.64987 -19.56066 -18.16114 -17.96296 -17.19476 -17.08082 -16.91505 -16.55903 -15.99737 -15.95371 -15.39970 -14.64985 -14.54957 -14.47070 -14.29084 -13.79290 -13.64017 -13.54081 -13.45355 -13.29674 -13.10434 -12.73956 -12.64609 -12.48357 -12.09022 -11.78728 -11.68583 -11.58242 -11.51303 -11.22447 -11.15263 -10.78583 -10.74730 -10.50168 -10.43436 -10.33664 -10.12710 -9.51551 -9.36069 -8.84663 -8.34259 -8.15696 -7.21575 -6.48151 -4.06840 0.78437 2.15120 2.21605 2.41766 2.73656 3.01191 3.10286 3.11526 3.12605 3.15144 3.40575 3.94466 4.13891 4.55650 4.76857 4.82963 5.03133 5.05851 5.10244 5.17888 5.27445 5.30362 5.32874 5.35241 5.39743 5.56228 5.69584 5.71484 5.78968 5.87566 5.90013 6.04253 6.17056 6.21723 6.37952 6.44048 6.64855 6.68731 6.80210 6.89173 7.02568 7.23095 7.26445 7.36350 7.42093 7.79816 7.91420 7.97008 8.12544 8.97663 9.67072 10.69539 Molecular weight = 346.14amu Principal moments of inertia in cm(-1) A = 0.010686 B = 0.003647 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.624822 B = 7675.862191 C = 9195.557861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.065 3.935 3 O -0.330 6.330 4 C 0.539 3.461 5 O -0.527 6.527 6 C -0.264 4.264 7 C 0.238 3.762 8 C -0.134 4.134 9 N -0.648 5.648 10 C 0.704 3.296 11 O -0.575 6.575 12 N -0.705 5.705 13 C 0.248 3.752 14 H 0.082 0.918 15 C -0.208 4.208 16 C -0.048 4.048 17 C -0.238 4.238 18 C 0.161 3.839 19 O -0.176 6.176 20 C -0.392 4.392 21 H 0.091 0.909 22 C 0.041 3.959 23 N -0.862 5.862 24 Si 0.939 3.061 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 C -0.196 4.196 29 C -0.030 4.030 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.096 0.904 36 H 0.068 0.932 37 H 0.120 0.880 38 H 0.426 0.574 39 H 0.432 0.568 40 H 0.095 0.905 41 H 0.124 0.876 42 H 0.271 0.729 43 H 0.116 0.884 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.480 -5.863 -13.543 19.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.010 4.010 3 O -0.246 6.246 4 C 0.388 3.612 5 O -0.421 6.421 6 C -0.273 4.273 7 C 0.132 3.868 8 C -0.190 4.190 9 N -0.291 5.291 10 C 0.404 3.596 11 O -0.452 6.452 12 N -0.364 5.364 13 C 0.143 3.857 14 H 0.099 0.901 15 C -0.211 4.211 16 C -0.067 4.067 17 C -0.257 4.257 18 C 0.107 3.893 19 O -0.079 6.079 20 C -0.468 4.468 21 H 0.108 0.892 22 C -0.164 4.164 23 N -0.496 5.496 24 Si 0.764 3.236 25 H -0.195 1.195 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.216 4.216 29 C -0.048 4.048 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.138 0.862 38 H 0.265 0.735 39 H 0.274 0.726 40 H 0.114 0.886 41 H 0.142 0.858 42 H 0.081 0.919 43 H 0.134 0.866 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 12.379 -5.690 -13.393 19.104 hybrid contribution 0.425 0.575 1.051 1.271 sum 12.804 -5.115 -12.341 18.504 Atomic orbital electron populations 1.21824 0.92546 1.02656 1.04065 1.22575 0.95568 0.81040 1.01805 1.86373 1.23047 1.31282 1.83861 1.18429 0.81080 0.88424 0.73232 1.90800 1.59681 1.42844 1.48786 1.18839 0.92108 0.93171 1.23133 1.20129 0.93504 0.86056 0.87064 1.21545 0.97637 0.94921 1.04945 1.42289 1.12385 1.03605 1.70834 1.15774 0.82854 0.83367 0.77634 1.91038 1.70770 1.26059 1.57342 1.45472 1.04709 1.10150 1.76052 1.18294 0.89780 0.79479 0.98149 0.90064 1.19349 0.95000 1.12120 0.94594 1.20377 0.97350 0.96825 0.92141 1.21080 0.94087 1.10359 1.00202 1.19425 0.88821 0.92127 0.88960 1.83972 1.36746 1.68142 1.19022 1.21268 0.98002 1.39865 0.87677 0.89182 1.25270 0.94745 0.97056 0.99302 1.70022 1.03030 1.43129 1.33460 0.85806 0.78270 0.79493 0.80038 1.19483 1.20226 1.19522 1.20134 1.00206 1.10176 0.91034 1.20328 0.91423 0.95433 0.97652 0.90646 0.91676 0.90744 0.91761 0.92057 0.88594 0.91347 0.86213 0.73526 0.72618 0.88641 0.85834 0.91942 0.86604 0.86795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.28 37.16 0.38 -1.18 16 2 C 0.06 0.74 6.10 37.16 0.23 0.96 16 3 O -0.33 -4.38 6.66 -41.17 -0.27 -4.66 16 4 C 0.54 7.19 7.45 31.96 0.24 7.43 16 5 O -0.53 -7.27 12.89 -19.40 -0.25 -7.52 16 6 C -0.26 -3.27 5.28 -104.13 -0.55 -3.82 16 7 C 0.24 2.47 6.84 -81.62 -0.56 1.91 16 8 C -0.13 -1.10 8.68 36.00 0.31 -0.78 16 9 N -0.65 -6.57 5.14 -12.87 -0.07 -6.63 16 10 C 0.70 9.17 8.63 -87.71 -0.76 8.41 16 11 O -0.58 -9.22 17.94 5.31 0.10 -9.13 16 12 N -0.71 -8.70 4.80 -60.29 -0.29 -8.98 16 13 C 0.25 3.14 3.19 -69.41 -0.22 2.92 16 14 H 0.08 0.94 7.86 -51.93 -0.41 0.53 16 15 C -0.21 -3.26 4.17 -104.57 -0.44 -3.69 16 16 C -0.05 -0.86 9.29 -39.60 -0.37 -1.23 16 17 C -0.24 -5.06 9.17 -39.39 -0.36 -5.42 16 18 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 19 O -0.18 -4.88 9.76 0.07 0.00 -4.88 16 20 C -0.39 -10.79 9.49 30.89 0.29 -10.49 16 21 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 22 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 23 N -0.86 -24.87 13.67 55.48 0.76 -24.11 16 24 Si 0.94 20.38 29.55 -169.99 -5.02 15.36 16 25 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 26 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 27 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 28 C -0.20 -3.84 9.99 -39.39 -0.39 -4.24 16 29 C -0.03 -0.48 7.59 -39.61 -0.30 -0.78 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 34 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.39 8.05 -51.93 -0.42 -0.03 16 37 H 0.12 1.23 5.74 -51.93 -0.30 0.93 16 38 H 0.43 3.22 8.58 -40.82 -0.35 2.87 16 39 H 0.43 4.98 8.93 -40.82 -0.36 4.62 16 40 H 0.10 1.62 7.90 -52.49 -0.41 1.21 16 41 H 0.12 2.70 5.64 -52.49 -0.30 2.40 16 42 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.12 2.20 8.06 -52.49 -0.42 1.77 16 44 H 0.11 1.55 7.62 -52.49 -0.40 1.15 16 LS Contribution 370.72 15.07 5.59 5.59 Total: -1.00 -32.88 370.72 -7.63 -40.51 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -5.32 Total: 9.98 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -2.85 Total: -5.51 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.40 Total: -39.73 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.43 Total: -26.19 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.88 -7.63 -40.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006154386.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.261 kcal (2) G-P(sol) polarization free energy of solvation -32.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds