Wall clock time and date at job start Fri Apr 10 2020 14:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42902 * 109.47014 * 2 1 4 4 C 1.34947 * 116.99865 * 179.97438 * 3 2 1 5 5 O 1.21677 * 119.99652 * 0.02562 * 4 3 2 6 6 C 1.41455 * 120.00057 * 179.97438 * 4 3 2 7 7 C 1.35040 * 121.13003 * 172.54853 * 6 4 3 8 8 C 1.50695 * 119.46750 * 0.02907 * 7 6 4 9 9 N 1.36564 * 121.06789 * 179.77097 * 7 6 4 10 10 C 1.33892 * 123.68089 * 0.53906 * 9 7 6 11 11 O 1.21559 * 118.92495 * 179.76239 * 10 9 7 12 12 N 1.34771 * 122.15019 * 359.73560 * 10 9 7 13 13 C 1.47254 * 118.41941 * 0.02562 * 12 10 9 14 14 H 1.09004 * 107.95712 * 238.11165 * 13 12 10 15 15 C 1.50702 * 107.95545 * 121.88402 * 13 12 10 16 16 C 1.38306 * 119.92681 * 312.44696 * 15 13 12 17 17 C 1.38106 * 120.06330 * 179.72610 * 16 15 13 18 18 C 1.38877 * 119.93229 * 0.55144 * 17 16 15 19 19 O 1.35747 * 120.06664 * 179.74906 * 18 17 16 20 20 C 1.34826 * 117.00192 * 5.53593 * 19 18 17 21 21 H 1.08000 * 120.00289 * 354.91440 * 20 19 18 22 22 C 1.38652 * 120.00026 * 174.92241 * 20 19 18 23 23 N 1.31563 * 120.00250 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00077 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47141 * 59.99827 * 24 22 20 26 26 H 1.48503 * 109.47354 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47065 * 299.99787 * 24 22 20 28 28 C 1.38882 * 119.86215 * 359.72290 * 18 17 16 29 29 C 1.38101 * 119.92886 * 0.02562 * 28 18 17 30 30 H 1.09001 * 109.47082 * 300.00248 * 1 2 3 31 31 H 1.08998 * 109.46648 * 59.99939 * 1 2 3 32 32 H 1.08998 * 109.47045 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46958 * 119.99266 * 2 1 3 34 34 H 1.08997 * 109.47388 * 239.99350 * 2 1 3 35 35 H 1.09000 * 109.47327 * 83.96601 * 8 7 6 36 36 H 1.09000 * 109.47779 * 203.96800 * 8 7 6 37 37 H 1.09006 * 109.47395 * 323.96798 * 8 7 6 38 38 H 0.97005 * 118.15543 * 180.25744 * 9 7 6 39 39 H 0.96996 * 120.78588 * 180.02562 * 12 10 9 40 40 H 1.07997 * 119.96316 * 0.02562 * 16 15 13 41 41 H 1.07996 * 120.02668 * 180.27191 * 17 16 15 42 42 H 0.96995 * 120.00552 * 180.02562 * 23 22 20 43 43 H 1.07992 * 120.03173 * 180.02562 * 28 18 17 44 44 H 1.07997 * 119.96478 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3442 1.5241 0.0005 5 8 4.0853 0.5591 0.0005 6 6 3.8849 2.8313 0.0000 7 6 5.2108 3.0384 0.1504 8 6 6.1309 1.8572 0.3212 9 7 5.7320 4.3006 0.1451 10 6 4.9932 5.4084 0.0051 11 8 5.5475 6.4902 0.0172 12 7 3.6551 5.3633 -0.1493 13 6 2.9951 4.0470 -0.1623 14 1 2.4612 3.9481 -1.1074 15 6 1.9744 4.0281 0.9462 16 6 2.3220 4.4643 2.2119 17 6 1.3873 4.4535 3.2284 18 6 0.1004 3.9934 2.9816 19 8 -0.8191 3.9768 3.9801 20 6 -0.4553 4.5260 5.1565 21 1 0.5556 4.8787 5.2981 22 6 -1.3790 4.6379 6.1844 23 7 -2.6106 4.2087 6.0118 24 14 -0.8752 5.3995 7.8140 25 1 -0.4187 6.7945 7.5884 26 1 -2.0369 5.4028 8.7391 27 1 0.2304 4.6072 8.4099 28 6 -0.2440 3.5507 1.7110 29 6 0.6938 3.5689 0.6974 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5137 0.8901 34 1 1.8934 -0.5139 -0.8899 35 1 6.3911 1.4548 -0.6578 36 1 7.0377 2.1743 0.8363 37 1 5.6296 1.0879 0.9086 38 1 6.6909 4.4004 0.2528 39 1 3.1391 6.1785 -0.2494 40 1 3.3241 4.8181 2.4041 41 1 1.6582 4.7983 4.2154 42 1 -3.2569 4.2873 6.7308 43 1 -1.2440 3.1928 1.5160 44 1 0.4266 3.2252 -0.2909 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006154386.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:52:44 Heat of formation + Delta-G solvation = -109.477908 kcal Electronic energy + Delta-G solvation = -31108.540079 eV Core-core repulsion = 26798.705702 eV Total energy + Delta-G solvation = -4309.834376 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.67627 -41.27090 -40.69386 -38.76048 -38.43228 -37.26313 -35.99650 -34.25425 -33.38972 -32.31343 -31.75286 -31.09468 -29.50770 -27.45623 -25.87659 -25.03607 -23.83282 -23.56609 -22.85483 -22.16903 -20.52859 -19.84101 -19.10725 -18.91201 -18.06696 -17.95784 -17.65928 -17.08529 -17.01246 -16.39591 -16.31155 -16.10843 -15.87069 -15.47998 -15.22229 -15.14379 -14.67039 -14.41694 -14.29841 -14.26711 -14.13148 -13.99003 -13.51906 -13.33793 -13.22252 -12.89284 -12.70173 -12.66288 -12.45431 -12.40484 -12.35402 -12.18911 -12.12325 -11.64918 -11.29813 -11.16752 -11.07315 -10.80910 -10.57486 -9.69970 -9.31861 -8.88607 -8.46741 -6.14214 -0.14629 0.64831 0.69695 1.33890 1.39195 1.44909 1.49202 1.71259 2.02876 2.13787 2.17332 2.39997 2.83271 3.13901 3.40461 3.54834 3.79460 3.94365 4.07440 4.10799 4.16359 4.22197 4.23604 4.36745 4.48271 4.54507 4.64136 4.66576 4.72402 4.81948 4.89401 5.02807 5.05267 5.10228 5.16041 5.20599 5.31881 5.35292 5.59640 5.63158 5.70635 5.74437 5.77900 5.89363 6.04215 6.23405 6.28269 6.93113 6.98412 7.12226 7.79501 8.75862 Molecular weight = 346.14amu Principal moments of inertia in cm(-1) A = 0.010686 B = 0.003647 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.624822 B = 7675.862191 C = 9195.557861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.062 3.938 3 O -0.343 6.343 4 C 0.535 3.465 5 O -0.537 6.537 6 C -0.292 4.292 7 C 0.262 3.738 8 C -0.132 4.132 9 N -0.635 5.635 10 C 0.704 3.296 11 O -0.604 6.604 12 N -0.701 5.701 13 C 0.254 3.746 14 H 0.104 0.896 15 C -0.176 4.176 16 C -0.049 4.049 17 C -0.248 4.248 18 C 0.122 3.878 19 O -0.229 6.229 20 C -0.412 4.412 21 H 0.096 0.904 22 C -0.019 4.019 23 N -0.917 5.917 24 Si 1.013 2.987 25 H -0.260 1.260 26 H -0.270 1.270 27 H -0.259 1.259 28 C -0.197 4.197 29 C -0.015 4.015 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.440 0.560 39 H 0.436 0.564 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.273 0.727 43 H 0.116 0.884 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.255 -6.026 -15.492 22.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.012 4.012 3 O -0.259 6.259 4 C 0.386 3.614 5 O -0.431 6.431 6 C -0.301 4.301 7 C 0.155 3.845 8 C -0.188 4.188 9 N -0.278 5.278 10 C 0.404 3.596 11 O -0.483 6.483 12 N -0.360 5.360 13 C 0.150 3.850 14 H 0.122 0.878 15 C -0.178 4.178 16 C -0.067 4.067 17 C -0.268 4.268 18 C 0.071 3.929 19 O -0.136 6.136 20 C -0.489 4.489 21 H 0.114 0.886 22 C -0.217 4.217 23 N -0.555 5.555 24 Si 0.832 3.168 25 H -0.184 1.184 26 H -0.194 1.194 27 H -0.184 1.184 28 C -0.216 4.216 29 C -0.034 4.034 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.129 0.871 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.282 0.718 39 H 0.278 0.722 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.082 0.918 43 H 0.134 0.866 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 15.207 -5.862 -15.389 22.415 hybrid contribution -0.181 0.554 1.308 1.432 sum 15.026 -5.308 -14.081 21.265 Atomic orbital electron populations 1.21820 0.91774 1.03796 1.03253 1.22700 0.96117 0.80394 1.02022 1.86328 1.23269 1.32330 1.83976 1.18554 0.81022 0.88708 0.73163 1.90803 1.59747 1.43145 1.49426 1.18734 0.92869 0.92414 1.26087 1.20406 0.93377 0.86509 0.84163 1.21586 0.98061 0.93336 1.05784 1.42206 1.13047 1.02883 1.69649 1.15866 0.82930 0.83528 0.77270 1.91034 1.71282 1.27396 1.58601 1.45432 1.04738 1.10177 1.75633 1.18311 0.89349 0.79882 0.97487 0.87783 1.19810 0.95499 1.07844 0.94665 1.20504 0.97222 0.96817 0.92197 1.21100 0.94223 1.10816 1.00634 1.19950 0.89280 0.94097 0.89562 1.83936 1.38725 1.70862 1.20031 1.21691 0.98565 1.40232 0.88377 0.88639 1.26477 0.94598 0.97480 1.03119 1.70160 1.04490 1.45941 1.34955 0.84733 0.78269 0.78809 0.74963 1.18448 1.19413 1.18385 1.20384 1.01198 1.09494 0.90552 1.20668 0.90692 0.93828 0.98176 0.93251 0.90497 0.88800 0.92870 0.90492 0.87077 0.88305 0.87941 0.71800 0.72152 0.87263 0.87307 0.91838 0.86586 0.83155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 10.28 71.98 0.74 -2.09 16 2 C 0.06 1.31 6.10 71.98 0.44 1.75 16 3 O -0.34 -8.34 6.66 -58.64 -0.39 -8.73 16 4 C 0.54 12.92 7.45 68.61 0.51 13.43 16 5 O -0.54 -13.56 12.89 19.26 0.25 -13.31 16 6 C -0.29 -6.30 5.28 -19.54 -0.10 -6.40 16 7 C 0.26 4.48 6.84 41.08 0.28 4.76 16 8 C -0.13 -1.64 8.68 71.23 0.62 -1.03 16 9 N -0.63 -10.50 5.14 -313.39 -1.61 -12.11 16 10 C 0.70 16.17 8.63 179.33 1.55 17.72 16 11 O -0.60 -17.90 17.94 -3.90 -0.07 -17.97 16 12 N -0.70 -15.11 4.80 -462.95 -2.22 -17.33 16 13 C 0.25 5.58 3.19 43.62 0.14 5.72 16 14 H 0.10 1.92 7.86 -2.39 -0.02 1.90 16 15 C -0.18 -5.10 4.17 -19.83 -0.08 -5.18 16 16 C -0.05 -1.69 9.29 22.25 0.21 -1.49 16 17 C -0.25 -10.83 9.17 22.39 0.21 -10.62 16 18 C 0.12 5.89 6.65 22.58 0.15 6.04 16 19 O -0.23 -13.58 9.76 -22.67 -0.22 -13.80 16 20 C -0.41 -24.00 9.49 67.92 0.64 -23.36 16 21 H 0.10 5.18 5.20 -2.91 -0.02 5.17 16 22 C -0.02 -1.07 5.49 84.83 0.47 -0.60 16 23 N -0.92 -55.86 13.67 21.61 0.30 -55.56 16 24 Si 1.01 43.07 29.55 68.60 2.03 45.10 16 25 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 26 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 27 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 28 C -0.20 -7.81 9.99 22.39 0.22 -7.58 16 29 C -0.02 -0.46 7.59 22.25 0.17 -0.29 16 30 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.05 1.23 8.13 -2.38 -0.02 1.21 16 34 H 0.08 1.39 8.13 -2.39 -0.02 1.37 16 35 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.10 0.67 8.05 -2.39 -0.02 0.65 16 37 H 0.10 1.81 5.74 -2.38 -0.01 1.80 16 38 H 0.44 4.90 8.58 -92.70 -0.80 4.11 16 39 H 0.44 8.82 8.93 -92.71 -0.83 7.99 16 40 H 0.11 3.50 7.90 -2.91 -0.02 3.47 16 41 H 0.11 4.98 5.64 -2.91 -0.02 4.97 16 42 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 43 H 0.12 4.53 8.06 -2.91 -0.02 4.50 16 44 H 0.15 3.52 7.62 -2.91 -0.02 3.50 16 Total: -1.00 -76.34 370.72 3.67 -72.67 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: -0.54 Total: 30.27 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: 6.16 Total: -9.23 kcal Atomic # 7 Polarization: -81.46 SS G_CDS: -3.54 Total: -85.00 kcal Atomic # 8 Polarization: -53.38 SS G_CDS: -0.43 Total: -53.81 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -76.34 3.67 -72.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006154386.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.807 kcal (2) G-P(sol) polarization free energy of solvation -76.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds