Wall clock time and date at job start Fri Apr 10 2020 14:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.65277 * 2 1 4 4 C 1.54591 * 110.98814 * 236.83932 * 2 1 3 5 5 N 1.48117 * 103.42303 * 204.37489 * 4 2 1 6 6 C 1.34775 * 127.03458 * 219.28683 * 5 4 2 7 7 O 1.21283 * 119.99894 * 179.68089 * 6 5 4 8 8 C 1.50703 * 119.99974 * 359.68706 * 6 5 4 9 9 H 1.08998 * 109.47001 * 300.00113 * 8 6 5 10 10 C 1.50697 * 109.47260 * 59.99577 * 8 6 5 11 11 H 1.07994 * 120.00218 * 236.34552 * 10 8 6 12 12 C 1.37881 * 119.99976 * 56.34995 * 10 8 6 13 13 N 1.31522 * 119.99863 * 354.57272 * 12 10 8 14 14 Si 1.86803 * 120.00254 * 174.57267 * 12 10 8 15 15 H 1.48503 * 109.46730 * 89.99791 * 14 12 10 16 16 H 1.48498 * 109.47221 * 209.99482 * 14 12 10 17 17 H 1.48504 * 109.46977 * 330.00215 * 14 12 10 18 18 C 1.50695 * 109.46984 * 179.97438 * 8 6 5 19 19 C 1.38238 * 120.00273 * 226.92446 * 18 8 6 20 20 C 1.38239 * 120.00324 * 180.02562 * 19 18 8 21 21 C 1.38237 * 119.99658 * 0.06707 * 20 19 18 22 22 C 1.38232 * 120.00284 * 359.97438 * 21 20 19 23 23 C 1.38236 * 119.99893 * 359.97438 * 22 21 20 24 24 C 1.47484 * 105.93333 * 39.02438 * 5 4 2 25 25 C 1.54006 * 107.08230 * 334.78122 * 24 5 4 26 26 H 1.09002 * 110.32616 * 120.30190 * 25 24 5 27 27 N 1.46903 * 110.32901 * 242.41022 * 25 24 5 28 28 C 1.47016 * 110.99721 * 296.39912 * 27 25 24 29 29 C 1.53100 * 109.25404 * 177.60294 * 28 27 25 30 30 O 1.43017 * 109.26113 * 56.84984 * 29 28 27 31 31 C 1.43019 * 113.73790 * 301.33143 * 30 29 28 32 32 C 1.47008 * 111.00498 * 172.76267 * 27 25 24 33 33 H 1.08996 * 109.47386 * 296.81328 * 1 2 3 34 34 H 1.09002 * 109.47239 * 56.80973 * 1 2 3 35 35 H 1.08997 * 109.47008 * 176.81448 * 1 2 3 36 36 H 1.08998 * 110.61586 * 85.86193 * 4 2 1 37 37 H 1.09001 * 110.54984 * 322.85735 * 4 2 1 38 38 H 0.96998 * 119.99613 * 180.02562 * 13 12 10 39 39 H 1.08007 * 119.99665 * 0.10869 * 19 18 8 40 40 H 1.07996 * 120.00079 * 180.34396 * 20 19 18 41 41 H 1.08000 * 119.99284 * 179.97438 * 21 20 19 42 42 H 1.07995 * 119.99975 * 179.97438 * 22 21 20 43 43 H 1.07995 * 120.00054 * 179.97438 * 23 22 21 44 44 H 1.09000 * 109.91279 * 94.13657 * 24 5 4 45 45 H 1.08994 * 109.91620 * 215.22693 * 24 5 4 46 46 H 1.08996 * 109.50678 * 297.53588 * 28 27 25 47 47 H 1.08997 * 109.50872 * 57.67430 * 28 27 25 48 48 H 1.09003 * 109.51064 * 296.91594 * 29 28 27 49 49 H 1.09004 * 109.50890 * 176.78171 * 29 28 27 50 50 H 1.09009 * 109.50204 * 298.73301 * 31 30 29 51 51 H 1.08992 * 109.51090 * 178.60456 * 31 30 29 52 52 H 1.09005 * 109.50421 * 302.33049 * 32 27 25 53 53 H 1.08997 * 109.50675 * 62.41236 * 32 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9145 1.0200 0.0000 4 6 2.0838 -0.7895 -1.2083 5 7 3.4321 -1.2057 -0.7583 6 6 4.5593 -1.2407 -1.4963 7 8 5.6027 -1.6001 -0.9932 8 6 4.5233 -0.8330 -2.9467 9 1 3.8334 -1.4797 -3.4888 10 6 4.0612 0.5973 -3.0552 11 1 3.2005 0.8424 -3.6597 12 6 4.7374 1.5931 -2.3827 13 7 5.7184 1.2839 -1.5630 14 14 4.2603 3.3813 -2.6358 15 1 3.2208 3.7611 -1.6456 16 1 5.4558 4.2432 -2.4536 17 1 3.7249 3.5611 -4.0092 18 6 5.9031 -0.9609 -3.5389 19 6 6.4250 0.0655 -4.3036 20 6 7.6906 -0.0520 -4.8473 21 6 8.4336 -1.1968 -4.6273 22 6 7.9115 -2.2236 -3.8632 23 6 6.6464 -2.1055 -3.3187 24 6 3.2903 -1.5681 0.6643 25 6 2.0775 -0.7915 1.2101 26 1 1.3229 -1.4829 1.5852 27 7 2.4982 0.1296 2.2743 28 6 3.0388 -0.6074 3.4258 29 6 3.5189 0.3900 4.4834 30 8 2.4346 1.2474 4.8501 31 6 1.8843 1.9810 3.7526 32 6 1.3877 0.9997 2.6876 33 1 -0.3634 0.4635 0.9171 34 1 -0.3634 0.5626 -0.8600 35 1 -0.3633 -1.0261 -0.0571 36 1 2.1525 -0.1481 -2.0869 37 1 1.4612 -1.6602 -1.4142 38 1 6.1938 1.9844 -1.0896 39 1 5.8445 0.9600 -4.4753 40 1 8.1005 0.7522 -5.4401 41 1 9.4222 -1.2887 -5.0524 42 1 8.4919 -3.1180 -3.6917 43 1 6.2382 -2.9079 -2.7222 44 1 3.1178 -2.6401 0.7589 45 1 4.1908 -1.2875 1.2104 46 1 2.2603 -1.2414 3.8502 47 1 3.8761 -1.2255 3.1018 48 1 4.3342 0.9881 4.0762 49 1 3.8680 -0.1516 5.3627 50 1 2.6520 2.6254 3.3241 51 1 1.0511 2.5901 4.1032 52 1 1.0196 1.5547 1.8246 53 1 0.5825 0.3914 3.0994 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095995245.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:51:36 Heat of formation + Delta-G solvation = -51.232968 kcal Electronic energy + Delta-G solvation = -34422.184781 eV Core-core repulsion = 30258.316143 eV Total energy + Delta-G solvation = -4163.868638 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 358.204 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.33850 -40.47245 -39.44301 -38.25360 -35.89238 -35.43440 -33.42943 -32.65147 -32.04977 -31.37242 -30.53073 -28.93375 -27.17457 -27.08119 -25.60348 -25.03074 -23.41202 -22.95167 -21.95724 -21.44398 -20.82494 -20.00071 -18.78087 -18.02025 -17.37063 -17.10796 -17.05425 -16.67559 -16.53429 -16.20065 -15.97409 -15.74417 -15.51097 -15.39907 -15.27338 -15.10752 -14.57764 -14.32525 -14.03265 -13.95137 -13.80661 -13.49404 -13.39699 -13.24884 -13.07683 -12.95149 -12.80144 -12.65327 -12.55482 -12.53068 -12.38575 -12.28343 -11.96149 -11.79467 -11.75986 -11.49347 -11.43061 -11.35972 -11.16511 -10.68673 -10.61541 -10.11569 -9.39988 -9.33630 -9.20433 -9.10568 -8.05006 -6.19689 0.85912 0.90811 1.39671 1.45170 1.51710 2.30151 2.42041 2.56762 2.79304 2.92121 3.23230 3.32765 3.52140 3.73108 3.92031 3.98394 4.11906 4.15400 4.23295 4.26320 4.29936 4.32773 4.34633 4.48634 4.49801 4.55110 4.58072 4.63930 4.65200 4.70052 4.74552 4.75366 4.85790 4.89510 4.92891 4.96551 5.00018 5.06040 5.09048 5.14355 5.17836 5.34690 5.44604 5.45665 5.52794 5.71338 5.83590 5.88711 5.94817 5.97903 5.98131 6.08765 6.11923 6.41753 6.51517 6.78498 7.13697 7.45586 7.94095 8.94933 Molecular weight = 358.20amu Principal moments of inertia in cm(-1) A = 0.012015 B = 0.003621 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.890473 B = 7731.131566 C = 8257.381599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.091 4.091 3 H 0.060 0.940 4 C 0.104 3.896 5 N -0.620 5.620 6 C 0.569 3.431 7 O -0.591 6.591 8 C 0.055 3.945 9 H 0.063 0.937 10 C -0.524 4.524 11 H 0.073 0.927 12 C 0.047 3.953 13 N -0.869 5.869 14 Si 0.930 3.070 15 H -0.277 1.277 16 H -0.299 1.299 17 H -0.258 1.258 18 C -0.037 4.037 19 C -0.092 4.092 20 C -0.151 4.151 21 C -0.141 4.141 22 C -0.146 4.146 23 C -0.119 4.119 24 C 0.116 3.884 25 C 0.091 3.909 26 H 0.075 0.925 27 N -0.550 5.550 28 C 0.020 3.980 29 C 0.066 3.934 30 O -0.397 6.397 31 C 0.061 3.939 32 C 0.023 3.977 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.252 0.748 39 H 0.115 0.885 40 H 0.128 0.872 41 H 0.139 0.861 42 H 0.129 0.871 43 H 0.097 0.903 44 H 0.063 0.937 45 H 0.043 0.957 46 H 0.054 0.946 47 H 0.076 0.924 48 H 0.041 0.959 49 H 0.119 0.881 50 H 0.042 0.958 51 H 0.122 0.878 52 H 0.092 0.908 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.781 -2.736 5.214 12.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.110 4.110 3 H 0.079 0.921 4 C -0.019 4.019 5 N -0.353 5.353 6 C 0.362 3.638 7 O -0.471 6.471 8 C 0.034 3.966 9 H 0.081 0.919 10 C -0.561 4.561 11 H 0.091 0.909 12 C -0.158 4.158 13 N -0.503 5.503 14 Si 0.757 3.243 15 H -0.203 1.203 16 H -0.225 1.225 17 H -0.182 1.182 18 C -0.038 4.038 19 C -0.110 4.110 20 C -0.169 4.169 21 C -0.159 4.159 22 C -0.164 4.164 23 C -0.137 4.137 24 C -0.008 4.008 25 C -0.018 4.018 26 H 0.093 0.907 27 N -0.276 5.276 28 C -0.108 4.108 29 C -0.011 4.011 30 O -0.316 6.316 31 C -0.016 4.016 32 C -0.104 4.104 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.061 0.939 39 H 0.133 0.867 40 H 0.146 0.854 41 H 0.157 0.843 42 H 0.147 0.853 43 H 0.115 0.885 44 H 0.081 0.919 45 H 0.062 0.938 46 H 0.072 0.928 47 H 0.095 0.905 48 H 0.060 0.940 49 H 0.137 0.863 50 H 0.060 0.940 51 H 0.140 0.860 52 H 0.110 0.890 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.683 -2.549 5.548 11.447 hybrid contribution -0.055 0.681 0.297 0.745 sum -9.738 -1.867 5.845 11.510 Atomic orbital electron populations 1.21804 0.91473 1.03154 1.02839 1.22183 0.97102 0.98749 0.92997 0.92130 1.22704 0.81877 0.98581 0.98730 1.48459 1.09195 1.67463 1.10195 1.20780 0.80527 0.72832 0.89683 1.90488 1.31347 1.50604 1.74683 1.17922 0.92182 0.97949 0.88574 0.91943 1.20704 1.14694 0.89530 1.31201 0.90850 1.25473 0.94528 1.01538 0.94211 1.70209 1.21567 1.32951 1.25598 0.85978 0.77374 0.81815 0.79170 1.20279 1.22524 1.18238 1.19962 0.96802 0.92644 0.94366 1.21183 0.95346 0.98071 0.96438 1.21338 0.95078 0.98625 1.01839 1.21189 1.00272 0.93999 1.00413 1.21199 0.95709 0.99960 0.99509 1.21040 0.95841 0.98142 0.98662 1.21880 0.97976 0.97486 0.83436 1.22549 0.94583 0.93109 0.91565 0.90705 1.62185 1.33783 1.22331 1.09335 1.22765 1.00372 0.96422 0.91193 1.22700 0.88639 0.91553 0.98235 1.87927 1.50561 1.59080 1.34016 1.22801 0.98816 0.93228 0.86773 1.22835 0.92260 0.96140 0.99198 0.91429 0.91411 0.90996 0.88994 0.90300 0.93858 0.86725 0.85399 0.84322 0.85276 0.88528 0.91901 0.93799 0.92813 0.90522 0.94028 0.86310 0.93967 0.85977 0.89020 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 8.90 71.98 0.64 -1.95 16 2 C -0.09 -2.57 2.41 -9.70 -0.02 -2.59 16 3 H 0.06 2.13 7.49 -2.39 -0.02 2.11 16 4 C 0.10 3.42 6.20 86.61 0.54 3.96 16 5 N -0.62 -25.66 3.29 -810.10 -2.66 -28.33 16 6 C 0.57 28.27 5.44 87.66 0.48 28.74 16 7 O -0.59 -33.66 14.22 -3.04 -0.04 -33.70 16 8 C 0.05 2.63 2.33 -13.03 -0.03 2.60 16 9 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 10 C -0.52 -25.17 5.00 25.60 0.13 -25.04 16 11 H 0.07 3.35 7.62 -2.91 -0.02 3.33 16 12 C 0.05 2.40 3.86 84.65 0.33 2.72 16 13 N -0.87 -49.01 11.05 21.45 0.24 -48.77 16 14 Si 0.93 40.78 29.54 68.60 2.03 42.80 16 15 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 16 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 17 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 18 C -0.04 -1.80 4.59 -19.87 -0.09 -1.89 16 19 C -0.09 -4.33 8.37 22.27 0.19 -4.15 16 20 C -0.15 -6.12 10.05 22.27 0.22 -5.90 16 21 C -0.14 -5.28 10.05 22.27 0.22 -5.06 16 22 C -0.15 -5.86 10.05 22.27 0.22 -5.64 16 23 C -0.12 -5.52 8.21 22.27 0.18 -5.34 16 24 C 0.12 4.17 6.14 86.53 0.53 4.71 16 25 C 0.09 2.54 2.32 45.81 0.11 2.65 16 26 H 0.08 1.74 7.86 -2.39 -0.02 1.72 16 27 N -0.55 -15.84 4.50 -864.79 -3.89 -19.74 16 28 C 0.02 0.53 5.40 86.31 0.47 0.99 16 29 C 0.07 1.62 7.01 72.02 0.50 2.13 16 30 O -0.40 -10.22 10.83 -148.98 -1.61 -11.83 16 31 C 0.06 1.40 7.01 72.01 0.50 1.90 16 32 C 0.02 0.54 4.54 86.31 0.39 0.93 16 33 H 0.07 1.13 6.35 -2.39 -0.02 1.11 16 34 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.07 1.17 8.11 -2.39 -0.02 1.15 16 36 H 0.09 3.37 5.44 -2.39 -0.01 3.36 16 37 H 0.08 2.13 8.02 -2.39 -0.02 2.11 16 38 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 39 H 0.11 5.56 6.00 -2.91 -0.02 5.54 16 40 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 41 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 42 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 43 H 0.10 4.59 6.99 -2.91 -0.02 4.57 16 44 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.04 1.88 6.50 -2.39 -0.02 1.86 16 46 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.08 2.15 6.48 -2.39 -0.02 2.13 16 48 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.12 2.31 8.14 -2.38 -0.02 2.30 16 50 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 51 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 52 H 0.09 2.10 5.65 -2.38 -0.01 2.09 16 53 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -68.04 400.88 0.46 -67.58 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: 0.90 Total: 38.20 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: 5.51 Total: -6.22 kcal Atomic # 7 Polarization: -90.52 SS G_CDS: -6.32 Total: -96.83 kcal Atomic # 8 Polarization: -43.88 SS G_CDS: -1.66 Total: -45.53 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.80 kcal Total: -68.04 0.46 -67.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095995245.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.345 kcal (2) G-P(sol) polarization free energy of solvation -68.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds