Wall clock time and date at job start Fri Apr 10 2020 14:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38227 * 119.61624 * 2 1 4 4 C 1.38631 * 119.16237 * 179.97438 * 3 2 1 5 5 C 1.38673 * 118.41671 * 359.97438 * 4 3 2 6 6 C 1.38184 * 119.16559 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.61466 * 179.97438 * 6 5 4 8 8 N 1.46904 * 109.46856 * 95.00263 * 7 6 5 9 9 C 1.46840 * 111.00116 * 45.73490 * 8 7 6 10 10 C 1.53037 * 109.52807 * 185.79652 * 9 8 7 11 11 C 1.53159 * 109.23510 * 300.77046 * 10 9 8 12 12 C 1.53161 * 109.08657 * 57.82223 * 11 10 9 13 13 C 1.46837 * 110.99620 * 169.99569 * 8 7 6 14 14 C 1.50293 * 109.54214 * 297.91952 * 11 10 9 15 15 O 1.21290 * 118.61765 * 42.54050 * 14 11 10 16 16 N 1.33693 * 122.76208 * 222.56750 * 14 11 10 17 17 C 1.37098 * 118.53685 * 181.69159 * 16 14 11 18 18 H 1.08003 * 119.99347 * 21.33018 * 17 16 14 19 19 C 1.38949 * 120.00395 * 201.33303 * 17 16 14 20 20 N 1.31413 * 119.99934 * 16.35642 * 19 17 16 21 21 Si 1.86800 * 119.99986 * 196.35791 * 19 17 16 22 22 H 1.48499 * 109.47106 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46806 * 119.99808 * 21 19 17 24 24 H 1.48497 * 109.47253 * 240.00112 * 21 19 17 25 25 C 1.46010 * 122.93591 * 1.71240 * 16 14 11 26 26 C 1.52981 * 110.03987 * 341.84538 * 25 16 14 27 27 N 1.46920 * 109.35857 * 177.37559 * 11 10 9 28 28 C 1.46901 * 111.00007 * 47.28663 * 27 11 10 29 29 N 1.31857 * 119.62144 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47400 * 270.02455 * 1 2 3 31 31 H 1.09000 * 109.47074 * 30.02618 * 1 2 3 32 32 H 1.09001 * 109.47059 * 150.02162 * 1 2 3 33 33 H 1.08000 * 120.41853 * 359.97438 * 3 2 1 34 34 H 1.07994 * 120.79290 * 179.97438 * 4 3 2 35 35 H 1.08000 * 120.41567 * 179.97438 * 5 4 3 36 36 H 1.09000 * 109.46526 * 214.99478 * 7 6 5 37 37 H 1.09000 * 109.47460 * 334.99992 * 7 6 5 38 38 H 1.08997 * 109.46360 * 305.81552 * 9 8 7 39 39 H 1.09001 * 109.45962 * 65.78228 * 9 8 7 40 40 H 1.08998 * 109.51095 * 180.84039 * 10 9 8 41 41 H 1.08997 * 109.50672 * 60.69679 * 10 9 8 42 42 H 1.09001 * 109.51031 * 182.25409 * 12 11 10 43 43 H 1.08996 * 109.50972 * 62.10811 * 12 11 10 44 44 H 1.09001 * 109.46546 * 294.21461 * 13 8 7 45 45 H 1.09000 * 109.46104 * 54.18874 * 13 8 7 46 46 H 0.96996 * 119.99477 * 180.02562 * 20 19 17 47 47 H 1.08999 * 109.37687 * 102.01844 * 25 16 14 48 48 H 1.09005 * 109.37879 * 221.67021 * 25 16 14 49 49 H 1.08994 * 109.59968 * 170.04723 * 26 25 16 50 50 H 1.09007 * 109.59484 * 290.50539 * 26 25 16 51 51 H 1.09003 * 109.46897 * 59.99806 * 28 27 11 52 52 H 1.09004 * 109.47176 * 179.97438 * 28 27 11 53 53 H 1.08999 * 109.47215 * 299.99965 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5763 1.1907 0.0005 5 6 4.2266 -0.0341 0.0016 6 6 3.4766 -1.1947 0.0016 7 6 4.1727 -2.5313 0.0021 8 7 4.2913 -3.0211 1.3820 9 6 3.0248 -2.8610 2.1079 10 6 3.2244 -3.2451 3.5758 11 6 3.7001 -4.6987 3.6568 12 6 4.9966 -4.8468 2.8550 13 6 4.7463 -4.4169 1.4077 14 6 2.6474 -5.6048 3.0827 15 8 2.0883 -5.2706 2.0596 16 7 2.3010 -6.7635 3.6526 17 6 1.3542 -7.5396 3.0356 18 1 1.1556 -7.4131 1.9816 19 6 0.6501 -8.4889 3.7663 20 7 0.6446 -8.4359 5.0794 21 14 -0.2885 -9.8405 2.8821 22 1 -0.1237 -9.6793 1.4151 23 1 0.2418 -11.1641 3.2969 24 1 -1.7291 -9.7527 3.2315 25 6 2.8858 -7.2392 4.9031 26 6 4.1935 -6.4974 5.1859 27 7 3.9528 -5.0508 5.0606 28 6 2.8384 -4.6267 5.9186 29 7 2.1587 -1.1462 0.0005 30 1 -0.3634 0.0004 1.0276 31 1 -0.3633 0.8897 -0.5142 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6506 2.1373 -0.0004 34 1 4.1365 2.1140 0.0001 35 1 5.3056 -0.0804 0.0016 36 1 3.5941 -3.2425 -0.5873 37 1 5.1668 -2.4235 -0.4318 38 1 2.6991 -1.8227 2.0452 39 1 2.2674 -3.5066 1.6633 40 1 2.2807 -3.1404 4.1110 41 1 3.9726 -2.5917 4.0244 42 1 5.3199 -5.8876 2.8748 43 1 5.7699 -4.2162 3.2936 44 1 3.9819 -5.0563 0.9660 45 1 5.6703 -4.5082 0.8368 46 1 0.1534 -9.0988 5.5894 47 1 2.1859 -7.0624 5.7199 48 1 3.0857 -8.3079 4.8254 49 1 4.5320 -6.7254 6.1965 50 1 4.9516 -6.8056 4.4658 51 1 1.9220 -5.1197 5.5941 52 1 3.0512 -4.9000 6.9522 53 1 2.7149 -3.5462 5.8462 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096077161.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:53:18 Heat of formation + Delta-G solvation = 28.561661 kcal Electronic energy + Delta-G solvation = -34598.792532 eV Core-core repulsion = 30470.676800 eV Total energy + Delta-G solvation = -4128.115732 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 358.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.35129 -41.29588 -39.00727 -38.01766 -36.60832 -34.50731 -33.68716 -33.40049 -32.32455 -31.94927 -30.11155 -29.12633 -27.79161 -27.14233 -26.32206 -24.48539 -23.60817 -23.15849 -23.11593 -22.55796 -21.48887 -19.57530 -18.55339 -17.91939 -17.36560 -17.33314 -17.14764 -16.82467 -16.61080 -16.24709 -16.10096 -15.84188 -15.64972 -15.48824 -15.01100 -14.94838 -14.69759 -14.21422 -13.99462 -13.95940 -13.72684 -13.54857 -13.48517 -13.28030 -13.24265 -13.17643 -13.01839 -12.89891 -12.77817 -12.66723 -12.44455 -12.35760 -12.30042 -12.23010 -12.10789 -11.88933 -11.66136 -11.28390 -11.04290 -10.68194 -10.51604 -10.25890 -9.77194 -9.69001 -9.32078 -8.95833 -8.29477 -6.03476 0.18255 0.43075 1.28058 1.33230 1.46980 2.00650 2.20135 2.65526 2.75005 3.02267 3.12223 3.18601 3.34170 3.67031 3.74802 3.83875 3.91536 3.93360 4.20041 4.22719 4.26725 4.27119 4.32489 4.43077 4.45164 4.55069 4.57484 4.60273 4.63858 4.68781 4.71698 4.72652 4.73701 4.78232 4.84777 4.87108 4.88082 4.94302 4.98188 5.04108 5.11491 5.17934 5.23607 5.29983 5.34407 5.38965 5.39847 5.51555 5.86091 5.87999 5.96991 6.08494 6.10791 6.14103 6.45699 7.14857 7.17509 7.50926 8.04446 8.61992 Molecular weight = 358.21amu Principal moments of inertia in cm(-1) A = 0.012644 B = 0.003279 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.974148 B = 8537.317141 C = 9510.202636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.101 3.899 3 C -0.173 4.173 4 C -0.071 4.071 5 C -0.160 4.160 6 C 0.117 3.883 7 C 0.104 3.896 8 N -0.511 5.511 9 C 0.055 3.945 10 C -0.080 4.080 11 C 0.111 3.889 12 C -0.081 4.081 13 C 0.056 3.944 14 C 0.419 3.581 15 O -0.617 6.617 16 N -0.451 5.451 17 C -0.346 4.346 18 H 0.065 0.935 19 C 0.001 3.999 20 N -0.892 5.892 21 Si 0.984 3.016 22 H -0.278 1.278 23 H -0.262 1.262 24 H -0.276 1.276 25 C 0.108 3.892 26 C 0.032 3.968 27 N -0.508 5.508 28 C 0.018 3.982 29 N -0.519 5.519 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.056 0.944 33 H 0.163 0.837 34 H 0.171 0.829 35 H 0.159 0.841 36 H 0.020 0.980 37 H 0.119 0.881 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.045 0.955 41 H 0.094 0.906 42 H 0.065 0.935 43 H 0.106 0.894 44 H 0.011 0.989 45 H 0.100 0.900 46 H 0.272 0.728 47 H 0.071 0.929 48 H 0.047 0.953 49 H 0.118 0.882 50 H 0.083 0.917 51 H 0.000 1.000 52 H 0.091 0.909 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.166 16.633 -3.173 19.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.037 4.037 3 C -0.192 4.192 4 C -0.097 4.097 5 C -0.181 4.181 6 C -0.020 4.020 7 C -0.024 4.024 8 N -0.236 5.236 9 C -0.074 4.074 10 C -0.119 4.119 11 C 0.018 3.982 12 C -0.120 4.120 13 C -0.073 4.073 14 C 0.208 3.792 15 O -0.503 6.503 16 N -0.169 5.169 17 C -0.474 4.474 18 H 0.083 0.917 19 C -0.201 4.201 20 N -0.531 5.531 21 Si 0.808 3.192 22 H -0.203 1.203 23 H -0.187 1.187 24 H -0.202 1.202 25 C -0.016 4.016 26 C -0.096 4.096 27 N -0.231 5.231 28 C -0.130 4.130 29 N -0.230 5.230 30 H 0.094 0.906 31 H 0.122 0.878 32 H 0.075 0.925 33 H 0.181 0.819 34 H 0.188 0.812 35 H 0.176 0.824 36 H 0.039 0.961 37 H 0.137 0.863 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.113 0.887 42 H 0.083 0.917 43 H 0.124 0.876 44 H 0.030 0.970 45 H 0.119 0.881 46 H 0.082 0.918 47 H 0.089 0.911 48 H 0.065 0.935 49 H 0.136 0.864 50 H 0.101 0.899 51 H 0.019 0.981 52 H 0.109 0.891 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.137 16.398 -3.062 19.520 hybrid contribution -2.196 -1.542 -0.989 2.860 sum 7.941 14.855 -4.051 17.325 Atomic orbital electron populations 1.20757 0.88273 1.03734 1.03222 1.21713 0.97903 0.88681 0.95373 1.22271 0.95662 0.99238 1.02059 1.22007 0.94386 0.99045 0.94248 1.22167 1.02476 0.92178 1.01236 1.21121 0.89127 0.95943 0.95794 1.21078 1.00063 0.91145 0.90152 1.62328 1.29187 1.19442 1.12604 1.22257 0.91827 0.99882 0.93387 1.21461 1.00402 0.93200 0.96822 1.21199 0.93816 0.94409 0.88787 1.21469 0.95062 1.01726 0.93715 1.22112 0.99921 0.88082 0.97162 1.21306 0.87821 0.82718 0.87365 1.90374 1.58672 1.73099 1.28179 1.43516 1.34908 1.16791 1.21717 1.19591 1.17599 1.15972 0.94265 0.91657 1.25996 0.97355 1.00655 0.96120 1.70070 1.41869 1.35414 1.05753 0.85022 0.77847 0.78205 0.78118 1.20295 1.18686 1.20163 1.21889 0.94839 0.97911 0.86981 1.22866 0.95790 0.86535 1.04453 1.62865 1.40122 1.15000 1.05122 1.22500 0.91358 1.01121 0.98012 1.67388 1.10834 1.31394 1.13406 0.90557 0.87808 0.92541 0.81950 0.81169 0.82363 0.96137 0.86343 0.92344 0.93196 0.93597 0.88734 0.91674 0.87567 0.97049 0.88135 0.91783 0.91107 0.93452 0.86408 0.89864 0.98113 0.89065 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.25 10.17 71.23 0.72 -1.53 16 2 C 0.10 2.65 6.78 42.55 0.29 2.94 16 3 C -0.17 -3.24 9.74 22.36 0.22 -3.02 16 4 C -0.07 -1.20 10.18 22.47 0.23 -0.97 16 5 C -0.16 -3.35 9.72 22.36 0.22 -3.13 16 6 C 0.12 3.38 4.91 42.54 0.21 3.59 16 7 C 0.10 3.10 5.59 85.56 0.48 3.58 16 8 N -0.51 -16.87 4.80 -900.95 -4.32 -21.20 16 9 C 0.05 2.15 4.44 86.33 0.38 2.53 16 10 C -0.08 -2.99 4.04 30.66 0.12 -2.87 16 11 C 0.11 4.31 0.44 2.76 0.00 4.31 16 12 C -0.08 -2.69 4.83 30.66 0.15 -2.54 16 13 C 0.06 1.90 5.17 86.33 0.45 2.35 16 14 C 0.42 21.29 5.37 87.70 0.47 21.76 16 15 O -0.62 -35.81 11.01 -3.06 -0.03 -35.84 16 16 N -0.45 -24.14 2.79 -638.77 -1.78 -25.92 16 17 C -0.35 -20.56 9.13 84.04 0.77 -19.79 16 18 H 0.07 4.23 7.25 -2.91 -0.02 4.21 16 19 C 0.00 0.03 5.04 84.93 0.43 0.46 16 20 N -0.89 -48.41 10.57 21.66 0.23 -48.18 16 21 Si 0.98 44.24 29.58 68.60 2.03 46.27 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 23 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 24 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 25 C 0.11 4.95 3.98 86.47 0.34 5.29 16 26 C 0.03 1.10 5.96 86.24 0.51 1.61 16 27 N -0.51 -17.56 4.89 -876.21 -4.28 -21.85 16 28 C 0.02 0.63 8.08 127.69 1.03 1.66 16 29 N -0.52 -17.14 8.58 -172.08 -1.48 -18.61 16 30 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.10 1.51 8.08 -2.39 -0.02 1.49 16 32 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 34 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 35 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 36 H 0.02 0.74 8.08 -2.39 -0.02 0.72 16 37 H 0.12 2.65 8.04 -2.39 -0.02 2.63 16 38 H 0.06 2.27 5.76 -2.39 -0.01 2.26 16 39 H 0.05 2.52 5.03 -2.42 -0.01 2.50 16 40 H 0.05 1.83 6.49 -2.39 -0.02 1.81 16 41 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 42 H 0.06 2.15 6.57 -2.39 -0.02 2.13 16 43 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 44 H 0.01 0.50 6.21 -2.39 -0.01 0.48 16 45 H 0.10 2.72 8.12 -2.39 -0.02 2.70 16 46 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 47 H 0.07 3.50 5.61 -2.39 -0.01 3.49 16 48 H 0.05 2.28 7.63 -2.38 -0.02 2.26 16 49 H 0.12 3.30 8.14 -2.39 -0.02 3.28 16 50 H 0.08 2.73 6.28 -2.38 -0.01 2.71 16 51 H 0.00 0.01 5.96 -2.39 -0.01 -0.01 16 52 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 53 H 0.08 2.51 6.25 -2.39 -0.01 2.50 16 Total: -1.00 -75.53 389.78 -1.70 -77.22 By element: Atomic # 1 Polarization: 30.96 SS G_CDS: 0.92 Total: 31.88 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: 7.02 Total: 16.23 kcal Atomic # 7 Polarization: -124.12 SS G_CDS: -11.63 Total: -135.76 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -0.03 Total: -35.84 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -75.53 -1.70 -77.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096077161.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.785 kcal (2) G-P(sol) polarization free energy of solvation -75.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds