Wall clock time and date at job start Fri Apr 10 2020 14:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86807 * 119.99481 * 2 1 4 4 H 1.48498 * 109.47053 * 274.97957 * 3 2 1 5 5 H 1.48491 * 109.47049 * 34.98670 * 3 2 1 6 6 H 1.48498 * 109.46648 * 154.98822 * 3 2 1 7 7 C 1.39897 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99874 * 147.61689 * 7 2 1 9 9 C 1.41146 * 120.00433 * 327.61796 * 7 2 1 10 10 C 1.40867 * 120.16638 * 157.95157 * 9 7 2 11 11 C 1.36378 * 119.83117 * 180.02562 * 10 9 7 12 12 C 1.39488 * 120.16578 * 359.97438 * 11 10 9 13 13 N 1.39238 * 119.83239 * 179.97438 * 12 11 10 14 14 C 1.34779 * 119.99745 * 37.76279 * 13 12 11 15 15 O 1.21277 * 120.00074 * 356.69766 * 14 13 12 16 16 C 1.50700 * 119.99744 * 176.69710 * 14 13 12 17 17 S 1.81396 * 109.47282 * 180.02562 * 16 14 13 18 18 C 1.76195 * 103.00281 * 180.02562 * 17 16 14 19 19 N 1.31226 * 126.42412 * 359.95429 * 18 17 16 20 20 N 1.28660 * 109.98363 * 180.02562 * 19 18 17 21 21 C 1.31090 * 109.93766 * 0.02562 * 20 19 18 22 22 N 1.37771 * 146.41654 * 179.97438 * 21 20 19 23 23 N 1.36600 * 126.02151 * 0.06382 * 22 21 20 24 24 C 1.36987 * 107.96018 * 180.02562 * 22 21 20 25 25 N 1.29512 * 109.43062 * 0.02562 * 24 22 21 26 26 N 1.36482 * 126.42579 * 180.02562 * 18 17 16 27 27 C 1.39483 * 120.33161 * 0.25978 * 12 11 10 28 28 C 1.36370 * 120.16879 * 359.47895 * 27 12 11 29 29 H 0.96996 * 120.00072 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.08780 * 359.97438 * 10 9 7 31 31 H 1.07993 * 119.92054 * 179.97438 * 11 10 9 32 32 H 0.96996 * 119.99744 * 217.75680 * 13 12 11 33 33 H 1.09004 * 109.47341 * 59.99712 * 16 14 13 34 34 H 1.08997 * 109.47144 * 300.00149 * 16 14 13 35 35 H 1.00896 * 111.00327 * 269.99827 * 23 22 21 36 36 H 1.00900 * 111.00112 * 33.95918 * 23 22 21 37 37 H 1.08000 * 125.28669 * 180.26201 * 24 22 21 38 38 H 1.08001 * 119.91440 * 179.74622 * 27 12 11 39 39 H 1.08008 * 120.08623 * 180.26187 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2426 1.6179 0.0000 4 1 2.3848 2.1073 -1.3948 5 1 1.4967 2.6200 0.8027 6 1 3.5889 1.4122 0.5920 7 6 2.0082 -1.2115 0.0005 8 1 2.9623 -1.2845 -0.5004 9 6 1.4672 -2.3386 0.6557 10 6 1.8854 -3.6348 0.2961 11 6 1.3578 -4.7191 0.9333 12 6 0.4067 -4.5469 1.9390 13 7 -0.1279 -5.6587 2.5845 14 6 0.6572 -6.7183 2.8631 15 8 1.8138 -6.7285 2.4985 16 6 0.0977 -7.8903 3.6274 17 16 1.3901 -9.1449 3.8421 18 6 0.5638 -10.4158 4.7401 19 7 -0.6879 -10.4038 5.1340 20 7 -0.9609 -11.4916 5.7645 21 6 0.1001 -12.2601 5.8101 22 7 0.6335 -13.4562 6.2380 23 7 -0.0284 -14.4277 6.9338 24 6 1.9441 -13.5000 5.8421 25 7 2.2383 -12.4115 5.2049 26 7 1.1058 -11.5967 5.1577 27 6 -0.0159 -3.2668 2.2971 28 6 0.5066 -2.1728 1.6726 29 1 -0.4850 0.8400 -0.0004 30 1 2.6214 -3.7698 -0.4826 31 1 1.6770 -5.7135 0.6585 32 1 -1.0652 -5.6707 2.8338 33 1 -0.7376 -8.3197 3.0741 34 1 -0.2484 -7.5548 4.6050 35 1 0.0542 -14.2801 7.9284 36 1 -0.9967 -14.4765 6.6545 37 1 2.6253 -14.3170 6.0287 38 1 -0.7557 -3.1414 3.0739 39 1 0.1815 -1.1820 1.9539 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004690285.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:53:34 Heat of formation + Delta-G solvation = 198.288662 kcal Electronic energy + Delta-G solvation = -26822.993698 eV Core-core repulsion = 22704.358309 eV Total energy + Delta-G solvation = -4118.635389 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 359.091 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.30898 -40.64799 -39.67202 -37.27842 -36.68222 -34.53387 -33.12672 -32.21685 -31.23480 -30.45044 -29.56089 -29.36192 -28.52479 -24.85516 -24.36331 -23.50280 -22.30240 -21.79829 -20.84409 -19.85969 -19.06540 -18.47561 -18.15410 -17.43922 -17.11570 -16.69970 -16.54125 -16.30189 -16.16488 -15.40318 -15.23587 -14.14252 -14.03041 -14.00096 -13.71386 -13.42303 -13.04706 -12.73323 -12.60958 -12.51863 -12.11062 -11.99685 -11.91373 -11.47132 -11.43661 -11.16296 -10.99127 -10.97246 -10.57997 -10.52990 -10.46486 -10.22428 -9.78800 -9.58467 -9.55776 -9.14236 -8.74658 -7.69522 -7.57122 -7.18663 -6.91533 -4.29837 0.32448 0.86450 0.88902 1.30679 1.84308 1.89608 2.20866 2.49172 2.90171 2.94278 3.04395 3.07946 3.10633 3.28202 3.62571 3.73335 3.87867 4.13435 4.47382 4.63713 4.78081 4.91280 4.93297 5.12423 5.22620 5.35024 5.65425 5.71676 6.17205 6.39949 6.57498 6.71737 6.84166 6.90606 6.97614 7.10338 7.25224 7.53373 7.62834 7.83094 7.94757 7.99635 8.19395 8.23504 8.51315 8.64134 8.81675 8.95829 9.99523 Molecular weight = 359.09amu Principal moments of inertia in cm(-1) A = 0.042090 B = 0.001554 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.075425 B =18008.959740 C =18432.475839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.896 3.104 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.464 4.464 8 H 0.083 0.917 9 C 0.114 3.886 10 C -0.224 4.224 11 C -0.063 4.063 12 C -0.027 4.027 13 N -0.637 5.637 14 C 0.518 3.482 15 O -0.519 6.519 16 C -0.149 4.149 17 S 0.106 5.894 18 C 0.185 3.815 19 N -0.253 5.253 20 N -0.269 5.269 21 C 0.293 3.707 22 N -0.342 5.342 23 N -0.561 5.561 24 C 0.337 3.663 25 N -0.273 5.273 26 N -0.326 5.326 27 C -0.098 4.098 28 C -0.172 4.172 29 H 0.284 0.716 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.398 0.602 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.362 0.638 36 H 0.382 0.618 37 H 0.256 0.744 38 H 0.090 0.910 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.897 -24.727 13.861 28.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.134 4.134 3 Si 0.720 3.280 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.180 1.180 7 C -0.491 4.491 8 H 0.101 0.899 9 C 0.111 3.889 10 C -0.244 4.244 11 C -0.083 4.083 12 C -0.119 4.119 13 N -0.280 5.280 14 C 0.301 3.699 15 O -0.396 6.396 16 C -0.301 4.301 17 S 0.332 5.668 18 C -0.190 4.190 19 N -0.099 5.099 20 N -0.121 5.121 21 C -0.067 4.067 22 N -0.140 5.140 23 N -0.190 5.190 24 C 0.041 3.959 25 N -0.096 5.096 26 N -0.110 5.110 27 C -0.118 4.118 28 C -0.191 4.191 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.121 0.879 32 H 0.232 0.768 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.179 0.821 36 H 0.200 0.800 37 H 0.271 0.729 38 H 0.108 0.892 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.425 -24.070 12.622 27.182 hybrid contribution -1.666 0.379 1.361 2.184 sum -2.090 -23.691 13.983 27.589 Atomic orbital electron populations 1.69943 1.08099 1.29950 1.31033 1.25952 0.94368 1.01566 0.91502 0.86499 0.81544 0.80760 0.79239 1.19426 1.19865 1.18048 1.19531 1.05389 0.93768 1.30416 0.89923 1.17613 0.89623 0.91879 0.89812 1.20594 1.07092 0.92273 1.04427 1.20309 0.96202 0.98096 0.93701 1.17015 1.07882 0.84548 1.02451 1.42742 1.12043 1.15612 1.57593 1.19384 0.86423 0.83326 0.80723 1.90747 1.16938 1.79418 1.52517 1.23801 1.02525 0.97280 1.06488 1.86599 1.10270 1.06420 1.63483 1.26422 0.93541 0.90883 1.08136 1.74908 1.08147 1.13400 1.13406 1.74362 1.17404 0.99186 1.21168 1.23444 0.90072 0.90506 1.02654 1.42664 1.09973 1.10212 1.51144 1.60100 1.21505 1.28035 1.09371 1.26575 0.82031 0.97007 0.90318 1.77126 1.05935 1.01115 1.25431 1.47367 1.08993 1.13834 1.40816 1.20161 1.00567 0.91481 0.99616 1.20617 1.02579 0.96646 0.99286 0.90536 0.88654 0.87855 0.76826 0.85870 0.85837 0.82108 0.80044 0.72859 0.89152 0.87441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.20 11.78 55.55 0.65 -18.54 16 2 C 0.09 2.16 4.77 -17.34 -0.08 2.08 16 3 Si 0.90 18.08 29.66 -169.99 -5.04 13.04 16 4 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.46 -12.17 8.94 -37.86 -0.34 -12.51 16 8 H 0.08 2.10 8.02 -52.49 -0.42 1.68 16 9 C 0.11 3.02 5.57 -106.80 -0.60 2.42 16 10 C -0.22 -5.67 9.74 -39.26 -0.38 -6.06 16 11 C -0.06 -1.51 8.59 -39.79 -0.34 -1.85 16 12 C -0.03 -0.59 6.25 -83.57 -0.52 -1.12 16 13 N -0.64 -10.94 5.30 -9.74 -0.05 -10.99 16 14 C 0.52 8.77 7.66 -10.98 -0.08 8.69 16 15 O -0.52 -10.86 13.48 5.56 0.07 -10.78 16 16 C -0.15 -1.89 6.09 36.01 0.22 -1.67 16 17 S 0.11 1.49 21.30 -107.50 -2.29 -0.80 16 18 C 0.18 2.58 8.43 -88.44 -0.75 1.84 16 19 N -0.25 -3.64 11.82 30.66 0.36 -3.27 16 20 N -0.27 -3.61 12.22 30.24 0.37 -3.24 16 21 C 0.29 3.27 9.53 -319.42 -3.04 0.23 16 22 N -0.34 -2.16 3.79 -14.34 -0.05 -2.22 16 23 N -0.56 -1.40 10.42 60.35 0.63 -0.78 16 24 C 0.34 1.72 12.86 -89.38 -1.15 0.57 16 25 N -0.27 -2.71 12.58 29.81 0.38 -2.34 16 26 N -0.33 -4.14 4.83 -13.31 -0.06 -4.20 16 27 C -0.10 -2.21 9.90 -39.79 -0.39 -2.61 16 28 C -0.17 -4.34 8.74 -39.26 -0.34 -4.68 16 29 H 0.28 6.37 8.30 -40.82 -0.34 6.04 16 30 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 31 H 0.10 2.42 6.45 -52.49 -0.34 2.09 16 32 H 0.40 5.31 8.82 -40.82 -0.36 4.95 16 33 H 0.12 1.33 8.14 -51.92 -0.42 0.91 16 34 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.36 0.16 9.21 -181.37 -1.67 -1.51 16 36 H 0.38 0.81 9.07 -181.37 -1.65 -0.84 16 37 H 0.26 -0.24 8.06 -52.49 -0.42 -0.66 16 38 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.11 2.75 6.53 -52.48 -0.34 2.41 16 LS Contribution 362.42 15.07 5.46 5.46 Total: -1.00 -35.44 362.42 -13.40 -48.85 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.02 Total: 4.49 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -7.80 Total: -14.67 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 2.22 Total: -45.58 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.07 Total: -10.78 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.04 Total: 13.04 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -2.29 Total: -0.80 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.44 -13.40 -48.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004690285.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 247.136 kcal (2) G-P(sol) polarization free energy of solvation -35.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 211.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 198.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds