Wall clock time and date at job start Fri Apr 10 2020 14:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86807 * 119.99481 * 2 1 4 4 H 1.48498 * 109.47053 * 274.97957 * 3 2 1 5 5 H 1.48491 * 109.47049 * 34.98670 * 3 2 1 6 6 H 1.48498 * 109.46648 * 154.98822 * 3 2 1 7 7 C 1.39897 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99874 * 147.61689 * 7 2 1 9 9 C 1.41146 * 120.00433 * 327.61796 * 7 2 1 10 10 C 1.40867 * 120.16638 * 157.95157 * 9 7 2 11 11 C 1.36378 * 119.83117 * 180.02562 * 10 9 7 12 12 C 1.39488 * 120.16578 * 359.97438 * 11 10 9 13 13 N 1.39238 * 119.83239 * 179.97438 * 12 11 10 14 14 C 1.34779 * 119.99745 * 37.76279 * 13 12 11 15 15 O 1.21277 * 120.00074 * 356.69766 * 14 13 12 16 16 C 1.50700 * 119.99744 * 176.69710 * 14 13 12 17 17 S 1.81396 * 109.47282 * 180.02562 * 16 14 13 18 18 C 1.76195 * 103.00281 * 180.02562 * 17 16 14 19 19 N 1.31226 * 126.42412 * 359.95429 * 18 17 16 20 20 N 1.28660 * 109.98363 * 180.02562 * 19 18 17 21 21 C 1.31090 * 109.93766 * 0.02562 * 20 19 18 22 22 N 1.37771 * 146.41654 * 179.97438 * 21 20 19 23 23 N 1.36600 * 126.02151 * 0.06382 * 22 21 20 24 24 C 1.36987 * 107.96018 * 180.02562 * 22 21 20 25 25 N 1.29512 * 109.43062 * 0.02562 * 24 22 21 26 26 N 1.36482 * 126.42579 * 180.02562 * 18 17 16 27 27 C 1.39483 * 120.33161 * 0.25978 * 12 11 10 28 28 C 1.36370 * 120.16879 * 359.47895 * 27 12 11 29 29 H 0.96996 * 120.00072 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.08780 * 359.97438 * 10 9 7 31 31 H 1.07993 * 119.92054 * 179.97438 * 11 10 9 32 32 H 0.96996 * 119.99744 * 217.75680 * 13 12 11 33 33 H 1.09004 * 109.47341 * 59.99712 * 16 14 13 34 34 H 1.08997 * 109.47144 * 300.00149 * 16 14 13 35 35 H 1.00896 * 111.00327 * 269.99827 * 23 22 21 36 36 H 1.00900 * 111.00112 * 33.95918 * 23 22 21 37 37 H 1.08000 * 125.28669 * 180.26201 * 24 22 21 38 38 H 1.08001 * 119.91440 * 179.74622 * 27 12 11 39 39 H 1.08008 * 120.08623 * 180.26187 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2426 1.6179 0.0000 4 1 2.3848 2.1073 -1.3948 5 1 1.4967 2.6200 0.8027 6 1 3.5889 1.4122 0.5920 7 6 2.0082 -1.2115 0.0005 8 1 2.9623 -1.2845 -0.5004 9 6 1.4672 -2.3386 0.6557 10 6 1.8854 -3.6348 0.2961 11 6 1.3578 -4.7191 0.9333 12 6 0.4067 -4.5469 1.9390 13 7 -0.1279 -5.6587 2.5845 14 6 0.6572 -6.7183 2.8631 15 8 1.8138 -6.7285 2.4985 16 6 0.0977 -7.8903 3.6274 17 16 1.3901 -9.1449 3.8421 18 6 0.5638 -10.4158 4.7401 19 7 -0.6879 -10.4038 5.1340 20 7 -0.9609 -11.4916 5.7645 21 6 0.1001 -12.2601 5.8101 22 7 0.6335 -13.4562 6.2380 23 7 -0.0284 -14.4277 6.9338 24 6 1.9441 -13.5000 5.8421 25 7 2.2383 -12.4115 5.2049 26 7 1.1058 -11.5967 5.1577 27 6 -0.0159 -3.2668 2.2971 28 6 0.5066 -2.1728 1.6726 29 1 -0.4850 0.8400 -0.0004 30 1 2.6214 -3.7698 -0.4826 31 1 1.6770 -5.7135 0.6585 32 1 -1.0652 -5.6707 2.8338 33 1 -0.7376 -8.3197 3.0741 34 1 -0.2484 -7.5548 4.6050 35 1 0.0542 -14.2801 7.9284 36 1 -0.9967 -14.4765 6.6545 37 1 2.6253 -14.3170 6.0287 38 1 -0.7557 -3.1414 3.0739 39 1 0.1815 -1.1820 1.9539 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004690285.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:53:33 Heat of formation + Delta-G solvation = 177.625849 kcal Electronic energy + Delta-G solvation = -26823.889705 eV Core-core repulsion = 22704.358309 eV Total energy + Delta-G solvation = -4119.531396 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 359.091 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.09569 -41.34091 -41.21358 -39.06983 -37.20754 -36.24156 -34.86194 -32.95344 -32.19732 -31.70841 -31.42188 -30.26255 -29.86232 -26.64604 -25.05759 -24.34581 -23.53827 -23.01841 -22.63345 -21.40062 -19.82817 -19.30550 -19.12641 -18.84480 -18.42942 -17.98767 -17.38109 -17.26223 -17.02685 -16.71504 -16.62265 -15.79400 -15.34352 -15.15960 -15.05099 -14.69808 -14.39918 -14.06310 -13.91914 -13.84781 -13.74997 -13.30080 -13.20127 -12.83619 -12.72529 -12.68896 -12.36643 -12.31419 -11.93332 -11.59898 -11.54442 -11.45898 -11.26707 -11.21735 -10.88711 -10.51878 -10.28969 -9.47780 -9.03566 -8.74691 -8.67258 -6.23990 -0.54020 0.08968 0.17629 0.62106 0.78507 0.85607 1.14496 1.25137 1.33976 1.36129 1.41348 1.53963 1.69028 2.20114 2.24718 2.40875 2.63800 3.15515 3.59443 3.71660 3.76558 3.89991 3.95763 4.22318 4.26561 4.40054 4.44231 4.49739 4.72725 4.90466 5.10152 5.14855 5.26402 5.42158 5.54206 5.64127 5.85223 6.00463 6.05130 6.07553 6.26977 6.34857 6.58174 6.64491 6.88921 6.97388 7.05321 7.28320 8.19996 Molecular weight = 359.09amu Principal moments of inertia in cm(-1) A = 0.042090 B = 0.001554 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.075425 B =18008.959740 C =18432.475839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.053 3.947 3 Si 0.971 3.029 4 H -0.259 1.259 5 H -0.260 1.260 6 H -0.262 1.262 7 C -0.504 4.504 8 H 0.075 0.925 9 C 0.084 3.916 10 C -0.245 4.245 11 C -0.074 4.074 12 C -0.011 4.011 13 N -0.630 5.630 14 C 0.521 3.479 15 O -0.560 6.560 16 C -0.130 4.130 17 S 0.074 5.926 18 C 0.170 3.830 19 N -0.267 5.267 20 N -0.297 5.297 21 C 0.292 3.708 22 N -0.334 5.334 23 N -0.545 5.545 24 C 0.368 3.632 25 N -0.319 5.319 26 N -0.338 5.338 27 C -0.096 4.096 28 C -0.190 4.190 29 H 0.295 0.705 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.420 0.580 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.378 0.622 36 H 0.387 0.613 37 H 0.315 0.685 38 H 0.126 0.874 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.566 -26.710 15.933 31.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.167 4.167 3 Si 0.791 3.209 4 H -0.184 1.184 5 H -0.184 1.184 6 H -0.186 1.186 7 C -0.532 4.532 8 H 0.093 0.907 9 C 0.081 3.919 10 C -0.265 4.265 11 C -0.094 4.094 12 C -0.104 4.104 13 N -0.275 5.275 14 C 0.307 3.693 15 O -0.439 6.439 16 C -0.282 4.282 17 S 0.301 5.699 18 C -0.206 4.206 19 N -0.112 5.112 20 N -0.150 5.150 21 C -0.068 4.068 22 N -0.130 5.130 23 N -0.176 5.176 24 C 0.073 3.927 25 N -0.144 5.144 26 N -0.121 5.121 27 C -0.116 4.116 28 C -0.210 4.210 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.122 0.878 32 H 0.258 0.742 33 H 0.166 0.834 34 H 0.165 0.835 35 H 0.197 0.803 36 H 0.205 0.795 37 H 0.329 0.671 38 H 0.144 0.856 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.139 -26.109 14.730 29.999 hybrid contribution -1.489 0.625 0.854 1.827 sum -2.628 -25.483 15.584 29.986 Atomic orbital electron populations 1.69936 1.09355 1.31520 1.31169 1.26715 0.95075 1.04405 0.90490 0.85377 0.79642 0.76185 0.79684 1.18401 1.18437 1.18597 1.19725 1.05778 0.95354 1.32310 0.90694 1.17931 0.90717 0.92410 0.90830 1.20715 1.07888 0.92744 1.05164 1.20430 0.96958 0.97598 0.94434 1.17056 1.06236 0.86011 1.01124 1.42612 1.13305 1.14409 1.57189 1.19966 0.85747 0.83739 0.79805 1.90741 1.18938 1.80271 1.53943 1.23634 1.02207 0.95098 1.07233 1.86663 1.11453 1.07520 1.64293 1.26147 0.93739 0.91566 1.09124 1.74802 1.08489 1.14213 1.13722 1.74212 1.18665 0.99676 1.22400 1.23919 0.89313 0.91797 1.01818 1.43137 1.10291 1.08874 1.50683 1.60320 1.21968 1.24929 1.10370 1.27786 0.81648 0.96426 0.86840 1.77152 1.05846 1.02717 1.28671 1.47500 1.10150 1.13782 1.40671 1.20445 1.00615 0.90816 0.99700 1.20645 1.03268 0.97214 0.99835 0.89421 0.89015 0.87821 0.74188 0.83435 0.83475 0.80345 0.79501 0.67067 0.85647 0.88318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.40 11.78 21.82 0.26 -40.15 16 2 C 0.05 2.64 4.77 85.24 0.41 3.04 16 3 Si 0.97 37.45 29.66 68.60 2.03 39.48 16 4 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 5 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 6 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 7 C -0.50 -27.61 8.94 23.39 0.21 -27.40 16 8 H 0.07 4.04 8.02 -2.91 -0.02 4.01 16 9 C 0.08 4.63 5.57 -21.28 -0.12 4.52 16 10 C -0.25 -13.00 9.74 22.48 0.22 -12.78 16 11 C -0.07 -3.63 8.59 22.14 0.19 -3.44 16 12 C -0.01 -0.48 6.25 38.57 0.24 -0.24 16 13 N -0.63 -20.59 5.30 -303.10 -1.61 -22.20 16 14 C 0.52 17.14 7.66 87.66 0.67 17.81 16 15 O -0.56 -23.53 13.48 -3.02 -0.04 -23.57 16 16 C -0.13 -3.12 6.09 71.24 0.43 -2.68 16 17 S 0.07 2.09 21.30 -56.49 -1.20 0.89 16 18 C 0.17 4.70 8.43 179.59 1.51 6.22 16 19 N -0.27 -7.51 11.82 -56.92 -0.67 -8.18 16 20 N -0.30 -7.74 12.22 -58.25 -0.71 -8.45 16 21 C 0.29 6.10 9.53 260.30 2.48 8.58 16 22 N -0.33 -3.24 3.79 -199.29 -0.76 -4.00 16 23 N -0.54 -0.86 10.42 37.02 0.39 -0.47 16 24 C 0.37 2.51 12.86 179.92 2.31 4.82 16 25 N -0.32 -5.84 12.58 -59.59 -0.75 -6.59 16 26 N -0.34 -8.31 4.83 -196.02 -0.95 -9.26 16 27 C -0.10 -4.26 9.90 22.13 0.22 -4.04 16 28 C -0.19 -9.79 8.74 22.48 0.20 -9.59 16 29 H 0.29 13.25 8.30 -92.71 -0.77 12.48 16 30 H 0.09 4.73 8.06 -2.91 -0.02 4.71 16 31 H 0.10 5.00 6.45 -2.91 -0.02 4.98 16 32 H 0.42 10.06 8.82 -92.71 -0.82 9.25 16 33 H 0.15 2.86 8.14 -2.39 -0.02 2.85 16 34 H 0.15 2.88 8.14 -2.39 -0.02 2.86 16 35 H 0.38 -1.03 9.21 -210.56 -1.94 -2.97 16 36 H 0.39 0.52 9.07 -210.56 -1.91 -1.39 16 37 H 0.31 -2.29 8.06 -2.91 -0.02 -2.31 16 38 H 0.13 4.61 8.06 -2.91 -0.02 4.58 16 39 H 0.10 5.17 6.53 -2.91 -0.02 5.16 16 Total: -1.00 -81.99 362.42 1.48 -80.51 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -3.49 Total: 17.17 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: 8.98 Total: -15.19 kcal Atomic # 7 Polarization: -94.50 SS G_CDS: -4.80 Total: -99.29 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.04 Total: -23.57 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 2.03 Total: 39.48 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -1.20 Total: 0.89 kcal Total: -81.99 1.48 -80.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004690285.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 258.134 kcal (2) G-P(sol) polarization free energy of solvation -81.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds