Wall clock time and date at job start Fri Apr 10 2020 14:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99891 * 2 1 4 4 H 1.48500 * 109.46805 * 240.00088 * 3 2 1 5 5 H 1.48502 * 109.47198 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47299 * 119.99968 * 3 2 1 7 7 C 1.37877 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99968 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99934 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46897 * 179.97438 * 9 7 2 11 11 C 1.39672 * 120.00064 * 274.99604 * 10 9 7 12 12 C 1.38912 * 120.07485 * 299.65002 * 11 10 9 13 13 C 1.38109 * 119.92219 * 179.76379 * 12 11 10 14 14 C 1.38281 * 120.07472 * 0.51236 * 13 12 11 15 15 C 1.38286 * 120.15418 * 359.74383 * 14 13 12 16 16 C 1.38108 * 120.06977 * 359.97438 * 15 14 13 17 17 S 1.65602 * 120.00227 * 94.99680 * 10 9 7 18 18 O 1.42106 * 106.39925 * 330.86935 * 17 10 9 19 19 O 1.42091 * 106.40397 * 197.94355 * 17 10 9 20 20 C 1.76201 * 107.21598 * 84.40501 * 17 10 9 21 21 C 1.38289 * 120.11614 * 270.27751 * 20 17 10 22 22 C 1.37934 * 120.35028 * 180.08570 * 21 20 17 23 23 C 1.39288 * 120.23927 * 359.57520 * 22 21 20 24 24 C 1.38885 * 118.87565 * 0.42297 * 23 22 21 25 25 C 1.37736 * 120.78672 * 359.63322 * 24 23 22 26 26 C 1.51647 * 107.04076 * 179.45000 * 24 23 22 27 27 C 1.54712 * 101.91449 * 344.49795 * 26 24 23 28 28 O 1.36139 * 129.88402 * 180.84174 * 23 22 21 29 29 H 0.96995 * 119.99978 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47017 * 59.99807 * 9 7 2 31 31 H 1.08995 * 109.46737 * 299.99337 * 9 7 2 32 32 H 1.08001 * 120.03697 * 0.02562 * 12 11 10 33 33 H 1.08003 * 119.95955 * 180.24700 * 13 12 11 34 34 H 1.08002 * 119.92412 * 179.72014 * 14 13 12 35 35 H 1.07999 * 119.96568 * 180.02562 * 15 14 13 36 36 H 1.08005 * 120.03612 * 179.97438 * 16 15 14 37 37 H 1.07996 * 119.82395 * 359.82230 * 21 20 17 38 38 H 1.07999 * 119.87810 * 179.86177 * 22 21 20 39 39 H 1.08003 * 120.01403 * 180.33011 * 25 24 23 40 40 H 1.08999 * 110.93866 * 226.34420 * 26 24 23 41 41 H 1.08995 * 110.97082 * 102.66329 * 26 24 23 42 42 H 1.08995 * 110.74542 * 266.98159 * 27 26 24 43 43 H 1.09000 * 110.74261 * 143.63562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.7370 -4.0750 -1.2045 12 6 1.8971 -4.5735 -2.1922 13 6 2.4280 -5.0254 -3.3845 14 6 3.7948 -4.9917 -3.5913 15 6 4.6343 -4.5010 -2.6081 16 6 4.1096 -4.0422 -1.4158 17 16 2.6463 -4.3232 1.4292 18 8 2.5466 -3.3156 2.4263 19 8 3.8444 -5.0404 1.1660 20 6 1.4198 -5.5280 1.8150 21 6 0.3128 -5.1757 2.5652 22 6 -0.6494 -6.1154 2.8715 23 6 -0.5184 -7.4264 2.4197 24 6 0.5977 -7.7682 1.6672 25 6 1.5579 -6.8285 1.3635 26 6 0.4748 -9.2425 1.3343 27 6 -0.6133 -9.7056 2.3318 28 8 -1.3446 -8.4950 2.5898 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6242 -2.5567 0.8903 32 1 0.8298 -4.6038 -2.0297 33 1 1.7752 -5.4093 -4.1544 34 1 4.2077 -5.3499 -4.5228 35 1 5.7013 -4.4758 -2.7730 36 1 4.7658 -3.6595 -0.6480 37 1 0.2032 -4.1604 2.9168 38 1 -1.5097 -5.8324 3.4598 39 1 2.4183 -7.1067 0.7729 40 1 1.4156 -9.7624 1.5150 41 1 0.1453 -9.3839 0.3050 42 1 -0.1609 -10.0861 3.2475 43 1 -1.2588 -10.4572 1.8774 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108759920.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:53:37 Heat of formation + Delta-G solvation = -39.774288 kcal Electronic energy + Delta-G solvation = -30076.539953 eV Core-core repulsion = 25986.536221 eV Total energy + Delta-G solvation = -4090.003732 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 359.102 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.30303 -39.00266 -37.59909 -36.70919 -35.40955 -35.26365 -32.92812 -32.56599 -30.57679 -30.39970 -29.44811 -29.29171 -26.67024 -23.97923 -23.06357 -22.76702 -22.21550 -22.00875 -21.36652 -18.74075 -17.68383 -17.63732 -17.09417 -16.84400 -16.38293 -16.20912 -16.18783 -15.49920 -14.69434 -14.50064 -14.31055 -14.19521 -14.00920 -13.49299 -13.43518 -13.26342 -13.12034 -12.97299 -12.84988 -12.57125 -12.37978 -12.06703 -11.92056 -11.53503 -11.53079 -11.35635 -11.27276 -11.14779 -11.08023 -10.97329 -10.77813 -10.65269 -10.46219 -10.09056 -9.94441 -9.06392 -8.85074 -8.59448 -8.53122 -8.45652 -7.78727 -6.08913 -4.12664 0.65664 0.96885 1.19720 1.79174 1.81956 2.92287 3.26654 3.34769 3.37409 3.42305 3.63997 4.11127 4.17300 4.21283 4.30887 4.44271 4.62634 4.69480 4.82334 5.03256 5.16706 5.20198 5.26086 5.29399 5.32605 5.39912 5.44476 5.46977 5.50399 5.69817 5.79665 5.84315 5.91730 5.97698 6.11514 6.14157 6.31580 6.39009 6.44257 6.74598 6.87253 6.92149 6.94781 7.11097 7.22432 7.27079 7.71576 7.88386 8.12572 8.88336 9.52214 10.99777 Molecular weight = 359.10amu Principal moments of inertia in cm(-1) A = 0.010018 B = 0.004120 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2794.191138 B = 6794.926256 C = 8305.042897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.065 3.935 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.062 0.938 9 C 0.256 3.744 10 N -0.938 5.938 11 C 0.173 3.827 12 C -0.121 4.121 13 C -0.115 4.115 14 C -0.134 4.134 15 C -0.111 4.111 16 C -0.107 4.107 17 S 2.685 3.315 18 O -0.934 6.934 19 O -0.966 6.966 20 C -0.700 4.700 21 C 0.021 3.979 22 C -0.158 4.158 23 C 0.153 3.847 24 C -0.202 4.202 25 C 0.032 3.968 26 C -0.108 4.108 27 C 0.050 3.950 28 O -0.302 6.302 29 H 0.265 0.735 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.154 0.846 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.460 -18.671 -0.663 18.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.138 4.138 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.080 0.920 9 C 0.136 3.864 10 N -0.770 5.770 11 C 0.078 3.922 12 C -0.143 4.143 13 C -0.134 4.134 14 C -0.153 4.153 15 C -0.130 4.130 16 C -0.128 4.128 17 S 2.777 3.223 18 O -0.924 6.924 19 O -0.956 6.956 20 C -0.786 4.786 21 C 0.002 3.998 22 C -0.178 4.178 23 C 0.107 3.893 24 C -0.204 4.204 25 C 0.013 3.987 26 C -0.145 4.145 27 C -0.025 4.025 28 O -0.215 6.215 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.142 0.858 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.171 0.829 38 H 0.156 0.844 39 H 0.158 0.842 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.098 0.902 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.719 -18.354 -0.004 18.368 hybrid contribution -0.281 0.518 -0.191 0.619 sum 0.437 -17.836 -0.195 17.843 Atomic orbital electron populations 1.69901 1.05964 1.27325 1.50292 1.24886 0.94892 0.99209 0.94776 0.86561 0.79623 0.82473 0.78890 1.20122 1.21157 1.19868 1.21356 0.93683 0.90216 1.51309 0.91969 1.19290 0.86713 0.81550 0.98869 1.55464 1.59404 1.44049 1.18074 1.17328 0.91579 0.95933 0.87328 1.21268 1.00017 0.98931 0.94052 1.20917 0.95162 1.00569 0.96757 1.21035 0.93670 1.01567 0.99012 1.20932 0.99535 0.99198 0.93336 1.21380 0.94422 0.99344 0.97664 1.02304 0.73703 0.73102 0.73229 1.93621 1.86147 1.55849 1.56830 1.93526 1.42559 1.74540 1.85010 1.31263 1.19293 1.12885 1.15115 1.20812 0.89342 0.99674 0.89937 1.20382 1.02206 0.89923 1.05251 1.19835 0.88497 0.89327 0.91667 1.20775 0.98181 0.96814 1.04611 1.19980 0.96092 0.89847 0.92796 1.21794 1.00365 0.91570 1.00801 1.23907 0.93480 0.86150 0.98949 1.86850 1.35138 1.13820 1.85695 0.92561 0.94063 0.94038 0.85820 0.86311 0.86536 0.86133 0.85656 0.82870 0.84400 0.84208 0.88721 0.88864 0.90225 0.87330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.59 13.29 55.43 0.74 -24.86 16 2 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.53 -14.52 9.36 -34.44 -0.32 -14.84 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.26 6.26 5.01 -5.19 -0.03 6.23 16 10 N -0.94 -19.66 2.83 -59.81 -0.17 -19.83 16 11 C 0.17 3.33 5.24 -83.79 -0.44 2.89 16 12 C -0.12 -2.05 9.41 -39.38 -0.37 -2.42 16 13 C -0.12 -1.64 10.04 -39.61 -0.40 -2.04 16 14 C -0.13 -1.82 10.04 -39.55 -0.40 -2.22 16 15 C -0.11 -1.67 10.04 -39.61 -0.40 -2.07 16 16 C -0.11 -1.95 8.61 -39.38 -0.34 -2.29 16 17 S 2.69 53.38 5.55 -107.50 -0.60 52.78 16 18 O -0.93 -21.51 16.47 -57.17 -0.94 -22.46 16 19 O -0.97 -19.31 14.91 -57.17 -0.85 -20.16 16 20 C -0.70 -11.79 5.98 -39.52 -0.24 -12.03 16 21 C 0.02 0.34 9.50 -39.67 -0.38 -0.03 16 22 C -0.16 -2.23 10.06 -39.30 -0.40 -2.63 16 23 C 0.15 2.10 7.04 -38.95 -0.27 1.82 16 24 C -0.20 -2.65 6.27 -104.10 -0.65 -3.30 16 25 C 0.03 0.48 9.51 -39.72 -0.38 0.10 16 26 C -0.11 -0.96 7.12 -26.52 -0.19 -1.15 16 27 C 0.05 0.40 8.01 38.06 0.30 0.70 16 28 O -0.30 -3.67 11.10 -20.18 -0.22 -3.89 16 29 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.04 1.03 7.58 -51.93 -0.39 0.64 16 31 H 0.04 1.04 7.76 -51.93 -0.40 0.64 16 32 H 0.12 2.00 7.95 -52.49 -0.42 1.58 16 33 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 34 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 35 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 36 H 0.13 2.33 7.52 -52.48 -0.39 1.94 16 37 H 0.15 2.41 7.62 -52.49 -0.40 2.01 16 38 H 0.14 1.63 8.06 -52.49 -0.42 1.20 16 39 H 0.14 1.91 7.63 -52.48 -0.40 1.51 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 378.72 15.07 5.71 5.71 Total: -1.00 -33.35 378.72 -11.68 -45.04 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.34 Total: 2.58 kcal Atomic # 6 Polarization: -26.57 SS G_CDS: -4.98 Total: -31.56 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 0.57 Total: -44.69 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -2.02 Total: -46.51 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 53.38 SS G_CDS: -0.60 Total: 52.78 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.35 -11.68 -45.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108759920.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.264 kcal (2) G-P(sol) polarization free energy of solvation -33.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds