Wall clock time and date at job start Fri Apr 10 2020 14:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99891 * 2 1 4 4 H 1.48500 * 109.46805 * 240.00088 * 3 2 1 5 5 H 1.48502 * 109.47198 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47299 * 119.99968 * 3 2 1 7 7 C 1.37877 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99968 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99934 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46897 * 179.97438 * 9 7 2 11 11 C 1.39672 * 120.00064 * 274.99604 * 10 9 7 12 12 C 1.38912 * 120.07485 * 299.65002 * 11 10 9 13 13 C 1.38109 * 119.92219 * 179.76379 * 12 11 10 14 14 C 1.38281 * 120.07472 * 0.51236 * 13 12 11 15 15 C 1.38286 * 120.15418 * 359.74383 * 14 13 12 16 16 C 1.38108 * 120.06977 * 359.97438 * 15 14 13 17 17 S 1.65602 * 120.00227 * 94.99680 * 10 9 7 18 18 O 1.42106 * 106.39925 * 330.86935 * 17 10 9 19 19 O 1.42091 * 106.40397 * 197.94355 * 17 10 9 20 20 C 1.76201 * 107.21598 * 84.40501 * 17 10 9 21 21 C 1.38289 * 120.11614 * 270.27751 * 20 17 10 22 22 C 1.37934 * 120.35028 * 180.08570 * 21 20 17 23 23 C 1.39288 * 120.23927 * 359.57520 * 22 21 20 24 24 C 1.38885 * 118.87565 * 0.42297 * 23 22 21 25 25 C 1.37736 * 120.78672 * 359.63322 * 24 23 22 26 26 C 1.51647 * 107.04076 * 179.45000 * 24 23 22 27 27 C 1.54712 * 101.91449 * 344.49795 * 26 24 23 28 28 O 1.36139 * 129.88402 * 180.84174 * 23 22 21 29 29 H 0.96995 * 119.99978 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47017 * 59.99807 * 9 7 2 31 31 H 1.08995 * 109.46737 * 299.99337 * 9 7 2 32 32 H 1.08001 * 120.03697 * 0.02562 * 12 11 10 33 33 H 1.08003 * 119.95955 * 180.24700 * 13 12 11 34 34 H 1.08002 * 119.92412 * 179.72014 * 14 13 12 35 35 H 1.07999 * 119.96568 * 180.02562 * 15 14 13 36 36 H 1.08005 * 120.03612 * 179.97438 * 16 15 14 37 37 H 1.07996 * 119.82395 * 359.82230 * 21 20 17 38 38 H 1.07999 * 119.87810 * 179.86177 * 22 21 20 39 39 H 1.08003 * 120.01403 * 180.33011 * 25 24 23 40 40 H 1.08999 * 110.93866 * 226.34420 * 26 24 23 41 41 H 1.08995 * 110.97082 * 102.66329 * 26 24 23 42 42 H 1.08995 * 110.74542 * 266.98159 * 27 26 24 43 43 H 1.09000 * 110.74261 * 143.63562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.7370 -4.0750 -1.2045 12 6 1.8971 -4.5735 -2.1922 13 6 2.4280 -5.0254 -3.3845 14 6 3.7948 -4.9917 -3.5913 15 6 4.6343 -4.5010 -2.6081 16 6 4.1096 -4.0422 -1.4158 17 16 2.6463 -4.3232 1.4292 18 8 2.5466 -3.3156 2.4263 19 8 3.8444 -5.0404 1.1660 20 6 1.4198 -5.5280 1.8150 21 6 0.3128 -5.1757 2.5652 22 6 -0.6494 -6.1154 2.8715 23 6 -0.5184 -7.4264 2.4197 24 6 0.5977 -7.7682 1.6672 25 6 1.5579 -6.8285 1.3635 26 6 0.4748 -9.2425 1.3343 27 6 -0.6133 -9.7056 2.3318 28 8 -1.3446 -8.4950 2.5898 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6242 -2.5567 0.8903 32 1 0.8298 -4.6038 -2.0297 33 1 1.7752 -5.4093 -4.1544 34 1 4.2077 -5.3499 -4.5228 35 1 5.7013 -4.4758 -2.7730 36 1 4.7658 -3.6595 -0.6480 37 1 0.2032 -4.1604 2.9168 38 1 -1.5097 -5.8324 3.4598 39 1 2.4183 -7.1067 0.7729 40 1 1.4156 -9.7624 1.5150 41 1 0.1453 -9.3839 0.3050 42 1 -0.1609 -10.0861 3.2475 43 1 -1.2588 -10.4572 1.8774 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108759920.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:53:36 Heat of formation + Delta-G solvation = -60.251997 kcal Electronic energy + Delta-G solvation = -30077.427933 eV Core-core repulsion = 25986.536221 eV Total energy + Delta-G solvation = -4090.891712 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 359.102 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.25809 -40.31536 -38.68284 -38.35010 -36.99266 -36.91008 -34.60139 -33.84780 -31.79672 -31.54908 -30.83703 -30.34582 -28.51639 -25.00617 -24.83276 -23.86052 -23.49520 -23.00887 -22.76145 -20.18936 -19.03905 -18.84693 -18.60416 -18.19953 -17.90259 -17.59118 -17.17925 -16.95162 -16.36999 -15.93196 -15.73174 -15.35187 -15.17648 -14.89537 -14.50400 -14.43850 -14.26833 -14.23220 -14.10426 -14.00701 -13.79780 -13.47556 -13.28497 -13.19014 -13.03922 -12.87662 -12.75980 -12.60854 -12.40453 -12.22182 -12.13014 -12.10996 -12.05460 -11.89355 -11.71027 -10.61431 -10.47217 -10.18829 -9.76551 -9.63719 -9.21885 -8.21688 -6.33215 -0.75939 -0.32199 0.07506 0.50582 0.57348 1.38429 1.41754 1.48912 1.83751 2.09763 2.32086 2.40299 2.72212 2.92025 3.08784 3.12938 3.42043 3.53465 3.72799 4.00785 4.05075 4.07842 4.12765 4.17729 4.22646 4.33098 4.37409 4.52263 4.64819 4.69302 4.72272 4.74618 4.81292 4.86635 4.94028 4.94497 5.03742 5.11869 5.19434 5.26139 5.30090 5.53338 5.66778 5.69453 5.73277 5.87821 5.91692 6.04624 6.30088 6.72157 7.34573 8.85659 Molecular weight = 359.10amu Principal moments of inertia in cm(-1) A = 0.010018 B = 0.004120 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2794.191138 B = 6794.926256 C = 8305.042897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.017 3.983 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.050 0.950 9 C 0.272 3.728 10 N -0.942 5.942 11 C 0.137 3.863 12 C -0.135 4.135 13 C -0.108 4.108 14 C -0.121 4.121 15 C -0.110 4.110 16 C -0.136 4.136 17 S 2.689 3.311 18 O -0.980 6.980 19 O -0.974 6.974 20 C -0.708 4.708 21 C 0.002 3.998 22 C -0.162 4.162 23 C 0.155 3.845 24 C -0.200 4.200 25 C 0.024 3.976 26 C -0.106 4.106 27 C 0.044 3.956 28 O -0.310 6.310 29 H 0.268 0.732 30 H 0.031 0.969 31 H 0.026 0.974 32 H 0.121 0.879 33 H 0.155 0.845 34 H 0.161 0.839 35 H 0.149 0.851 36 H 0.106 0.894 37 H 0.142 0.858 38 H 0.158 0.842 39 H 0.149 0.851 40 H 0.118 0.882 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.443 -21.498 -2.651 21.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.182 4.182 3 Si 0.779 3.221 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.585 4.585 8 H 0.069 0.931 9 C 0.150 3.850 10 N -0.772 5.772 11 C 0.043 3.957 12 C -0.157 4.157 13 C -0.126 4.126 14 C -0.139 4.139 15 C -0.129 4.129 16 C -0.157 4.157 17 S 2.786 3.214 18 O -0.971 6.971 19 O -0.964 6.964 20 C -0.798 4.798 21 C -0.017 4.017 22 C -0.181 4.181 23 C 0.108 3.892 24 C -0.202 4.202 25 C 0.004 3.996 26 C -0.142 4.142 27 C -0.029 4.029 28 O -0.223 6.223 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.044 0.956 32 H 0.139 0.861 33 H 0.173 0.827 34 H 0.178 0.822 35 H 0.167 0.833 36 H 0.124 0.876 37 H 0.160 0.840 38 H 0.175 0.825 39 H 0.166 0.834 40 H 0.136 0.864 41 H 0.127 0.873 42 H 0.115 0.885 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.748 -21.172 -2.019 21.281 hybrid contribution -0.317 1.174 0.387 1.277 sum 0.431 -19.997 -1.631 20.068 Atomic orbital electron populations 1.69988 1.07054 1.28247 1.50831 1.25664 0.95796 1.02374 0.94406 0.85671 0.78676 0.78857 0.78942 1.19151 1.19848 1.20075 1.21659 0.93399 0.92010 1.51417 0.93149 1.18819 0.86789 0.81953 0.97394 1.55212 1.58903 1.43779 1.19310 1.17663 0.92485 0.98124 0.87439 1.21411 0.99814 0.99630 0.94822 1.21355 0.96254 0.98919 0.96083 1.21531 0.93133 0.99383 0.99856 1.21308 1.01382 0.98019 0.92168 1.21458 0.93978 1.01262 0.99015 1.01734 0.74179 0.73073 0.72413 1.93552 1.87103 1.58150 1.58285 1.93491 1.43625 1.74353 1.84968 1.30649 1.18999 1.12928 1.17248 1.20799 0.90105 0.99908 0.90884 1.20533 1.02151 0.90179 1.05251 1.19983 0.88724 0.89581 0.90959 1.21217 0.96821 0.98919 1.03231 1.20099 0.97111 0.89303 0.93067 1.21984 1.01962 0.88321 1.01960 1.24330 0.93700 0.84998 0.99882 1.86853 1.35625 1.14539 1.85329 0.92254 0.95127 0.95643 0.86065 0.82738 0.82191 0.83316 0.87602 0.84048 0.82455 0.83360 0.86422 0.87277 0.88545 0.84029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.25 13.29 21.45 0.28 -53.96 16 2 C 0.02 1.00 5.46 84.65 0.46 1.46 16 3 Si 0.95 45.35 29.54 68.60 2.03 47.38 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 7 C -0.55 -31.69 9.36 25.60 0.24 -31.45 16 8 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 9 C 0.27 14.25 5.01 85.63 0.43 14.68 16 10 N -0.94 -42.22 2.83 -343.13 -0.97 -43.19 16 11 C 0.14 5.48 5.24 38.22 0.20 5.68 16 12 C -0.14 -4.59 9.41 22.40 0.21 -4.37 16 13 C -0.11 -2.77 10.04 22.25 0.22 -2.55 16 14 C -0.12 -2.84 10.04 22.29 0.22 -2.62 16 15 C -0.11 -3.13 10.04 22.25 0.22 -2.90 16 16 C -0.14 -5.10 8.61 22.40 0.19 -4.91 16 17 S 2.69 115.23 5.55 -56.49 -0.31 114.92 16 18 O -0.98 -49.24 16.47 -128.00 -2.11 -51.35 16 19 O -0.97 -41.32 14.91 -128.00 -1.91 -43.23 16 20 C -0.71 -25.19 5.98 22.31 0.13 -25.05 16 21 C 0.00 0.08 9.50 22.21 0.21 0.30 16 22 C -0.16 -4.60 10.06 22.45 0.23 -4.38 16 23 C 0.15 4.03 7.04 22.68 0.16 4.18 16 24 C -0.20 -4.91 6.27 -19.53 -0.12 -5.03 16 25 C 0.02 0.70 9.51 22.18 0.21 0.91 16 26 C -0.11 -1.48 7.12 30.73 0.22 -1.26 16 27 C 0.04 0.53 8.01 72.57 0.58 1.11 16 28 O -0.31 -6.69 11.10 -95.14 -1.06 -7.75 16 29 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 30 H 0.03 1.64 7.58 -2.39 -0.02 1.62 16 31 H 0.03 1.40 7.76 -2.39 -0.02 1.38 16 32 H 0.12 4.03 7.95 -2.91 -0.02 4.01 16 33 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 34 H 0.16 2.44 8.06 -2.91 -0.02 2.41 16 35 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 36 H 0.11 4.24 7.52 -2.91 -0.02 4.22 16 37 H 0.14 4.99 7.62 -2.91 -0.02 4.97 16 38 H 0.16 3.70 8.06 -2.91 -0.02 3.67 16 39 H 0.15 4.04 7.63 -2.91 -0.02 4.02 16 40 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -76.53 378.72 1.01 -75.52 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 1.03 Total: 17.88 kcal Atomic # 6 Polarization: -60.23 SS G_CDS: 4.02 Total: -56.21 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -0.69 Total: -97.16 kcal Atomic # 8 Polarization: -97.26 SS G_CDS: -5.07 Total: -102.33 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Atomic # 16 Polarization: 115.23 SS G_CDS: -0.31 Total: 114.92 kcal Total: -76.53 1.01 -75.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108759920.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.267 kcal (2) G-P(sol) polarization free energy of solvation -76.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds