Wall clock time and date at job start Fri Apr 10 2020 14:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35915 * 117.00283 * 2 1 4 4 C 1.38746 * 120.04045 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.95457 * 180.02562 * 4 3 2 6 6 C 1.38386 * 120.04501 * 359.97438 * 5 4 3 7 7 Cl 1.73602 * 119.95850 * 179.97438 * 6 5 4 8 8 C 1.38344 * 120.08576 * 359.97438 * 6 5 4 9 9 S 1.76201 * 119.98223 * 179.97438 * 8 6 5 10 10 O 1.42100 * 106.40351 * 181.45986 * 9 8 6 11 11 O 1.42105 * 106.40060 * 48.54013 * 9 8 6 12 12 N 1.65595 * 107.21588 * 295.00364 * 9 8 6 13 13 C 1.36943 * 120.00058 * 269.99454 * 12 9 8 14 14 H 1.08005 * 119.99806 * 129.69954 * 13 12 9 15 15 C 1.38809 * 120.00082 * 309.70804 * 13 12 9 16 16 N 1.31625 * 119.99493 * 334.81430 * 15 13 12 17 17 Si 1.86797 * 120.00135 * 154.81793 * 15 13 12 18 18 H 1.48491 * 109.47307 * 89.99758 * 17 15 13 19 19 H 1.48509 * 109.46884 * 210.00001 * 17 15 13 20 20 H 1.48501 * 109.47244 * 329.99298 * 17 15 13 21 21 C 1.46502 * 120.00510 * 89.99944 * 12 9 8 22 22 C 1.54960 * 110.92528 * 122.30739 * 21 12 9 23 23 C 1.54265 * 104.15917 * 156.29777 * 22 21 12 24 24 C 1.53876 * 106.64349 * 336.44741 * 23 22 21 25 25 C 1.54271 * 106.59405 * 359.97329 * 24 23 22 26 26 C 1.38171 * 120.03952 * 0.25602 * 8 6 5 27 27 H 1.08996 * 109.47438 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47001 * 299.99959 * 1 2 3 29 29 H 1.09009 * 109.46841 * 59.99797 * 1 2 3 30 30 H 1.07998 * 120.02332 * 359.97438 * 4 3 2 31 31 H 1.08007 * 119.97869 * 179.97438 * 5 4 3 32 32 H 0.96999 * 119.99285 * 180.02562 * 16 15 13 33 33 H 1.08999 * 110.67041 * 359.00212 * 21 12 9 34 34 H 1.08997 * 110.47707 * 37.64647 * 22 21 12 35 35 H 1.09000 * 110.52907 * 274.97406 * 22 21 12 36 36 H 1.09000 * 110.03309 * 217.13738 * 23 22 21 37 37 H 1.08996 * 110.03075 * 95.75717 * 23 22 21 38 38 H 1.08991 * 110.03287 * 119.26012 * 24 23 22 39 39 H 1.08997 * 110.03039 * 240.64831 * 24 23 22 40 40 H 1.09000 * 110.48169 * 142.29181 * 25 24 23 41 41 H 1.09000 * 110.48588 * 264.79820 * 25 24 23 42 42 H 1.07996 * 120.01775 * 179.72796 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9203 3.6049 0.0000 6 6 3.3023 3.6763 -0.0005 7 17 4.0905 5.2230 -0.0019 8 6 4.0567 2.5166 0.0000 9 16 5.8162 2.6106 -0.0014 10 8 6.2896 1.2712 -0.0352 11 8 6.1694 3.5343 1.0191 12 7 6.2688 3.3031 -1.4359 13 6 6.5131 2.5156 -2.5293 14 1 6.0451 2.7449 -3.4753 15 6 7.3621 1.4227 -2.4218 16 7 8.2934 1.4018 -1.4919 17 14 7.1829 -0.0183 -3.5968 18 1 8.0326 0.2097 -4.7930 19 1 7.6102 -1.2676 -2.9168 20 1 5.7633 -0.1430 -4.0144 21 6 6.4081 4.7580 -1.5353 22 6 7.8377 5.1474 -1.9890 23 6 7.6659 6.5446 -2.6201 24 6 6.1943 6.6531 -3.0565 25 6 5.5223 5.3176 -2.6761 26 6 3.4311 1.2846 -0.0043 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 0.2128 2.3199 0.0005 31 1 1.3331 4.5114 0.0000 32 1 8.8869 0.6382 -1.4170 33 1 6.1617 5.2339 -0.5861 34 1 8.2097 4.4381 -2.7282 35 1 8.5106 5.1958 -1.1329 36 1 8.3205 6.6463 -3.4857 37 1 7.8956 7.3167 -1.8859 38 1 5.7096 7.4773 -2.5334 39 1 6.1348 6.8083 -4.1337 40 1 4.5063 5.4894 -2.3208 41 1 5.5178 4.6367 -3.5273 42 1 4.0203 0.3795 -0.0083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159552759.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:52:22 Heat of formation + Delta-G solvation = -76.893567 kcal Electronic energy + Delta-G solvation = -29717.300048 eV Core-core repulsion = 25623.253854 eV Total energy + Delta-G solvation = -4094.046194 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 359.079 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.95479 -37.82170 -37.43695 -35.97441 -35.45961 -34.20985 -33.92927 -31.43934 -31.05609 -29.75321 -27.93299 -27.27276 -26.80601 -24.32898 -22.85371 -22.12855 -19.79676 -19.58429 -18.88275 -18.42920 -16.57506 -16.45731 -16.18396 -15.94694 -15.73793 -15.38353 -15.01611 -14.73287 -14.38057 -13.99241 -13.64707 -13.47164 -13.08403 -12.90000 -12.61976 -12.45332 -12.24229 -12.04787 -11.87550 -11.74745 -11.52217 -11.12963 -11.03627 -10.85878 -10.79805 -10.67308 -10.42818 -10.33762 -10.26156 -10.20240 -10.15190 -10.01084 -9.69748 -9.63490 -9.27465 -9.02102 -8.71335 -7.93202 -7.60470 -6.55554 -4.15337 1.12706 1.45482 1.94993 2.43420 3.21581 3.30717 3.31329 3.33036 3.67459 4.14335 4.62256 4.77561 4.90318 4.93930 5.02834 5.04111 5.29540 5.31553 5.35693 5.38613 5.45832 5.54053 5.57955 5.94608 6.09138 6.14300 6.17272 6.20652 6.24887 6.32121 6.33298 6.39927 6.50179 6.53745 6.55169 6.66723 6.72366 6.94255 7.08767 7.19149 7.39695 7.43220 7.65020 8.21501 8.88910 9.33578 10.49321 Molecular weight = 359.08amu Principal moments of inertia in cm(-1) A = 0.009691 B = 0.006137 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.615789 B = 4561.429887 C = 6222.511468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.314 6.314 3 C 0.105 3.895 4 C -0.174 4.174 5 C -0.097 4.097 6 C 0.006 3.994 7 Cl -0.049 7.049 8 C -0.607 4.607 9 S 2.531 3.469 10 O -0.947 6.947 11 O -0.998 6.998 12 N -0.794 5.794 13 C -0.265 4.265 14 H 0.085 0.915 15 C 0.064 3.936 16 N -0.766 5.766 17 Si 0.916 3.084 18 H -0.276 1.276 19 H -0.277 1.277 20 H -0.264 1.264 21 C 0.152 3.848 22 C -0.117 4.117 23 C -0.123 4.123 24 C -0.119 4.119 25 C -0.142 4.142 26 C -0.049 4.049 27 H 0.099 0.901 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.281 0.719 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.125 3.969 -1.767 11.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.059 3.941 4 C -0.193 4.193 5 C -0.117 4.117 6 C -0.022 4.022 7 Cl -0.019 7.019 8 C -0.680 4.680 9 S 2.628 3.372 10 O -0.935 6.935 11 O -0.987 6.987 12 N -0.617 5.617 13 C -0.415 4.415 14 H 0.102 0.898 15 C -0.156 4.156 16 N -0.401 5.401 17 Si 0.741 3.259 18 H -0.202 1.202 19 H -0.202 1.202 20 H -0.188 1.188 21 C 0.044 3.956 22 C -0.156 4.156 23 C -0.161 4.161 24 C -0.157 4.157 25 C -0.181 4.181 26 C -0.069 4.069 27 H 0.117 0.883 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -10.545 3.569 -0.668 11.153 hybrid contribution -1.205 -0.455 -0.572 1.410 sum -11.751 3.114 -1.240 12.220 Atomic orbital electron populations 1.23047 0.78825 1.03845 1.01160 1.86114 1.21020 1.26714 1.88936 1.19218 0.92641 0.84149 0.98086 1.21183 0.99767 0.91851 1.06474 1.20845 0.92531 0.97816 1.00467 1.20324 0.92394 0.86609 1.02869 1.98379 1.78944 1.28363 1.96260 1.32705 1.34144 0.94800 1.06395 1.12235 0.73599 0.74534 0.76805 1.93393 1.76570 1.37381 1.86179 1.93348 1.82182 1.63992 1.59200 1.52780 1.69910 1.10111 1.28880 1.19011 1.23104 1.09232 0.90139 0.89789 1.25702 0.92810 0.99971 0.97111 1.69884 1.11193 1.29515 1.29530 0.86125 0.79413 0.80977 0.79411 1.20208 1.20222 1.18826 1.21950 0.94558 0.81305 0.97784 1.22555 0.97106 0.95135 1.00852 1.22105 0.96214 0.98066 0.99763 1.22031 0.95941 0.97709 1.00058 1.22891 0.98718 0.96102 1.00416 1.20208 0.91064 0.97696 0.97921 0.88278 0.92814 0.92710 0.84883 0.84852 0.90882 0.89187 0.89442 0.92374 0.92448 0.92808 0.92911 0.92539 0.92137 0.90354 0.83088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.83 10.50 -19.47 -0.20 -5.04 16 3 C 0.10 1.81 6.69 -39.22 -0.26 1.55 16 4 C -0.17 -2.57 9.04 -39.44 -0.36 -2.92 16 5 C -0.10 -1.54 9.82 -39.57 -0.39 -1.93 16 6 C 0.01 0.11 6.30 -39.49 -0.25 -0.14 16 7 Cl -0.05 -0.90 20.33 -51.86 -1.05 -1.96 16 8 C -0.61 -13.31 5.91 -39.57 -0.23 -13.54 16 9 S 2.53 64.08 4.94 -107.50 -0.53 63.55 16 10 O -0.95 -26.36 13.18 -57.17 -0.75 -27.12 16 11 O -1.00 -26.78 15.26 -57.17 -0.87 -27.66 16 12 N -0.79 -18.84 2.75 -51.46 -0.14 -18.98 16 13 C -0.27 -6.38 7.60 -15.06 -0.11 -6.49 16 14 H 0.08 1.89 6.74 -52.48 -0.35 1.54 16 15 C 0.06 1.59 3.99 -17.43 -0.07 1.52 16 16 N -0.77 -20.45 11.76 55.49 0.65 -19.80 16 17 Si 0.92 19.68 29.62 -169.99 -5.04 14.64 16 18 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 21 C 0.15 3.16 2.09 -65.90 -0.14 3.03 16 22 C -0.12 -2.30 6.39 -25.03 -0.16 -2.46 16 23 C -0.12 -1.93 6.80 -25.61 -0.17 -2.10 16 24 C -0.12 -1.78 6.80 -25.61 -0.17 -1.96 16 25 C -0.14 -2.51 6.01 -25.07 -0.15 -2.66 16 26 C -0.05 -1.01 9.49 -39.44 -0.37 -1.39 16 27 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.45 7.66 -51.93 -0.40 0.06 16 29 H 0.05 0.47 7.66 -51.92 -0.40 0.07 16 30 H 0.13 1.44 6.30 -52.49 -0.33 1.11 16 31 H 0.13 1.67 8.06 -52.48 -0.42 1.25 16 32 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.09 1.93 4.46 -51.93 -0.23 1.70 16 34 H 0.09 1.85 7.24 -51.93 -0.38 1.47 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 1.02 6.05 -51.93 -0.31 0.71 16 41 H 0.08 1.43 6.48 -51.93 -0.34 1.09 16 42 H 0.15 3.18 7.33 -52.49 -0.38 2.80 16 LS Contribution 351.55 15.07 5.30 5.30 Total: -1.00 -30.67 351.55 -9.71 -40.38 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -5.22 Total: 4.91 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: -1.85 Total: -28.24 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.51 Total: -38.78 kcal Atomic # 8 Polarization: -57.98 SS G_CDS: -1.83 Total: -59.81 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.04 Total: 14.64 kcal Atomic # 16 Polarization: 64.08 SS G_CDS: -0.53 Total: 63.55 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.05 Total: -1.96 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.67 -9.71 -40.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159552759.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.514 kcal (2) G-P(sol) polarization free energy of solvation -30.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds