Wall clock time and date at job start Fri Apr 10 2020 14:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35915 * 117.00283 * 2 1 4 4 C 1.38746 * 120.04045 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.95457 * 180.02562 * 4 3 2 6 6 C 1.38386 * 120.04501 * 359.97438 * 5 4 3 7 7 Cl 1.73602 * 119.95850 * 179.97438 * 6 5 4 8 8 C 1.38344 * 120.08576 * 359.97438 * 6 5 4 9 9 S 1.76201 * 119.98223 * 179.97438 * 8 6 5 10 10 O 1.42100 * 106.40351 * 181.45986 * 9 8 6 11 11 O 1.42105 * 106.40060 * 48.54013 * 9 8 6 12 12 N 1.65595 * 107.21588 * 295.00364 * 9 8 6 13 13 C 1.36943 * 120.00058 * 269.99454 * 12 9 8 14 14 H 1.08005 * 119.99806 * 129.69954 * 13 12 9 15 15 C 1.38809 * 120.00082 * 309.70804 * 13 12 9 16 16 N 1.31625 * 119.99493 * 334.81430 * 15 13 12 17 17 Si 1.86797 * 120.00135 * 154.81793 * 15 13 12 18 18 H 1.48491 * 109.47307 * 89.99758 * 17 15 13 19 19 H 1.48509 * 109.46884 * 210.00001 * 17 15 13 20 20 H 1.48501 * 109.47244 * 329.99298 * 17 15 13 21 21 C 1.46502 * 120.00510 * 89.99944 * 12 9 8 22 22 C 1.54960 * 110.92528 * 122.30739 * 21 12 9 23 23 C 1.54265 * 104.15917 * 156.29777 * 22 21 12 24 24 C 1.53876 * 106.64349 * 336.44741 * 23 22 21 25 25 C 1.54271 * 106.59405 * 359.97329 * 24 23 22 26 26 C 1.38171 * 120.03952 * 0.25602 * 8 6 5 27 27 H 1.08996 * 109.47438 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47001 * 299.99959 * 1 2 3 29 29 H 1.09009 * 109.46841 * 59.99797 * 1 2 3 30 30 H 1.07998 * 120.02332 * 359.97438 * 4 3 2 31 31 H 1.08007 * 119.97869 * 179.97438 * 5 4 3 32 32 H 0.96999 * 119.99285 * 180.02562 * 16 15 13 33 33 H 1.08999 * 110.67041 * 359.00212 * 21 12 9 34 34 H 1.08997 * 110.47707 * 37.64647 * 22 21 12 35 35 H 1.09000 * 110.52907 * 274.97406 * 22 21 12 36 36 H 1.09000 * 110.03309 * 217.13738 * 23 22 21 37 37 H 1.08996 * 110.03075 * 95.75717 * 23 22 21 38 38 H 1.08991 * 110.03287 * 119.26012 * 24 23 22 39 39 H 1.08997 * 110.03039 * 240.64831 * 24 23 22 40 40 H 1.09000 * 110.48169 * 142.29181 * 25 24 23 41 41 H 1.09000 * 110.48588 * 264.79820 * 25 24 23 42 42 H 1.07996 * 120.01775 * 179.72796 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2914 2.3752 0.0005 5 6 1.9203 3.6049 0.0000 6 6 3.3023 3.6763 -0.0005 7 17 4.0905 5.2230 -0.0019 8 6 4.0567 2.5166 0.0000 9 16 5.8162 2.6106 -0.0014 10 8 6.2896 1.2712 -0.0352 11 8 6.1694 3.5343 1.0191 12 7 6.2688 3.3031 -1.4359 13 6 6.5131 2.5156 -2.5293 14 1 6.0451 2.7449 -3.4753 15 6 7.3621 1.4227 -2.4218 16 7 8.2934 1.4018 -1.4919 17 14 7.1829 -0.0183 -3.5968 18 1 8.0326 0.2097 -4.7930 19 1 7.6102 -1.2676 -2.9168 20 1 5.7633 -0.1430 -4.0144 21 6 6.4081 4.7580 -1.5353 22 6 7.8377 5.1474 -1.9890 23 6 7.6659 6.5446 -2.6201 24 6 6.1943 6.6531 -3.0565 25 6 5.5223 5.3176 -2.6761 26 6 3.4311 1.2846 -0.0043 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 0.2128 2.3199 0.0005 31 1 1.3331 4.5114 0.0000 32 1 8.8869 0.6382 -1.4170 33 1 6.1617 5.2339 -0.5861 34 1 8.2097 4.4381 -2.7282 35 1 8.5106 5.1958 -1.1329 36 1 8.3205 6.6463 -3.4857 37 1 7.8956 7.3167 -1.8859 38 1 5.7096 7.4773 -2.5334 39 1 6.1348 6.8083 -4.1337 40 1 4.5063 5.4894 -2.3208 41 1 5.5178 4.6367 -3.5273 42 1 4.0203 0.3795 -0.0083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159552759.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:52:20 Heat of formation + Delta-G solvation = -96.625376 kcal Electronic energy + Delta-G solvation = -29718.155683 eV Core-core repulsion = 25623.253854 eV Total energy + Delta-G solvation = -4094.901830 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 359.079 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.20165 -39.34647 -38.74376 -37.65921 -37.18309 -36.12712 -35.77126 -33.24353 -32.43505 -31.05893 -29.35241 -28.40258 -28.18588 -26.10903 -24.25505 -23.47122 -21.43980 -20.93101 -20.60311 -19.88113 -18.35817 -17.85895 -17.60545 -17.51184 -17.08223 -16.75618 -16.68754 -16.28265 -15.97132 -15.47906 -15.09140 -14.88324 -14.55555 -14.39533 -14.06469 -13.82053 -13.76118 -13.57694 -13.37036 -13.20167 -12.88995 -12.83889 -12.47344 -12.39137 -12.28490 -12.20249 -12.11872 -12.04402 -12.00534 -11.81417 -11.78393 -11.47238 -11.33381 -10.99662 -10.84302 -10.57108 -10.44119 -9.42646 -9.26251 -8.44387 -6.07649 -0.31792 0.08406 0.09789 1.00321 1.47373 1.54785 1.61565 2.23380 2.26564 2.36593 2.84515 3.02853 3.46467 3.56684 3.81855 3.90344 4.01452 4.02386 4.13386 4.20912 4.35618 4.38148 4.39570 4.62403 4.65954 4.70834 4.80781 4.81570 4.88613 4.93122 4.95411 5.01993 5.03646 5.18865 5.25947 5.28870 5.33679 5.41540 5.48800 5.61560 5.70199 5.98799 6.27601 6.32259 7.02904 7.48236 8.60898 Molecular weight = 359.08amu Principal moments of inertia in cm(-1) A = 0.009691 B = 0.006137 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.615789 B = 4561.429887 C = 6222.511468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.334 6.334 3 C 0.110 3.890 4 C -0.151 4.151 5 C -0.084 4.084 6 C -0.013 4.013 7 Cl -0.049 7.049 8 C -0.634 4.634 9 S 2.533 3.467 10 O -0.987 6.987 11 O -1.028 7.028 12 N -0.803 5.803 13 C -0.268 4.268 14 H 0.099 0.901 15 C 0.023 3.977 16 N -0.810 5.810 17 Si 0.965 3.035 18 H -0.254 1.254 19 H -0.291 1.291 20 H -0.256 1.256 21 C 0.140 3.860 22 C -0.120 4.120 23 C -0.115 4.115 24 C -0.112 4.112 25 C -0.136 4.136 26 C -0.082 4.082 27 H 0.121 0.879 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.186 0.814 31 H 0.176 0.824 32 H 0.277 0.723 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.010 5.438 -3.382 16.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.248 6.248 3 C 0.064 3.936 4 C -0.170 4.170 5 C -0.103 4.103 6 C -0.041 4.041 7 Cl -0.020 7.020 8 C -0.713 4.713 9 S 2.636 3.364 10 O -0.976 6.976 11 O -1.017 7.017 12 N -0.626 5.626 13 C -0.418 4.418 14 H 0.116 0.884 15 C -0.193 4.193 16 N -0.447 5.447 17 Si 0.788 3.212 18 H -0.178 1.178 19 H -0.217 1.217 20 H -0.180 1.180 21 C 0.033 3.967 22 C -0.160 4.160 23 C -0.153 4.153 24 C -0.150 4.150 25 C -0.175 4.175 26 C -0.102 4.102 27 H 0.139 0.861 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.203 0.797 31 H 0.194 0.806 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.388 5.060 -2.310 15.426 hybrid contribution -0.225 -0.954 0.034 0.981 sum -14.613 4.106 -2.277 15.349 Atomic orbital electron populations 1.23516 0.75565 1.06171 1.02987 1.86108 1.24325 1.25922 1.88462 1.19181 0.91559 0.85965 0.96900 1.21733 1.02075 0.90109 1.03054 1.21351 0.91004 1.00005 0.97918 1.20554 0.93920 0.85748 1.03907 1.98368 1.79358 1.27952 1.96317 1.32015 1.32348 0.96739 1.10160 1.11536 0.74590 0.73495 0.76823 1.93333 1.78420 1.39102 1.86726 1.93289 1.83555 1.64436 1.60446 1.52683 1.70587 1.11253 1.28093 1.19315 1.22518 1.09323 0.90595 0.88396 1.26551 0.92312 1.02159 0.98243 1.69979 1.12666 1.30080 1.31946 0.85371 0.80008 0.77561 0.78283 1.17797 1.21680 1.17959 1.22215 0.96012 0.79747 0.98775 1.22533 0.96137 0.97545 0.99746 1.22072 0.97452 0.95329 1.00489 1.22030 0.94783 0.96468 1.01760 1.22822 0.98752 0.97281 0.98627 1.20095 0.93183 0.96423 1.00510 0.86071 0.90808 0.90787 0.79680 0.80638 0.91301 0.90065 0.91520 0.94510 0.90667 0.91455 0.91086 0.90229 0.91338 0.91104 0.85552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.29 16 2 O -0.33 -9.54 10.50 -92.60 -0.97 -10.51 16 3 C 0.11 3.61 6.69 22.50 0.15 3.76 16 4 C -0.15 -3.79 9.04 22.36 0.20 -3.59 16 5 C -0.08 -2.33 9.82 22.28 0.22 -2.11 16 6 C -0.01 -0.50 6.30 22.33 0.14 -0.36 16 7 Cl -0.05 -1.79 20.33 -2.72 -0.06 -1.84 16 8 C -0.63 -28.47 5.91 22.28 0.13 -28.34 16 9 S 2.53 135.36 4.94 -56.49 -0.28 135.08 16 10 O -0.99 -58.93 13.18 -128.00 -1.69 -60.61 16 11 O -1.03 -58.31 15.26 -128.00 -1.95 -60.27 16 12 N -0.80 -39.59 2.75 -316.72 -0.87 -40.46 16 13 C -0.27 -13.32 7.60 84.03 0.64 -12.68 16 14 H 0.10 4.46 6.74 -2.91 -0.02 4.44 16 15 C 0.02 1.19 3.99 84.86 0.34 1.53 16 16 N -0.81 -45.91 11.76 21.65 0.25 -45.65 16 17 Si 0.97 41.26 29.62 68.60 2.03 43.29 16 18 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 19 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 20 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 21 C 0.14 5.93 2.09 46.31 0.10 6.02 16 22 C -0.12 -4.84 6.39 31.69 0.20 -4.64 16 23 C -0.12 -3.42 6.80 31.32 0.21 -3.20 16 24 C -0.11 -3.05 6.80 31.32 0.21 -2.84 16 25 C -0.14 -4.63 6.01 31.67 0.19 -4.44 16 26 C -0.08 -3.47 9.49 22.36 0.21 -3.26 16 27 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.07 0.86 7.66 -2.39 -0.02 0.84 16 29 H 0.07 0.88 7.66 -2.38 -0.02 0.86 16 30 H 0.19 2.70 6.30 -2.91 -0.02 2.68 16 31 H 0.18 3.38 8.06 -2.91 -0.02 3.36 16 32 H 0.28 15.02 8.31 -92.71 -0.77 14.25 16 33 H 0.08 3.58 4.46 -2.39 -0.01 3.57 16 34 H 0.07 2.93 7.24 -2.39 -0.02 2.92 16 35 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.07 2.20 6.05 -2.39 -0.01 2.18 16 41 H 0.07 2.51 6.48 -2.39 -0.02 2.49 16 42 H 0.13 5.77 7.33 -2.91 -0.02 5.75 16 Total: -1.00 -73.12 351.55 1.59 -71.54 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 1.06 Total: 22.30 kcal Atomic # 6 Polarization: -56.93 SS G_CDS: 4.06 Total: -52.87 kcal Atomic # 7 Polarization: -85.49 SS G_CDS: -0.62 Total: -86.11 kcal Atomic # 8 Polarization: -126.78 SS G_CDS: -4.61 Total: -131.39 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Atomic # 16 Polarization: 135.36 SS G_CDS: -0.28 Total: 135.08 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -0.06 Total: -1.84 kcal Total: -73.12 1.59 -71.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159552759.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.087 kcal (2) G-P(sol) polarization free energy of solvation -73.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds