Wall clock time and date at job start Fri Apr 10 2020 14:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86793 * 120.00341 * 2 1 4 4 H 1.48500 * 109.47562 * 270.00495 * 3 2 1 5 5 H 1.48502 * 109.47131 * 30.00124 * 3 2 1 6 6 H 1.48494 * 109.47269 * 149.99880 * 3 2 1 7 7 C 1.39948 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00192 * 195.90759 * 7 2 1 9 9 C 1.41395 * 119.99949 * 15.91220 * 7 2 1 10 10 C 1.40715 * 120.24382 * 205.56088 * 9 7 2 11 11 C 1.37615 * 119.74635 * 180.02562 * 10 9 7 12 12 C 1.38629 * 120.24974 * 0.02562 * 11 10 9 13 13 S 1.76200 * 119.75217 * 179.97438 * 12 11 10 14 14 O 1.42102 * 106.40030 * 336.46544 * 13 12 11 15 15 O 1.42101 * 106.40632 * 203.54099 * 13 12 11 16 16 N 1.65597 * 107.21762 * 90.00350 * 13 12 11 17 17 C 1.46505 * 120.00086 * 267.42008 * 16 13 12 18 18 C 1.53001 * 109.47140 * 264.99820 * 17 16 13 19 19 C 1.52992 * 109.47383 * 179.97438 * 18 17 16 20 20 O 1.42902 * 109.47517 * 179.97438 * 19 18 17 21 21 C 1.39673 * 120.00317 * 87.41763 * 16 13 12 22 22 C 1.38912 * 120.07976 * 243.28714 * 21 16 13 23 23 C 1.38100 * 119.92842 * 180.27438 * 22 21 16 24 24 C 1.38289 * 120.07543 * 359.97438 * 23 22 21 25 25 C 1.38287 * 120.14518 * 0.02562 * 24 23 22 26 26 C 1.38095 * 120.07940 * 359.97438 * 25 24 23 27 27 C 1.38635 * 120.50127 * 0.25703 * 12 11 10 28 28 C 1.37624 * 120.24452 * 359.44927 * 27 12 11 29 29 H 0.96999 * 120.00009 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.12728 * 359.97438 * 10 9 7 31 31 H 1.08002 * 119.87601 * 179.97438 * 11 10 9 32 32 H 1.08999 * 109.47007 * 24.99797 * 17 16 13 33 33 H 1.09002 * 109.47237 * 144.99741 * 17 16 13 34 34 H 1.09005 * 109.47223 * 300.00324 * 18 17 16 35 35 H 1.09002 * 109.47120 * 59.99849 * 18 17 16 36 36 H 1.09005 * 109.47540 * 300.00540 * 19 18 17 37 37 H 1.09002 * 109.46781 * 60.00050 * 19 18 17 38 38 H 0.96696 * 114.00452 * 180.02562 * 20 19 18 39 39 H 1.08005 * 120.02927 * 0.25132 * 22 21 16 40 40 H 1.08002 * 119.96104 * 180.02562 * 23 22 21 41 41 H 1.07998 * 119.92376 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.95739 * 179.97438 * 25 24 23 43 43 H 1.08007 * 120.04073 * 179.97438 * 26 25 24 44 44 H 1.08006 * 119.87864 * 179.69845 * 27 12 11 45 45 H 1.08003 * 120.12112 * 180.27190 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4398 2.6526 0.7001 6 1 3.5398 1.4400 0.7000 7 6 2.0079 -1.2120 0.0005 8 1 3.0569 -1.2299 0.2569 9 6 1.3415 -2.4132 -0.3346 10 6 1.8145 -3.6458 0.1524 11 6 1.1583 -4.8086 -0.1807 12 6 0.0357 -4.7689 -0.9932 13 16 -0.7939 -6.2659 -1.4120 14 8 0.1630 -7.3073 -1.2732 15 8 -1.4956 -6.0112 -2.6211 16 7 -1.9443 -6.5302 -0.2505 17 6 -1.6281 -7.3524 0.9201 18 6 -2.0761 -8.7934 0.6673 19 6 -1.7453 -9.6521 1.8895 20 8 -2.1642 -10.9979 1.6537 21 6 -3.2162 -5.9693 -0.3869 22 6 -3.6696 -5.0386 0.5394 23 6 -4.9299 -4.4902 0.4047 24 6 -5.7401 -4.8661 -0.6510 25 6 -5.2918 -5.7923 -1.5749 26 6 -4.0327 -6.3447 -1.4462 27 6 -0.4357 -3.5609 -1.4835 28 6 0.2011 -2.3850 -1.1584 29 1 -0.4850 0.8400 0.0004 30 1 2.6896 -3.6791 0.7845 31 1 1.5197 -5.7559 0.1916 32 1 -0.5530 -7.3322 1.0986 33 1 -2.1487 -6.9578 1.7926 34 1 -3.1512 -8.8136 0.4888 35 1 -1.5554 -9.1880 -0.2052 36 1 -0.6701 -9.6318 2.0677 37 1 -2.2656 -9.2576 2.7623 38 1 -1.9857 -11.6000 2.3890 39 1 -3.0372 -4.7446 1.3641 40 1 -5.2828 -3.7662 1.1243 41 1 -6.7254 -4.4360 -0.7537 42 1 -5.9273 -6.0841 -2.3980 43 1 -3.6834 -7.0683 -2.1679 44 1 -1.3083 -3.5422 -2.1196 45 1 -0.1704 -1.4446 -1.5379 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095448602.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:52:28 Heat of formation + Delta-G solvation = -104.710769 kcal Electronic energy + Delta-G solvation = -30292.173013 eV Core-core repulsion = 26172.041946 eV Total energy + Delta-G solvation = -4120.131068 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.118 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.48614 -39.41619 -38.50156 -38.03160 -36.97462 -36.83976 -35.81997 -33.05941 -32.10496 -31.81100 -31.33176 -30.05080 -27.64475 -26.18419 -23.67580 -23.42918 -23.24163 -22.91940 -22.28891 -20.20847 -19.45019 -19.01701 -18.52912 -18.28232 -17.71086 -17.22452 -17.00272 -16.45698 -16.17457 -16.07919 -15.82617 -15.27047 -15.09162 -14.99277 -14.57588 -14.32409 -14.20481 -14.12933 -14.01223 -13.88929 -13.66856 -13.60604 -13.17100 -13.15314 -13.03860 -12.92481 -12.91058 -12.62979 -12.39391 -12.14808 -12.07905 -12.00304 -11.92808 -11.58277 -11.35826 -11.26237 -10.86176 -10.65545 -9.84996 -9.81343 -9.58824 -9.38364 -8.87147 -6.67110 -0.55908 0.39861 0.44651 0.50351 1.02944 1.35838 1.42777 1.50721 2.00489 2.11123 2.49534 2.79018 2.85029 3.31984 3.44004 3.50319 3.75994 4.02166 4.09773 4.13956 4.20441 4.25958 4.27271 4.31779 4.35827 4.55720 4.56781 4.58092 4.64566 4.68867 4.83694 4.86614 4.93704 5.06178 5.12269 5.14901 5.19837 5.20701 5.45401 5.49963 5.55650 5.60479 5.62040 5.69891 5.76312 5.91280 6.12183 6.18624 6.46837 6.66109 6.78036 6.93350 8.07417 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.011126 B = 0.003290 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.947137 B = 8508.883474 C = 9691.114072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.034 3.966 3 Si 0.992 3.008 4 H -0.262 1.262 5 H -0.263 1.263 6 H -0.253 1.253 7 C -0.463 4.463 8 H 0.093 0.907 9 C 0.113 3.887 10 C -0.252 4.252 11 C -0.002 4.002 12 C -0.794 4.794 13 S 2.704 3.296 14 O -0.988 6.988 15 O -0.992 6.992 16 N -0.946 5.946 17 C 0.122 3.878 18 C -0.139 4.139 19 C 0.081 3.919 20 O -0.597 6.597 21 C 0.126 3.874 22 C -0.126 4.126 23 C -0.114 4.114 24 C -0.118 4.118 25 C -0.115 4.115 26 C -0.129 4.129 27 C -0.018 4.018 28 C -0.202 4.202 29 H 0.298 0.702 30 H 0.115 0.885 31 H 0.128 0.872 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.399 0.601 39 H 0.128 0.872 40 H 0.148 0.852 41 H 0.155 0.845 42 H 0.148 0.852 43 H 0.116 0.884 44 H 0.104 0.896 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.126 -8.114 6.406 13.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.186 4.186 3 Si 0.811 3.189 4 H -0.186 1.186 5 H -0.187 1.187 6 H -0.176 1.176 7 C -0.489 4.489 8 H 0.111 0.889 9 C 0.110 3.890 10 C -0.272 4.272 11 C -0.022 4.022 12 C -0.888 4.888 13 S 2.804 3.196 14 O -0.978 6.978 15 O -0.982 6.982 16 N -0.775 5.775 17 C -0.002 4.002 18 C -0.178 4.178 19 C 0.003 3.997 20 O -0.406 6.406 21 C 0.033 3.967 22 C -0.147 4.147 23 C -0.133 4.133 24 C -0.136 4.136 25 C -0.133 4.133 26 C -0.150 4.150 27 C -0.038 4.038 28 C -0.222 4.222 29 H 0.110 0.890 30 H 0.134 0.866 31 H 0.145 0.855 32 H 0.109 0.891 33 H 0.125 0.875 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.250 0.750 39 H 0.146 0.854 40 H 0.166 0.834 41 H 0.173 0.827 42 H 0.166 0.834 43 H 0.134 0.866 44 H 0.122 0.878 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.321 -8.330 5.154 13.522 hybrid contribution 0.845 1.051 0.639 1.492 sum -8.476 -7.280 5.793 12.586 Atomic orbital electron populations 1.69841 1.09283 1.31827 1.30782 1.27005 0.95633 1.05137 0.90798 0.85039 0.79188 0.74893 0.79780 1.18648 1.18727 1.17609 1.20255 0.98338 0.91759 1.38587 0.88873 1.18194 0.90645 0.93400 0.86796 1.21298 1.04923 0.92755 1.08254 1.20451 0.91824 0.97903 0.92042 1.29533 1.16361 1.16847 1.26073 1.01084 0.72149 0.73573 0.72750 1.93462 1.61544 1.56177 1.86631 1.93461 1.73924 1.86822 1.44034 1.55247 1.21470 1.61433 1.39382 1.21442 1.02280 0.88887 0.87547 1.21905 1.02336 0.94305 0.99278 1.22048 0.99265 0.81868 0.96505 1.86422 1.85901 1.20630 1.47604 1.17505 0.84891 0.96382 0.97957 1.21461 0.97534 0.95660 1.00061 1.21375 0.93206 0.99612 0.99088 1.21563 1.01064 0.97051 0.93909 1.21332 0.94920 0.97078 0.99988 1.21518 0.94639 1.00814 0.98067 1.20346 0.96630 0.91988 0.94823 1.21328 1.00818 0.96723 1.03358 0.89033 0.86649 0.85451 0.89058 0.87517 0.91169 0.92892 0.92255 0.91106 0.75047 0.85381 0.83428 0.82744 0.83398 0.86614 0.87775 0.87126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.82 10.92 21.83 0.24 -37.58 16 2 C 0.03 1.54 5.17 85.26 0.44 1.98 16 3 Si 0.99 34.13 29.59 68.60 2.03 36.16 16 4 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 5 H -0.26 -8.53 7.11 99.48 0.71 -7.83 16 6 H -0.25 -8.40 7.11 99.48 0.71 -7.69 16 7 C -0.46 -22.85 9.06 23.46 0.21 -22.63 16 8 H 0.09 4.33 7.89 -2.91 -0.02 4.30 16 9 C 0.11 5.85 5.57 -21.29 -0.12 5.73 16 10 C -0.25 -11.92 9.80 22.73 0.22 -11.69 16 11 C 0.00 -0.11 9.49 22.22 0.21 0.11 16 12 C -0.79 -35.95 6.00 22.46 0.13 -35.82 16 13 S 2.70 109.25 5.60 -56.49 -0.32 108.93 16 14 O -0.99 -41.64 16.14 -128.00 -2.07 -43.70 16 15 O -0.99 -44.17 15.04 -128.00 -1.92 -46.09 16 16 N -0.95 -30.98 2.83 -339.40 -0.96 -31.94 16 17 C 0.12 3.19 5.27 86.38 0.46 3.64 16 18 C -0.14 -3.52 5.89 30.59 0.18 -3.34 16 19 C 0.08 1.56 7.05 71.98 0.51 2.06 16 20 O -0.60 -12.11 13.66 -148.98 -2.04 -14.15 16 21 C 0.13 3.99 5.22 38.22 0.20 4.19 16 22 C -0.13 -3.59 9.51 22.40 0.21 -3.37 16 23 C -0.11 -2.69 10.04 22.25 0.22 -2.47 16 24 C -0.12 -2.52 10.04 22.29 0.22 -2.30 16 25 C -0.11 -2.80 10.04 22.25 0.22 -2.58 16 26 C -0.13 -3.97 8.73 22.40 0.20 -3.77 16 27 C -0.02 -0.86 9.49 22.22 0.21 -0.65 16 28 C -0.20 -10.50 8.69 22.73 0.20 -10.30 16 29 H 0.30 12.61 8.30 -92.71 -0.77 11.84 16 30 H 0.12 4.94 8.06 -2.91 -0.02 4.92 16 31 H 0.13 4.92 7.60 -2.91 -0.02 4.89 16 32 H 0.09 2.34 7.54 -2.39 -0.02 2.32 16 33 H 0.11 2.22 7.75 -2.39 -0.02 2.20 16 34 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.40 3.86 9.12 -74.06 -0.68 3.19 16 39 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16 40 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 41 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 42 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 43 H 0.12 3.71 7.52 -2.91 -0.02 3.69 16 44 H 0.10 4.89 7.59 -2.91 -0.02 4.87 16 45 H 0.11 5.89 6.17 -2.91 -0.02 5.87 16 Total: -1.00 -67.92 392.48 -0.76 -68.68 By element: Atomic # 1 Polarization: 40.57 SS G_CDS: 0.34 Total: 40.91 kcal Atomic # 6 Polarization: -85.15 SS G_CDS: 3.93 Total: -81.22 kcal Atomic # 7 Polarization: -68.80 SS G_CDS: -0.72 Total: -69.52 kcal Atomic # 8 Polarization: -97.92 SS G_CDS: -6.03 Total: -103.94 kcal Atomic # 14 Polarization: 34.13 SS G_CDS: 2.03 Total: 36.16 kcal Atomic # 16 Polarization: 109.25 SS G_CDS: -0.32 Total: 108.93 kcal Total: -67.92 -0.76 -68.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095448602.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.032 kcal (2) G-P(sol) polarization free energy of solvation -67.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds