Wall clock time and date at job start Fri Apr 10 2020 14:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35902 * 116.99961 * 2 1 4 4 C 1.38752 * 120.05464 * 0.02562 * 3 2 1 5 5 C 1.38129 * 119.93913 * 179.68161 * 4 3 2 6 6 C 1.38278 * 120.05846 * 0.56934 * 5 4 3 7 7 S 1.76200 * 119.94731 * 179.72355 * 6 5 4 8 8 O 1.42103 * 106.40363 * 161.63304 * 7 6 5 9 9 O 1.42097 * 106.39952 * 28.71552 * 7 6 5 10 10 N 1.65596 * 107.22024 * 275.17382 * 7 6 5 11 11 C 1.46500 * 120.00050 * 88.92958 * 10 7 6 12 12 C 1.38857 * 120.00181 * 268.93029 * 10 7 6 13 13 C 1.39566 * 119.83958 * 26.44843 * 12 10 7 14 14 C 1.36345 * 120.15953 * 179.72090 * 13 12 10 15 15 C 1.40884 * 119.83598 * 0.55412 * 14 13 12 16 16 C 1.41131 * 120.15751 * 179.69916 * 15 14 13 17 17 H 1.07998 * 120.00593 * 163.16521 * 16 15 14 18 18 C 1.39872 * 119.99858 * 343.17088 * 16 15 14 19 19 N 1.30894 * 119.99774 * 331.07565 * 18 16 15 20 20 Si 1.86803 * 119.99922 * 151.07740 * 18 16 15 21 21 H 1.48504 * 109.47058 * 94.99328 * 20 18 16 22 22 H 1.48503 * 109.46892 * 214.99451 * 20 18 16 23 23 H 1.48503 * 109.47140 * 334.99425 * 20 18 16 24 24 C 1.40890 * 119.68846 * 359.72148 * 15 14 13 25 25 C 1.36345 * 119.83698 * 359.97438 * 24 15 14 26 26 C 1.38244 * 120.11074 * 359.45021 * 6 5 4 27 27 C 1.38168 * 120.05658 * 0.25518 * 26 6 5 28 28 C 1.50701 * 120.03063 * 179.97438 * 27 26 6 29 29 H 1.08995 * 109.46875 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47041 * 299.99970 * 1 2 3 31 31 H 1.08999 * 109.47029 * 59.99767 * 1 2 3 32 32 H 1.08002 * 120.02905 * 359.97438 * 4 3 2 33 33 H 1.08001 * 119.96695 * 180.31406 * 5 4 3 34 34 H 1.08996 * 109.47377 * 90.00023 * 11 10 7 35 35 H 1.09005 * 109.47140 * 329.99813 * 11 10 7 36 36 H 1.09005 * 109.47054 * 210.00095 * 11 10 7 37 37 H 1.08003 * 119.91956 * 359.97438 * 13 12 10 38 38 H 1.07997 * 120.08154 * 180.27604 * 14 13 12 39 39 H 0.97005 * 119.99844 * 180.02562 * 19 18 16 40 40 H 1.07996 * 120.07863 * 179.97438 * 24 15 14 41 41 H 1.07989 * 119.92128 * 179.97438 * 25 24 15 42 42 H 1.07998 * 119.97302 * 180.27417 * 26 6 5 43 43 H 1.09003 * 109.46640 * 89.99772 * 28 27 26 44 44 H 1.08995 * 109.47084 * 209.99561 * 28 27 26 45 45 H 1.08997 * 109.47109 * 330.00323 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9210 3.6048 0.0072 6 6 3.3019 3.6758 0.0014 7 16 4.1019 5.2457 0.0026 8 8 5.4387 5.0146 0.4256 9 8 3.2217 6.1440 0.6640 10 7 4.1906 5.7519 -1.5716 11 6 3.0938 6.5292 -2.1540 12 6 5.3045 5.4396 -2.3397 13 6 6.0582 4.3038 -2.0403 14 6 7.1498 3.9879 -2.7937 15 6 7.5231 4.8177 -3.8693 16 6 8.6555 4.5006 -4.6496 17 1 8.7901 4.9598 -5.6177 18 6 9.6035 3.5913 -4.1691 19 7 9.7925 3.4627 -2.8803 20 14 10.6000 2.5606 -5.3667 21 1 11.8984 3.2298 -5.6344 22 1 10.8463 1.2191 -4.7793 23 1 9.8474 2.4135 -6.6384 24 6 6.7608 5.9658 -4.1620 25 6 5.6680 6.2660 -3.4040 26 6 4.0560 2.5171 0.0005 27 6 3.4312 1.2848 -0.0001 28 6 4.2538 0.0221 -0.0017 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2128 2.3203 0.0005 33 1 1.3341 4.5113 0.0127 34 1 3.2761 7.5917 -1.9933 35 1 2.1549 6.2455 -1.6785 36 1 3.0344 6.3286 -3.2238 37 1 5.7736 3.6713 -1.2124 38 1 7.7295 3.1062 -2.5636 39 1 10.4502 2.8324 -2.5470 40 1 7.0415 6.6065 -4.9849 41 1 5.0830 7.1459 -3.6269 42 1 5.1344 2.5752 0.0004 43 1 4.4529 -0.2831 1.0256 44 1 3.7060 -0.7677 -0.5157 45 1 5.1974 0.2039 -0.5160 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224647579.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:53:31 Heat of formation + Delta-G solvation = -73.292841 kcal Electronic energy + Delta-G solvation = -30412.414140 eV Core-core repulsion = 26293.645456 eV Total energy + Delta-G solvation = -4118.768684 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.118 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.42919 -40.00296 -38.65446 -38.45154 -37.11263 -36.99894 -34.97525 -34.05235 -31.86412 -31.40113 -30.86241 -28.60183 -27.96771 -27.83754 -26.07501 -23.83748 -23.29166 -22.79086 -22.51283 -20.07710 -19.34319 -19.14859 -18.78585 -18.24204 -17.93217 -17.47703 -16.86650 -16.82998 -16.04792 -15.98571 -15.63697 -15.37301 -15.07384 -14.86908 -14.65924 -14.58803 -14.37024 -14.33605 -13.96268 -13.82819 -13.63516 -13.33878 -13.28865 -13.23163 -13.20240 -13.11698 -12.87383 -12.83715 -12.65440 -12.45138 -12.28333 -12.23293 -12.03363 -11.95877 -11.71728 -11.32870 -11.13207 -10.53603 -10.09923 -9.58068 -9.44934 -8.93705 -8.65885 -6.16422 -0.74667 -0.24049 0.10684 0.94724 1.16287 1.40038 1.49572 1.58931 1.84948 2.12863 2.21683 2.34357 2.61059 2.77591 3.18131 3.55754 3.62945 3.74323 3.91585 4.01250 4.05292 4.26678 4.31793 4.37050 4.41694 4.44566 4.46372 4.63115 4.67312 4.71711 4.73111 4.77761 4.90085 4.93296 4.95749 4.98767 5.09723 5.16002 5.18319 5.29460 5.34514 5.51504 5.53168 5.68827 6.07495 6.10357 6.18590 6.19869 6.37681 6.68459 6.95258 7.07185 8.27436 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.010046 B = 0.003540 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.405449 B = 7908.031546 C = 9673.210528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.318 6.318 3 C 0.179 3.821 4 C -0.218 4.218 5 C 0.009 3.991 6 C -0.714 4.714 7 S 2.696 3.304 8 O -0.985 6.985 9 O -0.973 6.973 10 N -0.927 5.927 11 C 0.077 3.923 12 C 0.017 3.983 13 C -0.128 4.128 14 C -0.182 4.182 15 C 0.072 3.928 16 C -0.496 4.496 17 H 0.081 0.919 18 C 0.042 3.958 19 N -0.807 5.807 20 Si 0.976 3.024 21 H -0.261 1.261 22 H -0.266 1.266 23 H -0.256 1.256 24 C -0.230 4.230 25 C -0.095 4.095 26 C -0.003 4.003 27 C -0.148 4.148 28 C -0.107 4.107 29 H 0.124 0.876 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.176 0.824 33 H 0.163 0.837 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.291 0.709 40 H 0.107 0.893 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.393 -6.563 3.934 20.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.230 6.230 3 C 0.131 3.869 4 C -0.237 4.237 5 C -0.010 4.010 6 C -0.804 4.804 7 S 2.792 3.208 8 O -0.976 6.976 9 O -0.963 6.963 10 N -0.757 5.757 11 C -0.067 4.067 12 C -0.077 4.077 13 C -0.149 4.149 14 C -0.202 4.202 15 C 0.069 3.931 16 C -0.524 4.524 17 H 0.099 0.901 18 C -0.176 4.176 19 N -0.432 5.432 20 Si 0.796 3.204 21 H -0.186 1.186 22 H -0.191 1.191 23 H -0.180 1.180 24 C -0.250 4.250 25 C -0.116 4.116 26 C -0.023 4.023 27 C -0.150 4.150 28 C -0.163 4.163 29 H 0.142 0.858 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.194 0.806 33 H 0.181 0.819 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.102 0.898 40 H 0.125 0.875 41 H 0.147 0.853 42 H 0.150 0.850 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.949 -6.366 4.884 20.578 hybrid contribution 0.480 -0.728 -0.512 1.012 sum -18.469 -7.094 4.373 20.262 Atomic orbital electron populations 1.23543 0.75541 1.06298 1.02995 1.86107 1.24204 1.25744 1.86954 1.19183 0.91595 0.85461 0.90626 1.21663 1.02115 0.90902 1.09050 1.20971 0.91103 0.99835 0.89092 1.30538 1.06188 1.19928 1.23721 1.01519 0.72842 0.74293 0.72159 1.93576 1.36910 1.86452 1.80620 1.93511 1.67487 1.63131 1.72203 1.54501 1.25212 1.66215 1.29734 1.21899 0.87323 0.96051 1.01401 1.16895 0.92469 0.98689 0.99618 1.20657 0.97955 0.96329 0.99938 1.20771 0.98137 1.01555 0.99715 1.17941 0.92843 0.90646 0.91702 1.19755 1.04953 1.23607 1.04062 0.90119 1.26827 0.97421 0.96523 0.96821 1.69990 1.28083 1.28875 1.16220 0.85307 0.78180 0.77772 0.79163 1.18593 1.19063 1.17993 1.20741 1.00289 0.99391 1.04616 1.20331 0.97388 0.98173 0.95731 1.20760 0.99795 0.90899 0.90822 1.19565 0.92016 0.96255 1.07151 1.20682 0.98851 0.93455 1.03338 0.85764 0.90849 0.91038 0.80637 0.81920 0.91178 0.88788 0.89201 0.87559 0.87906 0.89831 0.87481 0.85271 0.85031 0.90031 0.90052 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.32 -6.00 9.54 -92.45 -0.88 -6.88 16 3 C 0.18 4.15 6.66 22.51 0.15 4.30 16 4 C -0.22 -4.32 9.04 22.37 0.20 -4.12 16 5 C 0.01 0.22 9.51 22.25 0.21 0.43 16 6 C -0.71 -22.29 5.94 22.28 0.13 -22.16 16 7 S 2.70 98.61 5.09 -56.49 -0.29 98.32 16 8 O -0.99 -44.60 14.37 -128.00 -1.84 -46.44 16 9 O -0.97 -35.00 16.53 -128.00 -2.12 -37.11 16 10 N -0.93 -33.33 3.37 -360.37 -1.21 -34.54 16 11 C 0.08 1.99 9.25 127.77 1.18 3.17 16 12 C 0.02 0.76 6.07 38.67 0.23 0.99 16 13 C -0.13 -6.31 8.37 22.15 0.19 -6.13 16 14 C -0.18 -9.91 8.74 22.48 0.20 -9.72 16 15 C 0.07 3.91 5.63 -21.27 -0.12 3.79 16 16 C -0.50 -26.68 8.98 23.38 0.21 -26.47 16 17 H 0.08 4.15 7.99 -2.91 -0.02 4.12 16 18 C 0.04 2.12 4.94 85.23 0.42 2.54 16 19 N -0.81 -42.84 11.17 21.82 0.24 -42.59 16 20 Si 0.98 37.79 29.64 68.60 2.03 39.82 16 21 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 22 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 23 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 24 C -0.23 -11.20 9.74 22.48 0.22 -10.98 16 25 C -0.09 -4.10 9.06 22.15 0.20 -3.89 16 26 C 0.00 -0.11 8.30 22.25 0.18 0.07 16 27 C -0.15 -4.13 5.89 -19.77 -0.12 -4.25 16 28 C -0.11 -2.57 9.79 71.24 0.70 -1.87 16 29 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.48 7.66 -2.39 -0.02 0.46 16 31 H 0.07 0.51 7.66 -2.39 -0.02 0.49 16 32 H 0.18 1.98 6.30 -2.91 -0.02 1.96 16 33 H 0.16 3.00 7.74 -2.91 -0.02 2.98 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.09 1.84 7.82 -2.38 -0.02 1.83 16 36 H 0.09 2.11 7.54 -2.38 -0.02 2.09 16 37 H 0.11 4.90 3.25 -2.91 -0.01 4.90 16 38 H 0.10 5.82 6.02 -2.91 -0.02 5.80 16 39 H 0.29 13.86 8.30 -92.70 -0.77 13.09 16 40 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 41 H 0.13 4.56 7.18 -2.92 -0.02 4.54 16 42 H 0.13 4.71 5.85 -2.91 -0.02 4.69 16 43 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.08 1.76 7.53 -2.39 -0.02 1.74 16 45 H 0.06 1.66 8.09 -2.39 -0.02 1.64 16 Total: -1.00 -72.87 378.18 2.27 -70.60 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: 1.03 Total: 31.92 kcal Atomic # 6 Polarization: -78.40 SS G_CDS: 5.30 Total: -73.10 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -0.97 Total: -77.14 kcal Atomic # 8 Polarization: -85.59 SS G_CDS: -4.84 Total: -90.43 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 2.03 Total: 39.82 kcal Atomic # 16 Polarization: 98.61 SS G_CDS: -0.29 Total: 98.32 kcal Total: -72.87 2.27 -70.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224647579.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.695 kcal (2) G-P(sol) polarization free energy of solvation -72.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds