Wall clock time and date at job start Fri Apr 10 2020 14:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35972 * 116.99834 * 2 1 4 4 C 1.38555 * 120.08212 * 359.97438 * 3 2 1 5 5 C 1.38245 * 120.01068 * 179.97438 * 4 3 2 6 6 C 1.38277 * 120.18223 * 0.02562 * 5 4 3 7 7 C 1.38198 * 120.16221 * 359.97438 * 6 5 4 8 8 C 1.38726 * 119.98475 * 359.97438 * 7 6 5 9 9 N 1.40128 * 120.08547 * 179.97438 * 8 7 6 10 10 C 1.46500 * 119.99752 * 90.00166 * 9 8 7 11 11 C 1.50700 * 109.47223 * 89.99706 * 10 9 8 12 12 H 1.08000 * 119.99753 * 359.97438 * 11 10 9 13 13 C 1.37869 * 120.00311 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00341 * 180.02562 * 13 11 10 15 15 Si 1.86805 * 119.99939 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.46944 * 90.00295 * 15 13 11 17 17 H 1.48502 * 109.47176 * 210.00069 * 15 13 11 18 18 H 1.48497 * 109.47125 * 330.00459 * 15 13 11 19 19 C 1.34776 * 120.00153 * 270.00134 * 9 8 7 20 20 O 1.21292 * 119.99672 * 180.02562 * 19 9 8 21 21 C 1.50696 * 119.99809 * 0.02562 * 19 9 8 22 22 S 1.81403 * 109.47054 * 180.02562 * 21 19 9 23 23 C 1.76201 * 103.00155 * 180.02562 * 22 21 19 24 24 C 1.38931 * 120.05269 * 359.72216 * 23 22 21 25 25 C 1.38099 * 119.94348 * 179.72275 * 24 23 22 26 26 C 1.38477 * 120.05445 * 0.55325 * 25 24 23 27 27 F 1.35103 * 119.95005 * 179.70138 * 26 25 24 28 28 C 1.38485 * 120.10930 * 359.72337 * 26 25 24 29 29 C 1.38100 * 120.05169 * 359.97438 * 28 26 25 30 30 H 1.08999 * 109.47087 * 60.00405 * 1 2 3 31 31 H 1.09003 * 109.46695 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47147 * 300.00031 * 1 2 3 33 33 H 1.07999 * 119.99451 * 0.25240 * 4 3 2 34 34 H 1.07997 * 119.90771 * 179.97438 * 5 4 3 35 35 H 1.07996 * 119.91752 * 179.97438 * 6 5 4 36 36 H 1.07999 * 120.00774 * 179.97438 * 7 6 5 37 37 H 1.08993 * 109.47484 * 209.99600 * 10 9 8 38 38 H 1.09001 * 109.47474 * 330.00028 * 10 9 8 39 39 H 0.97009 * 120.00608 * 180.02562 * 14 13 11 40 40 H 1.09000 * 109.47154 * 299.99961 * 21 19 9 41 41 H 1.08997 * 109.47177 * 60.00321 * 21 19 9 42 42 H 1.08000 * 120.03113 * 0.02562 * 24 23 22 43 43 H 1.08002 * 119.97446 * 180.25301 * 25 24 23 44 44 H 1.07997 * 119.97215 * 179.97438 * 28 26 25 45 45 H 1.07995 * 120.02511 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2934 2.3746 -0.0005 5 6 1.9225 3.6056 0.0000 6 6 3.3032 3.6807 0.0005 7 6 4.0614 2.5253 0.0011 8 6 3.4372 1.2864 0.0016 9 7 4.2040 0.1135 0.0016 10 6 4.6052 -0.4993 1.2704 11 6 3.5535 -1.4868 1.7061 12 1 2.6740 -1.6420 1.0988 13 6 3.7136 -2.1912 2.8804 14 7 2.7960 -3.0534 3.2603 15 14 5.2345 -1.9221 3.9311 16 1 4.9745 -0.8353 4.9091 17 1 5.5616 -3.1748 4.6585 18 1 6.3764 -1.5423 3.0610 19 6 4.5723 -0.4508 -1.1656 20 8 5.2356 -1.4663 -1.1655 21 6 4.1601 0.1799 -2.4706 22 16 4.8038 -0.8077 -3.8494 23 6 4.2316 0.0695 -5.2664 24 6 3.4726 1.2227 -5.1111 25 6 3.0301 1.9116 -6.2232 26 6 3.3326 1.4475 -7.4923 27 9 2.8935 2.1198 -8.5789 28 6 4.0842 0.2950 -7.6497 29 6 4.5342 -0.3939 -6.5407 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2148 2.3195 0.0032 34 1 1.3339 4.5111 -0.0008 35 1 3.7902 4.6446 0.0005 36 1 5.1397 2.5868 0.0011 37 1 5.5563 -1.0154 1.1399 38 1 4.7132 0.2751 2.0298 39 1 2.9085 -3.5488 4.0868 40 1 3.0722 0.2178 -2.5282 41 1 4.5625 1.1911 -2.5286 42 1 3.2329 1.5829 -4.1216 43 1 2.4434 2.8105 -6.1031 44 1 4.3185 -0.0652 -8.6405 45 1 5.1200 -1.2929 -6.6639 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002620488.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:46 Heat of formation + Delta-G solvation = -62.411217 kcal Electronic energy + Delta-G solvation = -31544.003000 eV Core-core repulsion = 27146.708254 eV Total energy + Delta-G solvation = -4397.294746 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 375.109 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.88916 -41.69746 -40.24361 -39.79178 -38.32222 -36.57817 -34.71122 -32.62017 -31.84820 -31.51275 -31.15133 -30.70866 -29.05688 -28.00755 -24.60693 -24.08239 -23.81529 -23.67666 -23.01664 -20.77802 -19.41382 -19.08195 -18.75414 -18.38613 -18.14103 -17.56082 -17.23196 -17.17695 -16.60145 -16.48758 -16.35791 -16.04196 -15.90363 -15.58719 -15.40833 -15.20182 -14.80837 -14.74279 -14.51399 -14.34486 -14.24858 -14.11601 -13.77292 -13.58190 -13.47681 -13.21853 -13.01591 -12.91910 -12.55966 -12.53118 -12.13526 -12.08427 -11.96188 -11.92111 -11.62374 -11.27863 -11.14173 -10.77774 -10.61251 -10.19346 -9.82569 -9.71757 -9.05916 -8.46249 -8.27163 -6.29313 -0.04549 0.17343 0.18256 0.26561 0.51398 1.28260 1.29600 1.34150 1.43642 1.49406 2.12904 2.32470 2.45422 2.49205 2.77868 3.04977 3.24006 3.37388 3.68123 3.83723 3.85209 3.97777 4.03503 4.06829 4.18908 4.27652 4.30196 4.38224 4.39188 4.51610 4.58517 4.65756 4.71248 4.72323 4.85513 4.86404 4.91290 5.06821 5.09737 5.15915 5.36235 5.37496 5.50994 5.52933 5.57868 5.78191 5.89468 6.31665 6.40377 6.67210 6.80163 7.14667 7.33451 8.89150 Molecular weight = 375.11amu Principal moments of inertia in cm(-1) A = 0.010514 B = 0.002959 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.442426 B = 9460.860064 C =10733.436588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.327 6.327 3 C 0.119 3.881 4 C -0.208 4.208 5 C -0.065 4.065 6 C -0.143 4.143 7 C -0.084 4.084 8 C 0.062 3.938 9 N -0.538 5.538 10 C 0.229 3.771 11 C -0.522 4.522 12 H 0.054 0.946 13 C 0.013 3.987 14 N -0.944 5.944 15 Si 0.935 3.065 16 H -0.257 1.257 17 H -0.283 1.283 18 H -0.255 1.255 19 C 0.528 3.472 20 O -0.565 6.565 21 C -0.119 4.119 22 S -0.069 6.069 23 C -0.113 4.113 24 C -0.112 4.112 25 C -0.128 4.128 26 C 0.076 3.924 27 F -0.144 7.144 28 C -0.128 4.128 29 C -0.078 4.078 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.149 0.851 34 H 0.164 0.836 35 H 0.162 0.838 36 H 0.139 0.861 37 H 0.026 0.974 38 H 0.040 0.960 39 H 0.265 0.735 40 H 0.118 0.882 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.160 0.840 44 H 0.163 0.837 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.464 19.065 -17.083 25.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.240 6.240 3 C 0.072 3.928 4 C -0.227 4.227 5 C -0.083 4.083 6 C -0.162 4.162 7 C -0.104 4.104 8 C -0.029 4.029 9 N -0.265 5.265 10 C 0.108 3.892 11 C -0.561 4.561 12 H 0.072 0.928 13 C -0.184 4.184 14 N -0.585 5.585 15 Si 0.758 3.242 16 H -0.182 1.182 17 H -0.208 1.208 18 H -0.180 1.180 19 C 0.316 3.684 20 O -0.444 6.444 21 C -0.270 4.270 22 S 0.175 5.825 23 C -0.227 4.227 24 C -0.136 4.136 25 C -0.148 4.148 26 C 0.054 3.946 27 F -0.122 7.122 28 C -0.149 4.149 29 C -0.102 4.102 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.167 0.833 34 H 0.181 0.819 35 H 0.180 0.820 36 H 0.157 0.843 37 H 0.044 0.956 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.137 0.863 41 H 0.158 0.842 42 H 0.159 0.841 43 H 0.177 0.823 44 H 0.180 0.820 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.406 17.165 -16.743 24.019 hybrid contribution -0.760 0.412 0.843 1.207 sum -2.165 17.577 -15.900 23.800 Atomic orbital electron populations 1.23199 0.77440 1.04170 1.02257 1.86374 1.22658 1.27232 1.87750 1.19759 0.91908 0.85617 0.95553 1.21479 1.01025 0.91498 1.08741 1.21425 0.94903 0.97299 0.94629 1.21289 0.93887 0.98223 1.02787 1.21404 1.01051 0.90176 0.97730 1.17413 0.87388 0.86678 1.11379 1.45079 1.50985 1.24538 1.05919 1.19445 0.95350 0.93130 0.81234 1.21633 1.06148 1.21627 1.06697 0.92810 1.25701 0.99314 0.94540 0.98891 1.70036 1.36576 1.27634 1.24278 0.85908 0.80499 0.78414 0.79374 1.18173 1.20846 1.17954 1.20062 0.79492 0.83753 0.85123 1.90695 1.41045 1.25392 1.87254 1.23618 1.06219 1.04107 0.93068 1.86448 1.66950 1.34881 0.94177 1.22205 1.03129 0.99614 0.97716 1.21218 0.98122 0.94253 0.99974 1.21247 1.01569 1.01825 0.90160 1.17861 0.99930 0.93498 0.83263 1.91493 1.87897 1.79567 1.53290 1.21286 0.98455 0.94320 1.00819 1.20781 0.99726 1.00426 0.89246 0.90053 0.89350 0.92064 0.83303 0.81860 0.82034 0.84346 0.95574 0.94237 0.92630 0.86344 0.84192 0.84099 0.82277 0.81984 0.83426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.66 9.81 113.37 1.11 1.78 16 2 O -0.33 -12.67 8.57 -93.24 -0.80 -13.47 16 3 C 0.12 3.85 6.70 22.60 0.15 4.00 16 4 C -0.21 -4.69 9.04 22.35 0.20 -4.48 16 5 C -0.06 -1.07 10.04 22.28 0.22 -0.85 16 6 C -0.14 -2.47 10.04 22.27 0.22 -2.24 16 7 C -0.08 -2.07 9.96 22.38 0.22 -1.85 16 8 C 0.06 2.09 3.94 38.18 0.15 2.24 16 9 N -0.54 -22.82 2.24 -634.86 -1.42 -24.25 16 10 C 0.23 11.56 4.22 85.63 0.36 11.92 16 11 C -0.52 -31.12 9.82 25.60 0.25 -30.87 16 12 H 0.05 3.55 6.46 -2.91 -0.02 3.53 16 13 C 0.01 0.77 5.47 84.65 0.46 1.23 16 14 N -0.94 -60.26 13.96 21.44 0.30 -59.96 16 15 Si 0.93 45.31 27.47 68.60 1.88 47.19 16 16 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 17 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 18 H -0.26 -11.92 6.54 99.48 0.65 -11.27 16 19 C 0.53 22.28 7.67 87.66 0.67 22.95 16 20 O -0.56 -28.94 15.45 -3.07 -0.05 -28.99 16 21 C -0.12 -3.62 3.62 71.23 0.26 -3.37 16 22 S -0.07 -2.09 21.06 -56.49 -1.19 -3.28 16 23 C -0.11 -2.61 6.11 22.60 0.14 -2.47 16 24 C -0.11 -2.18 9.36 22.40 0.21 -1.97 16 25 C -0.13 -2.16 10.02 22.29 0.22 -1.94 16 26 C 0.08 1.38 7.30 22.39 0.16 1.55 16 27 F -0.14 -2.71 17.26 44.97 0.78 -1.93 16 28 C -0.13 -2.15 10.02 22.30 0.22 -1.93 16 29 C -0.08 -1.53 9.79 22.40 0.22 -1.31 16 30 H 0.08 1.62 7.67 -2.39 -0.02 1.60 16 31 H 0.09 2.56 8.14 -2.39 -0.02 2.55 16 32 H 0.06 1.55 7.66 -2.39 -0.02 1.53 16 33 H 0.15 2.65 6.30 -2.91 -0.02 2.64 16 34 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 35 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 36 H 0.14 3.08 8.06 -2.91 -0.02 3.05 16 37 H 0.03 1.41 6.48 -2.39 -0.02 1.40 16 38 H 0.04 1.87 7.48 -2.39 -0.02 1.85 16 39 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16 40 H 0.12 3.42 7.69 -2.39 -0.02 3.40 16 41 H 0.14 3.33 7.71 -2.39 -0.02 3.31 16 42 H 0.14 2.45 5.88 -2.91 -0.02 2.43 16 43 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 44 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 45 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -81.60 397.81 5.94 -75.66 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.97 Total: 16.64 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 5.47 Total: -7.62 kcal Atomic # 7 Polarization: -83.08 SS G_CDS: -1.12 Total: -84.21 kcal Atomic # 8 Polarization: -41.62 SS G_CDS: -0.85 Total: -42.46 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.78 Total: -1.93 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.88 Total: 47.19 kcal Atomic # 16 Polarization: -2.09 SS G_CDS: -1.19 Total: -3.28 kcal Total: -81.60 5.94 -75.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002620488.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.249 kcal (2) G-P(sol) polarization free energy of solvation -81.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds