Wall clock time and date at job start Fri Apr 10 2020 14:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86794 * 120.00304 * 2 1 4 4 H 1.48498 * 109.47093 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47186 * 299.99971 * 3 2 1 6 6 H 1.48496 * 109.47045 * 59.99668 * 3 2 1 7 7 C 1.38657 * 119.99406 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99436 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00491 * 0.02562 * 7 2 1 10 10 C 1.35747 * 117.00162 * 185.43270 * 9 7 2 11 11 C 1.38953 * 120.03154 * 186.06177 * 10 9 7 12 12 C 1.38132 * 120.07644 * 179.97438 * 11 10 9 13 13 C 1.38193 * 120.14222 * 359.72479 * 12 11 10 14 14 C 1.38957 * 120.05865 * 0.55319 * 13 12 11 15 15 N 1.39824 * 120.03511 * 179.72201 * 14 13 12 16 16 C 1.34774 * 119.99848 * 329.84245 * 15 14 13 17 17 O 1.21734 * 120.00169 * 353.62381 * 16 15 14 18 18 C 1.46213 * 120.00081 * 173.62157 * 16 15 14 19 19 C 1.34997 * 120.00371 * 172.61097 * 18 16 15 20 20 C 1.46994 * 119.99934 * 348.72257 * 19 18 16 21 21 C 1.39971 * 120.11491 * 312.20871 * 20 19 18 22 22 C 1.37656 * 119.88485 * 180.02562 * 21 20 19 23 23 C 1.39017 * 120.11864 * 0.27443 * 22 21 20 24 24 O 1.35736 * 119.88784 * 179.69973 * 23 22 21 25 25 C 1.42902 * 116.99972 * 180.02562 * 24 23 22 26 26 F 1.39909 * 109.47039 * 300.00178 * 25 24 23 27 27 F 1.39891 * 109.47306 * 60.00139 * 25 24 23 28 28 C 1.39021 * 120.22467 * 359.45026 * 23 22 21 29 29 C 1.37662 * 120.11453 * 0.55015 * 28 23 22 30 30 C 1.38731 * 120.03041 * 6.03833 * 10 9 7 31 31 H 0.97002 * 119.99709 * 0.02562 * 1 2 3 32 32 H 1.07994 * 119.96321 * 359.95430 * 11 10 9 33 33 H 1.07993 * 119.92969 * 180.02562 * 12 11 10 34 34 H 1.07993 * 119.97499 * 180.30006 * 13 12 11 35 35 H 0.96998 * 120.00038 * 149.84966 * 15 14 13 36 36 H 1.08004 * 119.99568 * 352.61933 * 18 16 15 37 37 H 1.08001 * 120.00467 * 168.71454 * 19 18 16 38 38 H 1.08003 * 120.05654 * 0.02562 * 21 20 19 39 39 H 1.08011 * 119.94034 * 179.97438 * 22 21 20 40 40 H 1.09005 * 109.47346 * 180.02562 * 25 24 23 41 41 H 1.08004 * 119.94473 * 180.25521 * 28 23 22 42 42 H 1.07998 * 120.06156 * 179.75255 * 29 28 23 43 43 H 1.08000 * 120.06857 * 0.04416 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.7096 1.3462 0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8909 2.3964 1.2124 7 6 2.0087 -1.2009 0.0005 8 1 3.0888 -1.2009 0.0001 9 8 1.3346 -2.3685 0.0005 10 6 2.0691 -3.5043 0.1156 11 6 1.4547 -4.7449 -0.0036 12 6 2.2013 -5.9012 0.1128 13 6 3.5621 -5.8284 0.3424 14 6 4.1815 -4.5909 0.4683 15 7 5.5574 -4.5179 0.7063 16 6 6.1755 -5.4994 1.3926 17 8 5.5213 -6.3892 1.9047 18 6 7.6319 -5.4956 1.5220 19 6 8.2401 -6.3896 2.3303 20 6 7.4428 -7.1974 3.2644 21 6 6.4789 -6.5867 4.0750 22 6 5.7352 -7.3476 4.9484 23 6 5.9441 -8.7196 5.0303 24 8 5.2124 -9.4646 5.8975 25 6 5.4782 -10.8682 5.9314 26 9 5.2386 -11.4189 4.6678 27 9 6.8142 -11.0814 6.2873 28 6 6.8962 -9.3320 4.2233 29 6 7.6452 -8.5801 3.3466 30 6 3.4340 -3.4275 0.3518 31 1 -0.4850 0.8401 -0.0004 32 1 0.3922 -4.8052 -0.1871 33 1 1.7215 -6.8641 0.0193 34 1 4.1441 -6.7341 0.4281 35 1 6.0670 -3.7608 0.3777 36 1 8.2211 -4.7775 0.9710 37 1 9.3125 -6.5114 2.2907 38 1 6.3189 -5.5202 4.0153 39 1 4.9915 -6.8772 5.5746 40 1 4.8263 -11.3439 6.6642 41 1 7.0519 -10.3988 4.2878 42 1 8.3874 -9.0561 2.7230 43 1 3.9136 -2.4644 0.4451 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049294167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:43 Heat of formation + Delta-G solvation = -117.990868 kcal Electronic energy + Delta-G solvation = -32692.485570 eV Core-core repulsion = 27726.567534 eV Total energy + Delta-G solvation = -4965.918036 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.111 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -49.67358 -47.65865 -40.51972 -39.89285 -38.74704 -37.70445 -36.37445 -34.21894 -33.66024 -32.23619 -31.20782 -29.91147 -29.09945 -28.41328 -26.47650 -25.34351 -24.16214 -23.02479 -22.31434 -21.81802 -20.81798 -19.59486 -19.26275 -18.38173 -18.22835 -18.02969 -17.62806 -17.12981 -16.33973 -15.72550 -15.43314 -15.19579 -15.02547 -14.89165 -14.64950 -14.38859 -14.24972 -14.20526 -14.01078 -13.95707 -13.85939 -13.62337 -13.55264 -13.38812 -13.06589 -12.92556 -12.71239 -12.34155 -12.12654 -11.76050 -11.63262 -11.54659 -11.15529 -11.10969 -10.96208 -10.78606 -10.45022 -9.92748 -9.84107 -9.64782 -9.43167 -8.97513 -8.80449 -8.05055 -7.68897 -7.12656 -6.45273 -4.04883 0.55977 1.32032 1.58272 2.14532 2.29091 2.41870 3.10468 3.11330 3.14401 3.16989 3.34300 3.36285 3.64218 3.95153 3.96266 4.30969 4.51771 4.60374 4.62663 4.71103 4.75944 5.05615 5.10218 5.17227 5.26522 5.28630 5.44377 5.68842 5.76434 5.82684 5.95962 6.02069 6.04420 6.09382 6.21674 6.26309 6.30671 6.43645 6.45134 6.65317 6.93817 6.99431 7.00626 7.13487 7.33472 7.43119 7.74210 7.82988 7.99124 8.34742 9.00252 9.71405 10.72971 Molecular weight = 375.11amu Principal moments of inertia in cm(-1) A = 0.013665 B = 0.001965 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.612146 B =14243.934502 C =14951.405252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.090 0.910 9 O -0.177 6.177 10 C 0.169 3.831 11 C -0.202 4.202 12 C -0.063 4.063 13 C -0.206 4.206 14 C 0.182 3.818 15 N -0.663 5.663 16 C 0.533 3.467 17 O -0.506 6.506 18 C -0.209 4.209 19 C -0.021 4.021 20 C -0.089 4.089 21 C -0.014 4.014 22 C -0.136 4.136 23 C 0.112 3.888 24 O -0.320 6.320 25 C 0.411 3.589 26 F -0.198 7.198 27 F -0.201 7.201 28 C -0.199 4.199 29 C -0.064 4.064 30 C -0.259 4.259 31 H 0.269 0.731 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.122 0.878 35 H 0.406 0.594 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.125 0.875 39 H 0.132 0.868 40 H 0.180 0.820 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.857 -17.274 9.347 26.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.467 4.467 8 H 0.107 0.893 9 O -0.081 6.081 10 C 0.115 3.885 11 C -0.221 4.221 12 C -0.082 4.082 13 C -0.227 4.227 14 C 0.089 3.911 15 N -0.307 5.307 16 C 0.322 3.678 17 O -0.382 6.382 18 C -0.230 4.230 19 C -0.040 4.040 20 C -0.089 4.089 21 C -0.032 4.032 22 C -0.155 4.155 23 C 0.069 3.931 24 O -0.238 6.238 25 C 0.321 3.679 26 F -0.180 7.180 27 F -0.183 7.183 28 C -0.218 4.218 29 C -0.082 4.082 30 C -0.281 4.281 31 H 0.079 0.921 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.140 0.860 35 H 0.241 0.759 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.143 0.857 39 H 0.150 0.850 40 H 0.197 0.803 41 H 0.148 0.852 42 H 0.144 0.856 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 16.883 -17.658 9.783 26.317 hybrid contribution 0.926 1.101 -0.438 1.504 sum 17.809 -16.557 9.345 26.050 Atomic orbital electron populations 1.70049 1.05924 1.27505 1.46240 1.25282 0.95840 0.98790 0.96654 0.85661 0.79022 0.80525 0.78258 1.19221 1.20156 1.20177 1.21303 0.91647 0.80890 1.52873 0.89251 1.84020 1.33945 1.11377 1.78717 1.19072 0.89510 0.88084 0.91883 1.20248 1.00125 0.90030 1.11742 1.20534 0.93249 0.96862 0.97535 1.20604 0.95135 0.96016 1.10929 1.17408 0.81670 0.94026 0.98005 1.43473 1.07875 1.24374 1.54951 1.18475 0.88437 0.82282 0.78594 1.90922 1.66634 1.35649 1.45043 1.23023 0.93805 1.02243 1.03904 1.22317 0.99074 0.91439 0.91194 1.18827 0.98458 0.93449 0.98193 1.20894 0.91152 0.99504 0.91666 1.20242 1.02606 0.90116 1.02496 1.18973 0.92170 0.91226 0.90754 1.86580 1.60021 1.18370 1.58837 1.23346 0.80799 0.80467 0.83277 1.93112 1.94078 1.85606 1.45163 1.93087 1.39010 1.94431 1.91730 1.21275 0.99635 1.00557 1.00332 1.20889 0.98264 0.92459 0.96630 1.20789 0.94463 0.97205 1.15612 0.92085 0.86469 0.86744 0.86014 0.75898 0.84684 0.84493 0.85748 0.84969 0.80327 0.85217 0.85587 0.85313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.18 13.67 55.48 0.76 -24.42 16 2 C 0.04 1.05 5.49 -17.51 -0.10 0.95 16 3 Si 0.94 20.23 29.55 -169.99 -5.02 15.21 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.39 -10.78 9.44 30.89 0.29 -10.49 16 8 H 0.09 2.27 5.30 -52.49 -0.28 1.99 16 9 O -0.18 -5.04 9.76 0.05 0.00 -5.04 16 10 C 0.17 4.10 6.64 -39.13 -0.26 3.84 16 11 C -0.20 -4.38 9.99 -39.36 -0.39 -4.77 16 12 C -0.06 -1.21 10.03 -39.64 -0.40 -1.61 16 13 C -0.21 -3.99 8.66 -39.33 -0.34 -4.33 16 14 C 0.18 3.46 6.33 -83.75 -0.53 2.93 16 15 N -0.66 -9.76 5.34 -11.19 -0.06 -9.82 16 16 C 0.53 7.50 6.66 -13.06 -0.09 7.41 16 17 O -0.51 -8.64 10.03 5.16 0.05 -8.58 16 18 C -0.21 -2.03 9.92 -37.53 -0.37 -2.40 16 19 C -0.02 -0.19 9.78 -37.19 -0.36 -0.55 16 20 C -0.09 -1.03 4.34 -105.05 -0.46 -1.49 16 21 C -0.01 -0.18 6.78 -39.15 -0.27 -0.45 16 22 C -0.14 -1.78 9.97 -39.51 -0.39 -2.18 16 23 C 0.11 1.42 6.49 -39.00 -0.25 1.17 16 24 O -0.32 -3.52 10.42 -18.92 -0.20 -3.71 16 25 C 0.41 3.14 5.98 101.05 0.60 3.75 16 26 F -0.20 -1.93 15.55 2.25 0.04 -1.89 16 27 F -0.20 -1.74 15.58 2.25 0.04 -1.70 16 28 C -0.20 -2.37 8.23 -39.50 -0.33 -2.69 16 29 C -0.06 -0.71 9.79 -39.14 -0.38 -1.10 16 30 C -0.26 -5.58 9.03 -39.20 -0.35 -5.94 16 31 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 33 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 34 H 0.12 2.34 6.20 -52.49 -0.33 2.01 16 35 H 0.41 4.69 8.78 -40.82 -0.36 4.33 16 36 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 37 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 38 H 0.12 1.59 7.43 -52.48 -0.39 1.20 16 39 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 40 H 0.18 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.13 1.41 5.07 -52.48 -0.27 1.14 16 42 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 43 H 0.13 2.72 5.72 -52.49 -0.30 2.42 16 LS Contribution 378.08 15.07 5.70 5.70 Total: -1.00 -34.98 378.08 -7.09 -42.07 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -4.01 Total: 10.14 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -4.38 Total: -17.95 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.70 Total: -34.24 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.14 Total: -17.34 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.07 Total: -3.59 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.98 -7.09 -42.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049294167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.917 kcal (2) G-P(sol) polarization free energy of solvation -34.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds