Wall clock time and date at job start Fri Apr 10 2020 14:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86794 * 120.00304 * 2 1 4 4 H 1.48498 * 109.47093 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47186 * 299.99971 * 3 2 1 6 6 H 1.48496 * 109.47045 * 59.99668 * 3 2 1 7 7 C 1.38657 * 119.99406 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99436 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00491 * 0.02562 * 7 2 1 10 10 C 1.35747 * 117.00162 * 185.43270 * 9 7 2 11 11 C 1.38953 * 120.03154 * 186.06177 * 10 9 7 12 12 C 1.38132 * 120.07644 * 179.97438 * 11 10 9 13 13 C 1.38193 * 120.14222 * 359.72479 * 12 11 10 14 14 C 1.38957 * 120.05865 * 0.55319 * 13 12 11 15 15 N 1.39824 * 120.03511 * 179.72201 * 14 13 12 16 16 C 1.34774 * 119.99848 * 329.84245 * 15 14 13 17 17 O 1.21734 * 120.00169 * 353.62381 * 16 15 14 18 18 C 1.46213 * 120.00081 * 173.62157 * 16 15 14 19 19 C 1.34997 * 120.00371 * 172.61097 * 18 16 15 20 20 C 1.46994 * 119.99934 * 348.72257 * 19 18 16 21 21 C 1.39971 * 120.11491 * 312.20871 * 20 19 18 22 22 C 1.37656 * 119.88485 * 180.02562 * 21 20 19 23 23 C 1.39017 * 120.11864 * 0.27443 * 22 21 20 24 24 O 1.35736 * 119.88784 * 179.69973 * 23 22 21 25 25 C 1.42902 * 116.99972 * 180.02562 * 24 23 22 26 26 F 1.39909 * 109.47039 * 300.00178 * 25 24 23 27 27 F 1.39891 * 109.47306 * 60.00139 * 25 24 23 28 28 C 1.39021 * 120.22467 * 359.45026 * 23 22 21 29 29 C 1.37662 * 120.11453 * 0.55015 * 28 23 22 30 30 C 1.38731 * 120.03041 * 6.03833 * 10 9 7 31 31 H 0.97002 * 119.99709 * 0.02562 * 1 2 3 32 32 H 1.07994 * 119.96321 * 359.95430 * 11 10 9 33 33 H 1.07993 * 119.92969 * 180.02562 * 12 11 10 34 34 H 1.07993 * 119.97499 * 180.30006 * 13 12 11 35 35 H 0.96998 * 120.00038 * 149.84966 * 15 14 13 36 36 H 1.08004 * 119.99568 * 352.61933 * 18 16 15 37 37 H 1.08001 * 120.00467 * 168.71454 * 19 18 16 38 38 H 1.08003 * 120.05654 * 0.02562 * 21 20 19 39 39 H 1.08011 * 119.94034 * 179.97438 * 22 21 20 40 40 H 1.09005 * 109.47346 * 180.02562 * 25 24 23 41 41 H 1.08004 * 119.94473 * 180.25521 * 28 23 22 42 42 H 1.07998 * 120.06156 * 179.75255 * 29 28 23 43 43 H 1.08000 * 120.06857 * 0.04416 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.7096 1.3462 0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8909 2.3964 1.2124 7 6 2.0087 -1.2009 0.0005 8 1 3.0888 -1.2009 0.0001 9 8 1.3346 -2.3685 0.0005 10 6 2.0691 -3.5043 0.1156 11 6 1.4547 -4.7449 -0.0036 12 6 2.2013 -5.9012 0.1128 13 6 3.5621 -5.8284 0.3424 14 6 4.1815 -4.5909 0.4683 15 7 5.5574 -4.5179 0.7063 16 6 6.1755 -5.4994 1.3926 17 8 5.5213 -6.3892 1.9047 18 6 7.6319 -5.4956 1.5220 19 6 8.2401 -6.3896 2.3303 20 6 7.4428 -7.1974 3.2644 21 6 6.4789 -6.5867 4.0750 22 6 5.7352 -7.3476 4.9484 23 6 5.9441 -8.7196 5.0303 24 8 5.2124 -9.4646 5.8975 25 6 5.4782 -10.8682 5.9314 26 9 5.2386 -11.4189 4.6678 27 9 6.8142 -11.0814 6.2873 28 6 6.8962 -9.3320 4.2233 29 6 7.6452 -8.5801 3.3466 30 6 3.4340 -3.4275 0.3518 31 1 -0.4850 0.8401 -0.0004 32 1 0.3922 -4.8052 -0.1871 33 1 1.7215 -6.8641 0.0193 34 1 4.1441 -6.7341 0.4281 35 1 6.0670 -3.7608 0.3777 36 1 8.2211 -4.7775 0.9710 37 1 9.3125 -6.5114 2.2907 38 1 6.3189 -5.5202 4.0153 39 1 4.9915 -6.8772 5.5746 40 1 4.8263 -11.3439 6.6642 41 1 7.0519 -10.3988 4.2878 42 1 8.3874 -9.0561 2.7230 43 1 3.9136 -2.4644 0.4451 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049294167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:41 Heat of formation + Delta-G solvation = -140.079687 kcal Electronic energy + Delta-G solvation = -32693.443413 eV Core-core repulsion = 27726.567534 eV Total energy + Delta-G solvation = -4966.875879 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.111 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -50.33332 -48.32765 -41.67804 -40.93590 -40.30544 -38.74019 -37.91812 -35.60462 -34.52265 -34.21314 -32.10220 -31.22163 -30.55023 -29.77740 -27.38302 -27.11796 -25.20443 -23.92255 -23.51069 -23.37252 -22.13261 -20.76028 -20.05069 -19.73156 -19.25232 -18.96221 -18.90381 -18.34793 -17.25046 -17.09491 -16.82425 -16.48467 -16.30914 -15.97507 -15.71473 -15.69138 -15.57044 -15.41479 -15.09665 -14.98567 -14.81296 -14.65307 -14.63823 -14.42331 -14.39914 -14.06729 -13.81993 -13.56874 -13.43070 -13.23119 -12.96359 -12.73084 -12.62872 -12.46858 -12.37671 -12.08072 -11.98954 -11.43638 -11.28167 -10.84081 -10.72369 -10.64356 -9.93087 -9.32668 -8.93458 -8.82001 -8.46070 -6.14753 -0.30315 0.38499 0.45519 0.69167 0.86350 1.36375 1.45160 1.54785 1.62701 2.15953 2.19413 2.28322 2.53463 2.75353 2.86303 3.18668 3.49270 3.49386 3.68168 3.72906 3.81411 3.82700 3.87785 4.13790 4.25036 4.30470 4.34318 4.45503 4.56109 4.58793 4.65255 4.77173 4.95148 4.99071 5.02775 5.11636 5.16689 5.17869 5.37158 5.42190 5.50061 5.57428 5.61842 5.68156 5.68494 6.02277 6.07390 6.19616 6.56136 6.98343 7.21457 7.78474 8.77344 Molecular weight = 375.11amu Principal moments of inertia in cm(-1) A = 0.013665 B = 0.001965 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.612146 B =14243.934502 C =14951.405252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.247 1.247 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.411 4.411 8 H 0.104 0.896 9 O -0.228 6.228 10 C 0.135 3.865 11 C -0.218 4.218 12 C -0.053 4.053 13 C -0.201 4.201 14 C 0.194 3.806 15 N -0.658 5.658 16 C 0.528 3.472 17 O -0.539 6.539 18 C -0.213 4.213 19 C -0.004 4.004 20 C -0.099 4.099 21 C -0.027 4.027 22 C -0.160 4.160 23 C 0.098 3.902 24 O -0.334 6.334 25 C 0.405 3.595 26 F -0.211 7.211 27 F -0.207 7.207 28 C -0.209 4.209 29 C -0.066 4.066 30 C -0.263 4.263 31 H 0.272 0.728 32 H 0.116 0.884 33 H 0.148 0.852 34 H 0.131 0.869 35 H 0.422 0.578 36 H 0.175 0.825 37 H 0.183 0.817 38 H 0.117 0.883 39 H 0.128 0.872 40 H 0.234 0.766 41 H 0.137 0.863 42 H 0.155 0.845 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.661 -18.373 9.345 29.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.222 4.222 3 Si 0.839 3.161 4 H -0.170 1.170 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.487 4.487 8 H 0.121 0.879 9 O -0.134 6.134 10 C 0.084 3.916 11 C -0.238 4.238 12 C -0.072 4.072 13 C -0.222 4.222 14 C 0.099 3.901 15 N -0.303 5.303 16 C 0.320 3.680 17 O -0.418 6.418 18 C -0.233 4.233 19 C -0.023 4.023 20 C -0.100 4.100 21 C -0.046 4.046 22 C -0.179 4.179 23 C 0.055 3.945 24 O -0.251 6.251 25 C 0.316 3.684 26 F -0.193 7.193 27 F -0.189 7.189 28 C -0.227 4.227 29 C -0.084 4.084 30 C -0.285 4.285 31 H 0.081 0.919 32 H 0.134 0.866 33 H 0.166 0.834 34 H 0.149 0.851 35 H 0.261 0.739 36 H 0.193 0.807 37 H 0.200 0.800 38 H 0.135 0.865 39 H 0.146 0.854 40 H 0.249 0.751 41 H 0.155 0.845 42 H 0.173 0.827 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 20.751 -18.800 9.782 29.661 hybrid contribution -0.151 1.084 -0.347 1.148 sum 20.601 -17.716 9.436 28.762 Atomic orbital electron populations 1.70200 1.08108 1.28729 1.48865 1.26621 0.96853 1.02822 0.95887 0.84517 0.78459 0.74750 0.78408 1.16983 1.19455 1.19646 1.21845 0.92522 0.81280 1.53026 0.87877 1.83986 1.35648 1.12546 1.81208 1.19586 0.90875 0.87898 0.93241 1.20442 1.00551 0.90166 1.12627 1.20888 0.93274 0.97360 0.95652 1.20873 0.95294 0.96459 1.09542 1.17424 0.83770 0.92937 0.95991 1.43501 1.06055 1.25604 1.55165 1.19305 0.90294 0.81127 0.77258 1.90917 1.67835 1.36839 1.46192 1.23098 0.90844 1.03830 1.05527 1.22728 1.00854 0.89499 0.89206 1.19162 0.98282 0.94137 0.98391 1.20960 0.91946 0.99274 0.92393 1.20387 1.03264 0.90910 1.03296 1.19129 0.92657 0.91377 0.91310 1.86564 1.60043 1.20040 1.58490 1.24247 0.81303 0.79127 0.83675 1.93080 1.94131 1.85609 1.46470 1.93068 1.39843 1.94301 1.91669 1.21490 0.99649 1.01089 1.00485 1.21269 0.98379 0.92379 0.96378 1.20821 0.93673 0.98245 1.15739 0.91877 0.86558 0.83399 0.85140 0.73949 0.80743 0.80023 0.86465 0.85386 0.75078 0.84530 0.82714 0.85237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.31 13.67 21.61 0.30 -56.02 16 2 C -0.02 -1.37 5.49 84.83 0.47 -0.91 16 3 Si 1.02 41.94 29.55 68.60 2.03 43.96 16 4 H -0.25 -9.14 7.11 99.48 0.71 -8.44 16 5 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 6 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 7 C -0.41 -23.51 9.44 67.92 0.64 -22.87 16 8 H 0.10 5.33 5.30 -2.91 -0.02 5.32 16 9 O -0.23 -13.67 9.76 -22.72 -0.22 -13.89 16 10 C 0.14 6.82 6.64 22.56 0.15 6.97 16 11 C -0.22 -9.71 9.99 22.42 0.22 -9.48 16 12 C -0.05 -2.00 10.03 22.23 0.22 -1.78 16 13 C -0.20 -7.50 8.66 22.43 0.19 -7.31 16 14 C 0.19 7.16 6.33 38.17 0.24 7.41 16 15 N -0.66 -17.95 5.34 -307.52 -1.64 -19.59 16 16 C 0.53 13.55 6.66 86.31 0.57 14.12 16 17 O -0.54 -17.57 10.03 -4.46 -0.04 -17.62 16 18 C -0.21 -3.25 9.92 23.60 0.23 -3.02 16 19 C 0.00 -0.05 9.78 23.82 0.23 0.18 16 20 C -0.10 -2.08 4.34 -20.14 -0.09 -2.16 16 21 C -0.03 -0.70 6.78 22.55 0.15 -0.54 16 22 C -0.16 -4.28 9.97 22.32 0.22 -4.05 16 23 C 0.10 2.48 6.49 22.64 0.15 2.63 16 24 O -0.33 -7.17 10.42 -90.60 -0.94 -8.11 16 25 C 0.41 5.59 5.98 113.37 0.68 6.27 16 26 F -0.21 -3.86 15.55 44.97 0.70 -3.16 16 27 F -0.21 -3.31 15.58 44.97 0.70 -2.60 16 28 C -0.21 -4.70 8.23 22.32 0.18 -4.52 16 29 C -0.07 -1.31 9.79 22.56 0.22 -1.09 16 30 C -0.26 -11.45 9.03 22.52 0.20 -11.25 16 31 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 32 H 0.12 5.06 8.06 -2.91 -0.02 5.04 16 33 H 0.15 4.50 8.06 -2.91 -0.02 4.47 16 34 H 0.13 4.74 6.20 -2.91 -0.02 4.73 16 35 H 0.42 8.62 8.78 -92.71 -0.81 7.81 16 36 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 37 H 0.18 0.91 8.06 -2.91 -0.02 0.89 16 38 H 0.12 3.00 7.43 -2.91 -0.02 2.98 16 39 H 0.13 3.31 8.06 -2.90 -0.02 3.28 16 40 H 0.23 0.55 8.14 -2.38 -0.02 0.53 16 41 H 0.14 2.79 5.07 -2.91 -0.01 2.78 16 42 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 43 H 0.13 5.51 5.72 -2.91 -0.02 5.49 16 Total: -1.00 -81.93 378.08 6.06 -75.86 By element: Atomic # 1 Polarization: 32.27 SS G_CDS: 0.29 Total: 32.56 kcal Atomic # 6 Polarization: -36.29 SS G_CDS: 4.90 Total: -31.39 kcal Atomic # 7 Polarization: -74.26 SS G_CDS: -1.35 Total: -75.61 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -1.21 Total: -39.62 kcal Atomic # 9 Polarization: -7.17 SS G_CDS: 1.40 Total: -5.77 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal Total: -81.93 6.06 -75.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049294167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.215 kcal (2) G-P(sol) polarization free energy of solvation -81.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds