Wall clock time and date at job start Fri Apr 10 2020 14:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31554 * 122.23060 * 2 1 4 4 C 1.29989 * 117.13647 * 180.02562 * 3 2 1 5 5 N 1.38747 * 125.36186 * 180.02562 * 4 3 2 6 6 C 1.34781 * 119.99635 * 179.97438 * 5 4 3 7 7 O 1.21513 * 120.00064 * 0.02562 * 6 5 4 8 8 C 1.48269 * 120.00038 * 179.97438 * 6 5 4 9 9 C 1.41740 * 126.81710 * 179.71216 * 8 6 5 10 10 C 1.37144 * 103.79746 * 179.97438 * 9 8 6 11 11 C 1.47013 * 126.85584 * 180.13263 * 10 9 8 12 12 C 1.36339 * 125.96429 * 180.28354 * 11 10 9 13 13 C 1.40701 * 106.72194 * 179.97438 * 12 11 10 14 14 C 1.34891 * 107.07854 * 359.97438 * 13 12 11 15 15 O 1.34224 * 108.73176 * 359.75565 * 14 13 12 16 16 O 1.34584 * 106.28752 * 0.34536 * 10 9 8 17 17 N 1.20871 * 111.70374 * 359.76562 * 16 10 9 18 18 S 1.76143 * 109.26862 * 0.02562 * 4 3 2 19 19 C 1.34695 * 122.22619 * 180.02562 * 2 1 3 20 20 S 1.76196 * 125.93090 * 359.71492 * 19 2 1 21 21 C 1.76207 * 100.00074 * 180.02562 * 20 19 2 22 22 H 1.08007 * 119.99400 * 359.97438 * 21 20 19 23 23 C 1.38438 * 120.00164 * 179.97438 * 21 20 19 24 24 N 1.31803 * 119.99971 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99836 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47078 * 89.99999 * 25 23 21 27 27 H 1.48496 * 109.47249 * 209.99877 * 25 23 21 28 28 H 1.48500 * 109.47280 * 330.00398 * 25 23 21 29 29 H 1.09008 * 109.47075 * 269.97592 * 1 2 3 30 30 H 1.08998 * 109.47117 * 29.96894 * 1 2 3 31 31 H 1.08998 * 109.47675 * 149.97639 * 1 2 3 32 32 H 0.96998 * 120.00147 * 0.02562 * 5 4 3 33 33 H 1.08005 * 128.10389 * 0.03514 * 9 8 6 34 34 H 1.07999 * 126.63923 * 359.93624 * 12 11 10 35 35 H 1.07989 * 126.46523 * 179.97438 * 13 12 11 36 36 H 1.07996 * 125.63493 * 180.02562 * 14 13 12 37 37 H 0.96995 * 119.99931 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2086 1.1128 0.0000 4 6 3.5033 0.9974 -0.0005 5 7 4.4036 2.0531 -0.0001 6 6 5.7290 1.8085 -0.0002 7 8 6.1354 0.6633 -0.0011 8 6 6.6911 2.9366 -0.0003 9 6 8.1057 2.8465 0.0053 10 6 8.5167 4.1549 0.0019 11 6 9.9033 4.6436 0.0025 12 6 10.2916 5.9505 0.0045 13 6 11.6986 5.9547 0.0049 14 6 12.0986 4.6665 0.0037 15 8 11.0125 3.8779 0.0080 16 8 7.3974 4.9022 0.0027 17 7 6.4021 4.2164 0.0015 18 16 3.9346 -0.7104 -0.0018 19 6 2.2252 -1.1394 -0.0005 20 16 1.5697 -2.7749 0.0059 21 6 3.0665 -3.7046 0.0024 22 1 4.0187 -3.1948 -0.0029 23 6 3.0220 -5.0882 0.0064 24 7 1.8600 -5.7102 0.0133 25 14 4.6089 -6.0737 0.0020 26 1 5.0357 -6.3310 1.4009 27 1 4.3867 -7.3668 -0.6935 28 1 5.6660 -5.3067 -0.7048 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5133 31 1 -0.3634 -0.8897 -0.5142 32 1 4.0791 2.9672 0.0010 33 1 8.7168 1.9560 0.0100 34 1 9.6445 6.8152 0.0050 35 1 12.3378 6.8251 0.0060 36 1 13.1235 4.3259 0.0041 37 1 1.8289 -6.6797 0.0157 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065625240.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:54:27 Heat of formation + Delta-G solvation = 94.176394 kcal Electronic energy + Delta-G solvation = -26965.518357 eV Core-core repulsion = 22738.708924 eV Total energy + Delta-G solvation = -4226.809432 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 377.034 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.55767 -43.10584 -40.19021 -38.58750 -34.99686 -34.57757 -33.90109 -33.12173 -32.85865 -30.56414 -29.31793 -27.19319 -26.06082 -25.77625 -23.93642 -23.42049 -22.20729 -21.91396 -20.96208 -19.85638 -19.03318 -18.37187 -18.01955 -17.72505 -17.09764 -16.77277 -16.57185 -15.87519 -15.54058 -15.47108 -15.13572 -14.90696 -14.36069 -14.05480 -14.02817 -13.50855 -13.33974 -13.23902 -13.00017 -12.72885 -12.23449 -12.19945 -11.90626 -11.42450 -11.28735 -11.22198 -11.08248 -11.00864 -10.98984 -10.68241 -10.45906 -10.29526 -10.16161 -9.58559 -9.13568 -8.81019 -8.73572 -8.71396 -7.86977 -6.63542 -6.55064 -4.31308 0.10288 0.72425 1.44916 1.47589 1.63495 1.79212 2.19359 2.35197 2.62091 2.73984 3.03409 3.08549 3.11888 3.15319 3.29790 3.45341 3.58949 3.82771 3.95286 4.31370 4.38116 4.40966 4.69102 4.74529 4.79432 4.99418 5.14889 5.19242 5.25799 5.36419 5.39743 5.81684 5.94498 6.03669 6.21819 6.38281 6.39315 6.41666 6.84347 7.01676 7.29790 7.42669 7.71813 8.00646 8.45529 8.84902 10.42039 Molecular weight = 377.03amu Principal moments of inertia in cm(-1) A = 0.012724 B = 0.002039 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.992941 B =13731.212142 C =15916.048390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.019 3.981 3 N -0.467 5.467 4 C 0.178 3.822 5 N -0.596 5.596 6 C 0.591 3.409 7 O -0.483 6.483 8 C -0.008 4.008 9 C -0.145 4.145 10 C 0.039 3.961 11 C 0.039 3.961 12 C -0.154 4.154 13 C -0.215 4.215 14 C -0.011 4.011 15 O -0.157 6.157 16 O 0.149 5.851 17 N -0.319 5.319 18 S 0.204 5.796 19 C -0.248 4.248 20 S 0.158 5.842 21 C -0.558 4.558 22 H 0.089 0.911 23 C 0.082 3.918 24 N -0.861 5.861 25 Si 0.925 3.075 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.264 1.264 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.420 0.580 33 H 0.192 0.808 34 H 0.161 0.839 35 H 0.158 0.842 36 H 0.214 0.786 37 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.609 21.418 -0.026 27.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.124 4.124 3 N -0.188 5.188 4 C -0.192 4.192 5 N -0.245 5.245 6 C 0.373 3.627 7 O -0.355 6.355 8 C -0.165 4.165 9 C -0.167 4.167 10 C -0.024 4.024 11 C -0.011 4.011 12 C -0.174 4.174 13 C -0.234 4.234 14 C -0.079 4.079 15 O -0.052 6.052 16 O 0.068 5.932 17 N -0.017 5.017 18 S 0.447 5.553 19 C -0.485 4.485 20 S 0.410 5.590 21 C -0.707 4.707 22 H 0.107 0.893 23 C -0.129 4.129 24 N -0.494 5.494 25 Si 0.750 3.250 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.188 1.188 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.259 0.741 33 H 0.209 0.791 34 H 0.179 0.821 35 H 0.176 0.824 36 H 0.230 0.770 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 15.125 20.039 -0.023 25.107 hybrid contribution 1.853 0.118 0.010 1.856 sum 16.978 20.157 -0.013 26.354 Atomic orbital electron populations 1.20127 0.87871 1.02211 1.01894 1.19047 0.96771 0.84440 1.12112 1.65777 1.02696 1.32515 1.17796 1.23596 0.89840 0.92461 1.13299 1.42007 1.03755 1.08872 1.69855 1.16712 0.80641 0.86936 0.78387 1.90832 1.76929 1.19974 1.47755 1.22907 0.94513 0.91251 1.07860 1.22745 0.92514 0.97833 1.03648 1.20426 0.86416 0.89168 1.06437 1.17993 0.82830 0.88600 1.11718 1.22023 0.95887 0.95917 1.03568 1.21845 0.95004 0.98036 1.08534 1.24405 0.90550 0.89422 1.03561 1.84080 1.13245 1.36801 1.71099 1.84929 1.09123 1.33044 1.66074 1.74222 1.07086 1.04503 1.15900 1.85785 1.01945 0.95106 1.72425 1.28814 1.01076 1.06874 1.11699 1.83086 1.10957 0.84209 1.80793 1.23288 0.93610 0.94075 1.59688 0.89268 1.25042 0.98354 0.96676 0.92839 1.70005 1.24424 1.10405 1.44558 0.86017 0.81182 0.78757 0.79059 1.19578 1.20246 1.18840 0.91779 0.91832 0.90971 0.74132 0.79069 0.82102 0.82414 0.76955 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.08 10.02 36.00 0.36 -0.72 16 2 C 0.02 0.41 6.73 -83.97 -0.57 -0.16 16 3 N -0.47 -9.55 10.55 -9.81 -0.10 -9.66 16 4 C 0.18 3.53 8.39 -87.30 -0.73 2.79 16 5 N -0.60 -9.61 5.39 -12.53 -0.07 -9.68 16 6 C 0.59 9.29 7.81 -12.13 -0.09 9.20 16 7 O -0.48 -8.96 14.46 5.35 0.08 -8.89 16 8 C -0.01 -0.10 7.17 -82.67 -0.59 -0.69 16 9 C -0.15 -1.55 10.96 -38.64 -0.42 -1.98 16 10 C 0.04 0.36 7.30 -36.42 -0.27 0.10 16 11 C 0.04 0.32 7.17 -36.71 -0.26 0.06 16 12 C -0.15 -0.97 10.86 -39.34 -0.43 -1.40 16 13 C -0.22 -1.03 10.88 -39.84 -0.43 -1.47 16 14 C -0.01 -0.05 12.08 29.54 0.36 0.31 16 15 O -0.16 -1.22 10.67 4.58 0.05 -1.17 16 16 O 0.15 1.45 11.21 15.72 0.18 1.63 16 17 N -0.32 -3.67 11.81 33.35 0.39 -3.28 16 18 S 0.20 4.50 18.34 -107.50 -1.97 2.53 16 19 C -0.25 -5.70 6.67 29.48 0.20 -5.50 16 20 S 0.16 3.95 20.74 -107.50 -2.23 1.72 16 21 C -0.56 -15.06 9.26 30.81 0.29 -14.78 16 22 H 0.09 2.39 5.97 -52.48 -0.31 2.08 16 23 C 0.08 2.18 5.49 -17.49 -0.10 2.08 16 24 N -0.86 -23.51 13.22 55.47 0.73 -22.77 16 25 Si 0.93 20.52 29.55 -169.99 -5.02 15.50 16 26 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 27 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 28 H -0.26 -5.84 7.11 56.52 0.40 -5.44 16 29 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 1.25 7.38 -51.93 -0.38 0.87 16 32 H 0.42 5.73 8.57 -40.82 -0.35 5.38 16 33 H 0.19 1.82 8.06 -52.48 -0.42 1.40 16 34 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.16 0.38 8.06 -52.49 -0.42 -0.05 16 36 H 0.21 0.17 8.06 -52.49 -0.42 -0.26 16 37 H 0.28 7.03 8.32 -40.82 -0.34 6.69 16 LS Contribution 366.82 15.07 5.53 5.53 Total: -1.00 -31.72 366.82 -7.85 -39.57 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -2.72 Total: 1.13 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -2.69 Total: -12.15 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: 0.96 Total: -45.38 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.30 Total: -8.43 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 8.44 SS G_CDS: -4.20 Total: 4.24 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.72 -7.85 -39.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065625240.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.745 kcal (2) G-P(sol) polarization free energy of solvation -31.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds