Wall clock time and date at job start Fri Apr 10 2020 14:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31554 * 122.23060 * 2 1 4 4 C 1.29989 * 117.13647 * 180.02562 * 3 2 1 5 5 N 1.38747 * 125.36186 * 180.02562 * 4 3 2 6 6 C 1.34781 * 119.99635 * 179.97438 * 5 4 3 7 7 O 1.21513 * 120.00064 * 0.02562 * 6 5 4 8 8 C 1.48269 * 120.00038 * 179.97438 * 6 5 4 9 9 C 1.41740 * 126.81710 * 179.71216 * 8 6 5 10 10 C 1.37144 * 103.79746 * 179.97438 * 9 8 6 11 11 C 1.47013 * 126.85584 * 180.13263 * 10 9 8 12 12 C 1.36339 * 125.96429 * 180.28354 * 11 10 9 13 13 C 1.40701 * 106.72194 * 179.97438 * 12 11 10 14 14 C 1.34891 * 107.07854 * 359.97438 * 13 12 11 15 15 O 1.34224 * 108.73176 * 359.75565 * 14 13 12 16 16 O 1.34584 * 106.28752 * 0.34536 * 10 9 8 17 17 N 1.20871 * 111.70374 * 359.76562 * 16 10 9 18 18 S 1.76143 * 109.26862 * 0.02562 * 4 3 2 19 19 C 1.34695 * 122.22619 * 180.02562 * 2 1 3 20 20 S 1.76196 * 125.93090 * 359.71492 * 19 2 1 21 21 C 1.76207 * 100.00074 * 180.02562 * 20 19 2 22 22 H 1.08007 * 119.99400 * 359.97438 * 21 20 19 23 23 C 1.38438 * 120.00164 * 179.97438 * 21 20 19 24 24 N 1.31803 * 119.99971 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99836 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47078 * 89.99999 * 25 23 21 27 27 H 1.48496 * 109.47249 * 209.99877 * 25 23 21 28 28 H 1.48500 * 109.47280 * 330.00398 * 25 23 21 29 29 H 1.09008 * 109.47075 * 269.97592 * 1 2 3 30 30 H 1.08998 * 109.47117 * 29.96894 * 1 2 3 31 31 H 1.08998 * 109.47675 * 149.97639 * 1 2 3 32 32 H 0.96998 * 120.00147 * 0.02562 * 5 4 3 33 33 H 1.08005 * 128.10389 * 0.03514 * 9 8 6 34 34 H 1.07999 * 126.63923 * 359.93624 * 12 11 10 35 35 H 1.07989 * 126.46523 * 179.97438 * 13 12 11 36 36 H 1.07996 * 125.63493 * 180.02562 * 14 13 12 37 37 H 0.96995 * 119.99931 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2086 1.1128 0.0000 4 6 3.5033 0.9974 -0.0005 5 7 4.4036 2.0531 -0.0001 6 6 5.7290 1.8085 -0.0002 7 8 6.1354 0.6633 -0.0011 8 6 6.6911 2.9366 -0.0003 9 6 8.1057 2.8465 0.0053 10 6 8.5167 4.1549 0.0019 11 6 9.9033 4.6436 0.0025 12 6 10.2916 5.9505 0.0045 13 6 11.6986 5.9547 0.0049 14 6 12.0986 4.6665 0.0037 15 8 11.0125 3.8779 0.0080 16 8 7.3974 4.9022 0.0027 17 7 6.4021 4.2164 0.0015 18 16 3.9346 -0.7104 -0.0018 19 6 2.2252 -1.1394 -0.0005 20 16 1.5697 -2.7749 0.0059 21 6 3.0665 -3.7046 0.0024 22 1 4.0187 -3.1948 -0.0029 23 6 3.0220 -5.0882 0.0064 24 7 1.8600 -5.7102 0.0133 25 14 4.6089 -6.0737 0.0020 26 1 5.0357 -6.3310 1.4009 27 1 4.3867 -7.3668 -0.6935 28 1 5.6660 -5.3067 -0.7048 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5133 31 1 -0.3634 -0.8897 -0.5142 32 1 4.0791 2.9672 0.0010 33 1 8.7168 1.9560 0.0100 34 1 9.6445 6.8152 0.0050 35 1 12.3378 6.8251 0.0060 36 1 13.1235 4.3259 0.0041 37 1 1.8289 -6.6797 0.0157 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065625240.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:54:27 Heat of formation + Delta-G solvation = 74.627425 kcal Electronic energy + Delta-G solvation = -26966.366063 eV Core-core repulsion = 22738.708924 eV Total energy + Delta-G solvation = -4227.657139 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 377.034 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -46.43987 -43.56374 -41.61839 -40.23787 -36.45925 -35.49672 -34.83512 -34.51641 -33.74506 -32.10233 -29.88245 -28.86036 -27.75944 -27.26959 -24.68684 -24.61121 -23.19551 -22.45892 -22.28408 -21.07708 -20.16644 -19.45116 -19.26955 -19.24341 -18.20064 -17.70315 -17.44754 -17.11378 -17.08782 -16.94099 -16.58176 -15.93107 -15.61516 -15.60234 -15.13828 -14.98003 -14.44680 -13.89547 -13.74505 -13.64541 -13.52173 -13.45046 -13.31756 -13.09176 -13.07568 -12.91841 -12.62403 -12.26562 -12.05735 -11.94702 -11.77622 -11.75116 -11.39955 -10.91550 -10.89701 -10.58107 -10.55649 -9.61395 -9.27245 -8.59273 -8.42276 -6.32095 -0.68895 -0.43006 0.03071 0.09022 0.70748 0.84365 1.09148 1.15451 1.25188 1.33734 1.40735 1.45277 1.55162 1.72661 1.97241 2.12831 2.36788 2.55398 2.80366 3.03256 3.06566 3.50464 3.57687 3.75299 3.88139 3.98867 4.19622 4.37894 4.51685 4.56893 4.74856 4.83613 4.90053 4.93499 4.94587 5.00263 5.28159 5.39180 5.46610 5.59862 5.95097 6.00307 6.34068 6.58612 6.75069 6.85375 8.48208 Molecular weight = 377.03amu Principal moments of inertia in cm(-1) A = 0.012724 B = 0.002039 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.992941 B =13731.212142 C =15916.048390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.035 3.965 3 N -0.475 5.475 4 C 0.213 3.787 5 N -0.591 5.591 6 C 0.598 3.402 7 O -0.509 6.509 8 C -0.023 4.023 9 C -0.160 4.160 10 C 0.062 3.938 11 C -0.001 4.001 12 C -0.141 4.141 13 C -0.225 4.225 14 C 0.001 3.999 15 O -0.176 6.176 16 O 0.165 5.835 17 N -0.323 5.323 18 S 0.172 5.828 19 C -0.274 4.274 20 S 0.114 5.886 21 C -0.579 4.579 22 H 0.082 0.918 23 C 0.036 3.964 24 N -0.893 5.893 25 Si 0.986 3.014 26 H -0.263 1.263 27 H -0.264 1.264 28 H -0.266 1.266 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.435 0.565 33 H 0.197 0.803 34 H 0.177 0.823 35 H 0.184 0.816 36 H 0.250 0.750 37 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.112 24.329 0.009 30.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.107 4.107 3 N -0.196 5.196 4 C -0.159 4.159 5 N -0.242 5.242 6 C 0.382 3.618 7 O -0.382 6.382 8 C -0.178 4.178 9 C -0.182 4.182 10 C -0.002 4.002 11 C -0.051 4.051 12 C -0.161 4.161 13 C -0.243 4.243 14 C -0.067 4.067 15 O -0.072 6.072 16 O 0.082 5.918 17 N -0.018 5.018 18 S 0.416 5.584 19 C -0.510 4.510 20 S 0.362 5.638 21 C -0.727 4.727 22 H 0.100 0.900 23 C -0.172 4.172 24 N -0.527 5.527 25 Si 0.807 3.193 26 H -0.188 1.188 27 H -0.188 1.188 28 H -0.191 1.191 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.276 0.724 33 H 0.215 0.785 34 H 0.195 0.805 35 H 0.202 0.798 36 H 0.266 0.734 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 17.613 23.000 0.013 28.969 hybrid contribution 1.341 -0.306 0.001 1.376 sum 18.954 22.694 0.013 29.569 Atomic orbital electron populations 1.20263 0.85367 1.03286 1.03250 1.19717 0.98519 0.83920 1.08515 1.65979 1.02541 1.31781 1.19324 1.23879 0.90150 0.92553 1.09319 1.42105 1.03561 1.08665 1.69825 1.17120 0.80555 0.87421 0.76680 1.90824 1.77300 1.21565 1.48527 1.22459 0.94426 0.90787 1.10174 1.22808 0.91650 0.98814 1.04959 1.20558 0.86923 0.88435 1.04249 1.17987 0.82372 0.89380 1.15383 1.22419 0.97113 0.95597 1.00961 1.22231 0.94543 0.99084 1.08465 1.25304 0.91180 0.89456 1.00801 1.84079 1.13812 1.37783 1.71574 1.84904 1.09110 1.32556 1.65243 1.74209 1.07794 1.03908 1.15938 1.85930 1.02411 0.97096 1.72952 1.28673 1.01374 1.06321 1.14630 1.82908 1.11045 0.85705 1.84111 1.23474 0.93916 0.94871 1.60441 0.90025 1.25897 1.01464 0.97434 0.92396 1.70079 1.26117 1.10826 1.45712 0.85122 0.77212 0.77605 0.79367 1.18798 1.18844 1.19068 0.90165 0.89508 0.91075 0.72372 0.78542 0.80545 0.79840 0.73368 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.11 10.02 71.23 0.71 -1.40 16 2 C 0.04 1.48 6.73 41.79 0.28 1.76 16 3 N -0.47 -18.89 10.55 -184.95 -1.95 -20.84 16 4 C 0.21 8.30 8.39 179.19 1.50 9.80 16 5 N -0.59 -18.48 5.39 -311.86 -1.68 -20.16 16 6 C 0.60 18.57 7.81 86.91 0.68 19.25 16 7 O -0.51 -19.05 14.46 -3.76 -0.05 -19.10 16 8 C -0.02 -0.55 7.17 42.77 0.31 -0.24 16 9 C -0.16 -3.31 10.96 22.88 0.25 -3.06 16 10 C 0.06 1.07 7.30 24.31 0.18 1.25 16 11 C 0.00 -0.02 7.17 24.13 0.17 0.15 16 12 C -0.14 -1.39 10.86 22.43 0.24 -1.14 16 13 C -0.22 -1.37 10.88 22.10 0.24 -1.13 16 14 C 0.00 0.00 12.08 67.05 0.81 0.81 16 15 O -0.18 -2.40 10.67 -6.54 -0.07 -2.47 16 16 O 0.17 2.94 11.21 66.42 0.74 3.68 16 17 N -0.32 -6.98 11.81 -48.88 -0.58 -7.55 16 18 S 0.17 7.74 18.34 -56.49 -1.04 6.70 16 19 C -0.27 -12.90 6.67 67.01 0.45 -12.45 16 20 S 0.11 5.90 20.74 -56.49 -1.17 4.73 16 21 C -0.58 -32.45 9.26 67.87 0.63 -31.82 16 22 H 0.08 4.56 5.97 -2.91 -0.02 4.54 16 23 C 0.04 1.94 5.49 84.74 0.47 2.41 16 24 N -0.89 -50.13 13.22 21.59 0.29 -49.84 16 25 Si 0.99 42.81 29.55 68.60 2.03 44.84 16 26 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 27 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 28 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 29 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 30 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.07 2.45 7.38 -2.39 -0.02 2.43 16 32 H 0.44 11.19 8.57 -92.71 -0.79 10.39 16 33 H 0.20 3.73 8.06 -2.91 -0.02 3.70 16 34 H 0.18 1.05 8.06 -2.91 -0.02 1.03 16 35 H 0.18 0.10 8.06 -2.92 -0.02 0.08 16 36 H 0.25 -0.64 8.06 -2.91 -0.02 -0.67 16 37 H 0.28 14.61 8.32 -92.71 -0.77 13.83 16 Total: -1.00 -70.51 366.82 3.82 -66.69 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 0.39 Total: 9.15 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: 6.92 Total: -15.82 kcal Atomic # 7 Polarization: -94.48 SS G_CDS: -3.92 Total: -98.40 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: 0.62 Total: -17.89 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 16 Polarization: 13.64 SS G_CDS: -2.21 Total: 11.43 kcal Total: -70.51 3.82 -66.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065625240.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.318 kcal (2) G-P(sol) polarization free energy of solvation -70.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds