Wall clock time and date at job start Fri Apr 10 2020 14:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99763 * 2 1 4 4 H 1.48497 * 109.47061 * 240.00070 * 3 2 1 5 5 H 1.48501 * 109.47155 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47157 * 120.00057 * 3 2 1 7 7 C 1.38810 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00016 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00115 * 0.02562 * 7 2 1 10 10 C 1.47427 * 125.64499 * 359.95484 * 9 7 2 11 11 C 1.54915 * 104.82947 * 204.16624 * 10 9 7 12 12 C 1.55163 * 101.58035 * 322.99134 * 11 10 9 13 13 C 1.47016 * 125.65039 * 180.02562 * 9 7 2 14 14 H 1.09004 * 109.87774 * 298.47615 * 13 9 7 15 15 C 1.50706 * 109.88253 * 59.48111 * 13 9 7 16 16 N 1.31127 * 126.55139 * 223.54816 * 15 13 9 17 17 C 1.34494 * 105.61203 * 179.97438 * 16 15 13 18 18 C 1.50701 * 126.28851 * 179.97438 * 17 16 15 19 19 C 1.50696 * 109.46836 * 90.00117 * 18 17 16 20 20 C 1.38246 * 119.99153 * 90.00514 * 19 18 17 21 21 C 1.38220 * 120.00976 * 180.25733 * 20 19 18 22 22 C 1.38318 * 119.99127 * 359.50747 * 21 20 19 23 23 Br 1.89101 * 120.01169 * 180.23698 * 22 21 20 24 24 C 1.38328 * 119.98189 * 0.46810 * 22 21 20 25 25 C 1.38219 * 119.98632 * 359.76635 * 24 22 21 26 26 N 1.29944 * 107.42581 * 0.24523 * 17 16 15 27 27 O 1.21303 * 110.25321 * 359.57314 * 26 17 16 28 28 H 0.97001 * 120.00357 * 359.97438 * 1 2 3 29 29 H 1.08997 * 110.37196 * 323.00423 * 10 9 7 30 30 H 1.08998 * 110.36622 * 85.32845 * 10 9 7 31 31 H 1.09004 * 111.00257 * 81.06604 * 11 10 9 32 32 H 1.08999 * 111.00328 * 204.88355 * 11 10 9 33 33 H 1.09001 * 110.71997 * 277.13845 * 12 11 10 34 34 H 1.09002 * 110.71744 * 153.86538 * 12 11 10 35 35 H 1.09001 * 109.47168 * 330.00555 * 18 17 16 36 36 H 1.08996 * 109.47496 * 210.00484 * 18 17 16 37 37 H 1.08002 * 119.98964 * 359.97130 * 20 19 18 38 38 H 1.08004 * 120.00109 * 179.74659 * 21 20 19 39 39 H 1.08001 * 120.00615 * 179.79385 * 24 22 21 40 40 H 1.08005 * 119.99430 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5331 0.0009 11 6 -0.4015 -3.9319 0.6139 12 6 0.7785 -4.7524 0.0290 13 6 1.9318 -3.7274 0.0016 14 1 2.5306 -3.8640 -0.8989 15 6 2.7978 -3.8971 1.2232 16 7 3.9926 -4.4359 1.2648 17 6 4.3743 -4.3710 2.5528 18 6 5.6800 -4.8632 3.1220 19 6 6.6985 -3.7535 3.0747 20 6 6.8255 -2.8860 4.1435 21 6 7.7559 -1.8649 4.0983 22 6 8.5670 -1.7172 2.9877 23 35 9.8448 -0.3244 2.9280 24 6 8.4401 -2.5858 1.9186 25 6 7.5060 -3.6037 1.9626 26 7 3.4080 -3.8113 3.2173 27 8 2.4951 -3.5265 2.4711 28 1 -0.4851 0.8400 0.0004 29 1 -0.5992 -1.7585 0.6161 30 1 -0.5275 -2.4875 -1.0174 31 1 -0.3516 -3.8970 1.7022 32 1 -1.3592 -4.3323 0.2813 33 1 0.5457 -5.0987 -0.9780 34 1 1.0242 -5.5919 0.6795 35 1 6.0367 -5.7091 2.5343 36 1 5.5311 -5.1759 4.1555 37 1 6.1944 -3.0034 5.0120 38 1 7.8522 -1.1847 4.9317 39 1 9.0709 -2.4688 1.0498 40 1 7.4071 -4.2821 1.1281 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069661866.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:56:44 Heat of formation + Delta-G solvation = 119.741044 kcal Electronic energy + Delta-G solvation = -25788.129779 eV Core-core repulsion = 22039.037744 eV Total energy + Delta-G solvation = -3749.092034 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 377.048 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -44.90501 -39.55327 -37.73913 -35.67539 -33.64487 -32.79011 -31.83409 -31.22385 -30.36391 -29.57142 -27.92736 -27.05799 -24.75879 -23.34713 -22.93180 -22.44187 -21.24544 -20.33553 -19.62718 -17.51618 -17.32953 -16.70543 -16.44415 -15.76730 -15.36087 -15.28987 -14.75233 -14.39358 -13.94818 -13.70105 -13.56313 -13.46418 -13.09901 -12.56265 -12.26735 -12.20959 -11.91294 -11.81093 -11.66176 -11.33614 -11.25997 -11.02243 -10.91657 -10.89338 -10.63252 -10.53034 -10.45097 -10.23674 -10.12571 -10.03872 -9.69206 -9.31416 -9.17410 -8.80887 -8.75651 -7.16748 -5.83121 -3.28993 0.85829 1.16258 1.45721 1.81131 2.72859 3.33264 3.38443 3.38879 3.40381 3.59314 4.09923 4.34118 4.43399 4.62015 4.64746 4.74520 5.05579 5.16631 5.26901 5.28436 5.32170 5.41758 5.45129 5.50981 5.56121 5.68964 5.79586 5.84665 6.02074 6.03410 6.13123 6.24280 6.32043 6.36574 6.44004 6.53397 6.58551 6.63691 6.66038 7.38796 7.46356 7.70494 8.17400 8.78415 9.01849 9.60409 10.19139 11.19051 Molecular weight = 377.05amu Principal moments of inertia in cm(-1) A = 0.010022 B = 0.002983 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.174407 B = 9383.316481 C =11524.620154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.007 3.993 3 Si 0.914 3.086 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.283 1.283 7 C -0.240 4.240 8 H 0.075 0.925 9 N -0.577 5.577 10 C 0.147 3.853 11 C -0.149 4.149 12 C -0.119 4.119 13 C 0.237 3.763 14 H 0.086 0.914 15 C 0.209 3.791 16 N -0.507 5.507 17 C 0.157 3.843 18 C 0.016 3.984 19 C -0.067 4.067 20 C -0.100 4.100 21 C -0.091 4.091 22 C -0.089 4.089 23 Br -0.056 7.056 24 C -0.091 4.091 25 C -0.095 4.095 26 N -0.398 5.398 27 O 0.092 5.908 28 H 0.257 0.743 29 H 0.111 0.889 30 H 0.024 0.976 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.524 -8.511 5.907 17.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.191 4.191 3 Si 0.743 3.257 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.209 1.209 7 C -0.368 4.368 8 H 0.093 0.907 9 N -0.299 5.299 10 C 0.023 3.977 11 C -0.188 4.188 12 C -0.158 4.158 13 C 0.123 3.877 14 H 0.104 0.896 15 C -0.014 4.014 16 N -0.241 5.241 17 C -0.117 4.117 18 C -0.022 4.022 19 C -0.068 4.068 20 C -0.119 4.119 21 C -0.111 4.111 22 C -0.168 4.168 23 Br 0.029 6.971 24 C -0.111 4.111 25 C -0.114 4.114 26 N -0.107 5.107 27 O 0.035 5.965 28 H 0.068 0.932 29 H 0.129 0.871 30 H 0.042 0.958 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.122 0.878 36 H 0.117 0.883 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 15.297 -7.741 6.563 18.357 hybrid contribution 0.220 0.736 -0.090 0.773 sum 15.518 -7.005 6.473 18.215 Atomic orbital electron populations 1.69787 1.04904 1.25472 1.55552 1.24780 0.95699 0.97828 1.00760 0.86177 0.78640 0.82657 0.78239 1.20798 1.21171 1.20913 1.18950 0.90422 0.82050 1.45366 0.90672 1.44728 1.02349 0.98523 1.84324 1.22090 0.83341 0.93295 0.98957 1.23068 0.96561 0.98683 1.00468 1.22571 0.95013 0.96479 1.01705 1.19931 0.91462 0.89013 0.87270 0.89640 1.31180 0.91974 0.88660 0.89567 1.71831 1.10743 1.23473 1.18092 1.25326 0.98073 1.00775 0.87478 1.18766 0.85489 0.95915 1.02065 1.19769 0.95874 0.96734 0.94432 1.21107 0.97638 0.94207 0.98930 1.21078 0.94815 0.98105 0.97100 1.21800 0.99310 0.97231 0.98506 1.96702 1.54474 1.46948 1.98969 1.21104 0.98635 0.94079 0.97251 1.21121 0.94606 0.97990 0.97644 1.74537 0.99085 1.18131 1.18953 1.85329 1.35256 1.58789 1.17122 0.93250 0.87143 0.95765 0.91836 0.91558 0.90121 0.91810 0.87806 0.88345 0.84913 0.84924 0.84850 0.84598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 53. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.28 10.09 55.49 0.56 -24.72 16 2 C 0.01 0.18 5.49 -17.43 -0.10 0.08 16 3 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.24 -6.47 9.90 -15.06 -0.15 -6.61 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.58 -13.83 3.13 -163.88 -0.51 -14.35 16 10 C 0.15 3.30 5.89 -2.52 -0.01 3.28 16 11 C -0.15 -2.60 7.09 -24.58 -0.17 -2.77 16 12 C -0.12 -1.91 6.48 -24.90 -0.16 -2.07 16 13 C 0.24 4.68 3.68 -68.11 -0.25 4.43 16 14 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 15 C 0.21 4.23 6.86 -13.06 -0.09 4.14 16 16 N -0.51 -9.59 11.55 -9.87 -0.11 -9.71 16 17 C 0.16 2.72 7.45 -156.37 -1.17 1.56 16 18 C 0.02 0.20 5.97 -29.04 -0.17 0.03 16 19 C -0.07 -0.85 5.12 -104.62 -0.54 -1.39 16 20 C -0.10 -1.25 9.70 -39.59 -0.38 -1.63 16 21 C -0.09 -1.11 9.79 -39.56 -0.39 -1.50 16 22 C -0.09 -1.11 6.22 -39.52 -0.25 -1.36 16 23 Br -0.06 -0.64 33.70 -68.01 -2.29 -2.93 16 24 C -0.09 -1.10 9.79 -39.56 -0.39 -1.49 16 25 C -0.09 -1.17 9.70 -39.59 -0.38 -1.55 16 26 N -0.40 -7.83 12.16 30.90 0.38 -7.45 16 27 O 0.09 1.97 11.31 18.10 0.20 2.18 16 28 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.11 2.83 5.87 -51.93 -0.30 2.52 16 30 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 0.93 7.82 -51.93 -0.41 0.53 16 35 H 0.10 1.08 8.09 -51.93 -0.42 0.66 16 36 H 0.10 1.03 8.08 -51.93 -0.42 0.61 16 37 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 39 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 40 H 0.14 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 360.89 15.07 5.44 5.44 Total: -1.00 -29.82 360.89 -10.86 -40.68 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -4.90 Total: 0.79 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -4.60 Total: -6.86 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.31 Total: -56.23 kcal Atomic # 8 Polarization: 1.97 SS G_CDS: 0.20 Total: 2.18 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 35 Polarization: -0.64 SS G_CDS: -2.29 Total: -2.93 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.82 -10.86 -40.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069661866.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.421 kcal (2) G-P(sol) polarization free energy of solvation -29.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds