Wall clock time and date at job start Fri Apr 10 2020 14:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99763 * 2 1 4 4 H 1.48497 * 109.47061 * 240.00070 * 3 2 1 5 5 H 1.48501 * 109.47155 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47157 * 120.00057 * 3 2 1 7 7 C 1.38810 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00016 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00115 * 0.02562 * 7 2 1 10 10 C 1.47427 * 125.64499 * 359.95484 * 9 7 2 11 11 C 1.54915 * 104.82947 * 204.16624 * 10 9 7 12 12 C 1.55163 * 101.58035 * 322.99134 * 11 10 9 13 13 C 1.47016 * 125.65039 * 180.02562 * 9 7 2 14 14 H 1.09004 * 109.87774 * 298.47615 * 13 9 7 15 15 C 1.50706 * 109.88253 * 59.48111 * 13 9 7 16 16 N 1.31127 * 126.55139 * 223.54816 * 15 13 9 17 17 C 1.34494 * 105.61203 * 179.97438 * 16 15 13 18 18 C 1.50701 * 126.28851 * 179.97438 * 17 16 15 19 19 C 1.50696 * 109.46836 * 90.00117 * 18 17 16 20 20 C 1.38246 * 119.99153 * 90.00514 * 19 18 17 21 21 C 1.38220 * 120.00976 * 180.25733 * 20 19 18 22 22 C 1.38318 * 119.99127 * 359.50747 * 21 20 19 23 23 Br 1.89101 * 120.01169 * 180.23698 * 22 21 20 24 24 C 1.38328 * 119.98189 * 0.46810 * 22 21 20 25 25 C 1.38219 * 119.98632 * 359.76635 * 24 22 21 26 26 N 1.29944 * 107.42581 * 0.24523 * 17 16 15 27 27 O 1.21303 * 110.25321 * 359.57314 * 26 17 16 28 28 H 0.97001 * 120.00357 * 359.97438 * 1 2 3 29 29 H 1.08997 * 110.37196 * 323.00423 * 10 9 7 30 30 H 1.08998 * 110.36622 * 85.32845 * 10 9 7 31 31 H 1.09004 * 111.00257 * 81.06604 * 11 10 9 32 32 H 1.08999 * 111.00328 * 204.88355 * 11 10 9 33 33 H 1.09001 * 110.71997 * 277.13845 * 12 11 10 34 34 H 1.09002 * 110.71744 * 153.86538 * 12 11 10 35 35 H 1.09001 * 109.47168 * 330.00555 * 18 17 16 36 36 H 1.08996 * 109.47496 * 210.00484 * 18 17 16 37 37 H 1.08002 * 119.98964 * 359.97130 * 20 19 18 38 38 H 1.08004 * 120.00109 * 179.74659 * 21 20 19 39 39 H 1.08001 * 120.00615 * 179.79385 * 24 22 21 40 40 H 1.08005 * 119.99430 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5331 0.0009 11 6 -0.4015 -3.9319 0.6139 12 6 0.7785 -4.7524 0.0290 13 6 1.9318 -3.7274 0.0016 14 1 2.5306 -3.8640 -0.8989 15 6 2.7978 -3.8971 1.2232 16 7 3.9926 -4.4359 1.2648 17 6 4.3743 -4.3710 2.5528 18 6 5.6800 -4.8632 3.1220 19 6 6.6985 -3.7535 3.0747 20 6 6.8255 -2.8860 4.1435 21 6 7.7559 -1.8649 4.0983 22 6 8.5670 -1.7172 2.9877 23 35 9.8448 -0.3244 2.9280 24 6 8.4401 -2.5858 1.9186 25 6 7.5060 -3.6037 1.9626 26 7 3.4080 -3.8113 3.2173 27 8 2.4951 -3.5265 2.4711 28 1 -0.4851 0.8400 0.0004 29 1 -0.5992 -1.7585 0.6161 30 1 -0.5275 -2.4875 -1.0174 31 1 -0.3516 -3.8970 1.7022 32 1 -1.3592 -4.3323 0.2813 33 1 0.5457 -5.0987 -0.9780 34 1 1.0242 -5.5919 0.6795 35 1 6.0367 -5.7091 2.5343 36 1 5.5311 -5.1759 4.1555 37 1 6.1944 -3.0034 5.0120 38 1 7.8522 -1.1847 4.9317 39 1 9.0709 -2.4688 1.0498 40 1 7.4071 -4.2821 1.1281 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069661866.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:56:44 Heat of formation + Delta-G solvation = 103.696026 kcal Electronic energy + Delta-G solvation = -25788.825543 eV Core-core repulsion = 22039.037744 eV Total energy + Delta-G solvation = -3749.787799 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 377.048 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -46.39118 -40.48921 -39.36259 -37.03793 -34.99032 -34.49772 -33.15478 -32.14513 -31.49022 -31.29136 -29.50735 -28.11360 -26.64669 -24.77568 -23.94296 -23.77434 -22.39064 -21.95779 -21.10588 -19.12734 -18.94389 -18.10452 -17.66038 -17.12995 -16.62381 -16.47150 -16.24540 -15.84963 -15.50176 -15.05981 -14.58299 -14.52276 -14.12042 -13.97654 -13.86054 -13.64965 -13.51925 -13.17524 -13.09508 -12.81129 -12.78083 -12.43198 -12.25713 -12.11377 -12.02610 -11.99277 -11.90853 -11.83771 -11.55918 -11.43733 -11.35889 -10.86700 -10.73475 -10.10413 -9.71630 -9.09644 -7.86616 -5.33662 -0.11536 0.23128 0.29259 0.52935 1.30877 1.40534 1.41555 1.48091 2.04117 2.38227 2.41139 2.81523 3.17103 3.30049 3.60716 3.64872 3.69858 3.86082 3.87585 4.02546 4.08993 4.24262 4.25976 4.34526 4.50771 4.55597 4.63540 4.69039 4.86301 4.90585 4.92825 4.99059 5.07872 5.09159 5.10815 5.17943 5.24554 5.39448 5.41836 5.69886 5.71629 5.78175 6.26214 7.01537 7.26981 7.64191 8.23852 9.12777 Molecular weight = 377.05amu Principal moments of inertia in cm(-1) A = 0.010022 B = 0.002983 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.174407 B = 9383.316481 C =11524.620154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.041 4.041 3 Si 0.964 3.036 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.289 1.289 7 C -0.245 4.245 8 H 0.064 0.936 9 N -0.598 5.598 10 C 0.148 3.852 11 C -0.135 4.135 12 C -0.105 4.105 13 C 0.231 3.769 14 H 0.090 0.910 15 C 0.202 3.798 16 N -0.509 5.509 17 C 0.170 3.830 18 C 0.018 3.982 19 C -0.079 4.079 20 C -0.109 4.109 21 C -0.100 4.100 22 C -0.101 4.101 23 Br -0.049 7.049 24 C -0.098 4.098 25 C -0.101 4.101 26 N -0.415 5.415 27 O 0.060 5.940 28 H 0.252 0.748 29 H 0.074 0.926 30 H 0.011 0.989 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.129 0.871 36 H 0.120 0.880 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.561 -10.137 5.917 19.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.236 4.236 3 Si 0.792 3.208 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.215 1.215 7 C -0.374 4.374 8 H 0.082 0.918 9 N -0.320 5.320 10 C 0.024 3.976 11 C -0.173 4.173 12 C -0.143 4.143 13 C 0.119 3.881 14 H 0.107 0.893 15 C -0.020 4.020 16 N -0.244 5.244 17 C -0.103 4.103 18 C -0.020 4.020 19 C -0.080 4.080 20 C -0.127 4.127 21 C -0.120 4.120 22 C -0.180 4.180 23 Br 0.036 6.964 24 C -0.118 4.118 25 C -0.120 4.120 26 N -0.129 5.129 27 O 0.009 5.991 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.029 0.971 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.127 0.873 34 H 0.103 0.897 35 H 0.147 0.853 36 H 0.139 0.861 37 H 0.160 0.840 38 H 0.163 0.837 39 H 0.166 0.834 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 16.319 -9.389 6.559 19.937 hybrid contribution 0.019 1.202 -0.071 1.204 sum 16.337 -8.187 6.488 19.392 Atomic orbital electron populations 1.69998 1.05665 1.25465 1.56682 1.25412 0.96486 1.00234 1.01481 0.85397 0.77599 0.79903 0.77916 1.20162 1.20900 1.21545 1.19043 0.90148 0.83662 1.44534 0.91839 1.44854 1.03140 0.99313 1.84730 1.21889 0.82537 0.95376 0.97783 1.22927 0.98864 0.95760 0.99747 1.22602 0.92367 0.95618 1.03746 1.20174 0.92777 0.88147 0.86986 0.89265 1.31013 0.92484 0.89022 0.89523 1.71861 1.10052 1.23555 1.18909 1.26157 0.98831 0.98565 0.86752 1.19051 0.82980 0.96397 1.03606 1.19869 0.96253 0.97092 0.94810 1.21317 0.97823 0.94225 0.99370 1.21300 0.94739 0.98358 0.97565 1.22007 0.99623 0.97614 0.98790 1.96701 1.54111 1.46595 1.98966 1.21344 0.98818 0.93924 0.97693 1.21346 0.94493 0.98244 0.97896 1.74544 0.99620 1.19611 1.19159 1.85302 1.36368 1.59862 1.17607 0.93807 0.90790 0.97128 0.92613 0.88272 0.87340 0.89701 0.85323 0.86140 0.83997 0.83698 0.83432 0.83368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.04 10.09 21.65 0.22 -52.82 16 2 C -0.04 -2.29 5.49 84.86 0.47 -1.83 16 3 Si 0.96 45.76 29.55 68.60 2.03 47.79 16 4 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 5 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 6 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 7 C -0.25 -13.43 9.90 84.03 0.83 -12.60 16 8 H 0.06 3.53 7.83 -2.91 -0.02 3.51 16 9 N -0.60 -28.87 3.13 -672.38 -2.11 -30.97 16 10 C 0.15 6.70 5.89 86.86 0.51 7.21 16 11 C -0.13 -4.47 7.09 31.99 0.23 -4.24 16 12 C -0.10 -3.08 6.48 31.78 0.21 -2.88 16 13 C 0.23 8.90 3.68 44.60 0.16 9.07 16 14 H 0.09 3.36 8.14 -2.38 -0.02 3.34 16 15 C 0.20 8.00 6.86 88.38 0.61 8.61 16 16 N -0.51 -18.45 11.55 -303.19 -3.50 -21.95 16 17 C 0.17 5.64 7.45 138.46 1.03 6.67 16 18 C 0.02 0.40 5.97 29.10 0.17 0.58 16 19 C -0.08 -1.87 5.12 -19.86 -0.10 -1.97 16 20 C -0.11 -2.56 9.70 22.27 0.22 -2.34 16 21 C -0.10 -2.32 9.79 22.28 0.22 -2.10 16 22 C -0.10 -2.39 6.22 22.31 0.14 -2.25 16 23 Br -0.05 -1.06 33.70 -20.37 -0.69 -1.74 16 24 C -0.10 -2.22 9.79 22.29 0.22 -2.01 16 25 C -0.10 -2.31 9.70 22.27 0.22 -2.09 16 26 N -0.42 -16.01 12.16 -60.32 -0.73 -16.74 16 27 O 0.06 2.55 11.31 74.82 0.85 3.40 16 28 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 29 H 0.07 3.91 5.87 -2.39 -0.01 3.90 16 30 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.08 2.19 7.82 -2.39 -0.02 2.17 16 35 H 0.13 2.24 8.09 -2.39 -0.02 2.22 16 36 H 0.12 2.18 8.08 -2.39 -0.02 2.16 16 37 H 0.14 2.98 8.06 -2.91 -0.02 2.95 16 38 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 39 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 40 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -65.46 360.89 2.25 -63.21 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 1.07 Total: 12.01 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 5.12 Total: -2.18 kcal Atomic # 7 Polarization: -116.37 SS G_CDS: -6.12 Total: -122.49 kcal Atomic # 8 Polarization: 2.55 SS G_CDS: 0.85 Total: 3.40 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Atomic # 35 Polarization: -1.06 SS G_CDS: -0.69 Total: -1.74 kcal Total: -65.46 2.25 -63.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069661866.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.907 kcal (2) G-P(sol) polarization free energy of solvation -65.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds