Wall clock time and date at job start Fri Apr 10 2020 14:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38410 * 119.84332 * 2 1 4 4 C 1.37909 * 120.17539 * 179.69908 * 3 2 1 5 5 C 1.39625 * 119.86030 * 0.61932 * 4 3 2 6 6 C 1.47756 * 120.15469 * 179.67987 * 5 4 3 7 7 O 1.21583 * 119.99988 * 179.72529 * 6 5 4 8 8 N 1.34777 * 120.00007 * 359.45012 * 6 5 4 9 9 C 1.40088 * 119.99758 * 180.27955 * 8 6 5 10 10 C 1.40426 * 125.97917 * 359.70886 * 9 8 6 11 11 C 1.35230 * 107.86830 * 179.82755 * 10 9 8 12 12 N 1.34977 * 107.86202 * 0.43450 * 11 10 9 13 13 C 1.46506 * 125.96937 * 179.72124 * 12 11 10 14 14 C 1.53001 * 109.46561 * 124.97946 * 13 12 11 15 15 C 1.50698 * 109.47212 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99503 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00666 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00436 * 179.97438 * 17 15 14 19 19 Si 1.86807 * 119.99795 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46996 * 89.99540 * 19 17 15 21 21 H 1.48489 * 109.47318 * 210.00160 * 19 17 15 22 22 H 1.48502 * 109.46677 * 330.00054 * 19 17 15 23 23 N 1.31232 * 125.97015 * 180.02562 * 9 8 6 24 24 C 1.39680 * 119.68855 * 359.40093 * 5 4 3 25 25 Br 1.89101 * 120.08533 * 180.29732 * 24 5 4 26 26 C 1.38107 * 119.82741 * 0.28208 * 24 5 4 27 27 H 1.09002 * 109.47117 * 269.98132 * 1 2 3 28 28 H 1.08998 * 109.47259 * 29.97992 * 1 2 3 29 29 H 1.09000 * 109.47065 * 149.97675 * 1 2 3 30 30 H 1.08007 * 119.91322 * 359.97438 * 3 2 1 31 31 H 1.08004 * 120.07375 * 180.31965 * 4 3 2 32 32 H 0.97000 * 119.99736 * 0.27205 * 8 6 5 33 33 H 1.08000 * 126.06470 * 0.02562 * 10 9 8 34 34 H 1.07996 * 126.06913 * 180.15173 * 11 10 9 35 35 H 1.08999 * 109.46794 * 244.97290 * 13 12 11 36 36 H 1.08992 * 109.47359 * 4.98051 * 13 12 11 37 37 H 1.09002 * 109.46833 * 299.99689 * 14 13 12 38 38 H 1.08991 * 109.47646 * 59.99718 * 14 13 12 39 39 H 0.97004 * 119.99897 * 179.97438 * 18 17 15 40 40 H 1.07994 * 119.93844 * 180.02562 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2006 0.0000 4 6 3.5748 1.2086 0.0063 5 6 4.2771 0.0018 -0.0005 6 6 5.7546 0.0028 -0.0010 7 8 6.3633 -1.0497 -0.0018 8 7 6.4277 1.1704 -0.0061 9 6 7.8286 1.1713 -0.0125 10 6 8.6543 0.0355 -0.0085 11 6 9.9393 0.4567 -0.0211 12 7 9.9326 1.8064 -0.0229 13 6 11.1140 2.6728 -0.0294 14 6 11.0308 3.6396 -1.2124 15 6 12.2463 4.5304 -1.2196 16 1 13.0023 4.4185 -0.4564 17 6 12.3933 5.4882 -2.2003 18 7 13.4538 6.2660 -2.2062 19 14 11.0861 5.6814 -3.5207 20 1 10.0646 6.6590 -3.0667 21 1 11.7162 6.1695 -4.7735 22 1 10.4381 4.3689 -3.7713 23 7 8.5987 2.2339 -0.0174 24 6 3.5762 -1.2065 -0.0008 25 35 4.5159 -2.8475 -0.0014 26 6 2.1952 -1.1995 -0.0004 27 1 -0.3633 -0.0003 1.0277 28 1 -0.3634 0.8901 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6518 2.1336 -0.0004 31 1 4.1106 2.1463 0.0115 32 1 5.9421 2.0101 -0.0055 33 1 8.3220 -0.9921 -0.0003 34 1 10.8154 -0.1748 -0.0241 35 1 11.1540 3.2395 0.9008 36 1 12.0120 2.0620 -0.1218 37 1 10.9907 3.0728 -2.1426 38 1 10.1328 4.2503 -1.1201 39 1 13.5574 6.9396 -2.8965 40 1 1.6515 -2.1326 -0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096484404.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:56:52 Heat of formation + Delta-G solvation = 87.630825 kcal Electronic energy + Delta-G solvation = -24431.665956 eV Core-core repulsion = 20681.181518 eV Total energy + Delta-G solvation = -3750.484438 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 377.048 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.19447 -40.31983 -38.80886 -35.27136 -34.02951 -33.56453 -32.51350 -31.89894 -29.86806 -29.69269 -29.07053 -27.94108 -24.98189 -23.36368 -23.08282 -21.51450 -21.39620 -20.27633 -19.77978 -18.13582 -17.31216 -16.70688 -16.06245 -15.65528 -15.56790 -15.40173 -15.13061 -14.69867 -14.30314 -14.17633 -14.06450 -13.94147 -13.41916 -12.94702 -12.85163 -12.77902 -12.70676 -12.63688 -12.16691 -11.78189 -11.64102 -11.25936 -11.09539 -11.04252 -10.82909 -10.45208 -10.12800 -10.06940 -9.91005 -9.39614 -9.38077 -9.12123 -9.09996 -8.63517 -8.53002 -7.86385 -6.14881 -4.15540 0.21413 0.65303 1.34998 2.12126 2.37271 2.54417 3.10082 3.27553 3.34532 3.36278 3.40887 3.52533 4.11851 4.15498 4.33964 4.38243 4.62452 4.66092 4.81574 5.01128 5.06306 5.11656 5.19707 5.26242 5.30795 5.45940 5.52882 5.60762 5.85620 5.88667 5.93066 6.00724 6.11522 6.18328 6.30203 6.34244 7.00286 7.07980 7.13784 7.28009 7.47173 7.68666 7.95795 8.16527 8.36491 8.85941 9.46339 10.97572 Molecular weight = 377.05amu Principal moments of inertia in cm(-1) A = 0.014954 B = 0.002142 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.937292 B =13069.585333 C =14389.998771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.055 4.055 3 C -0.114 4.114 4 C -0.074 4.074 5 C -0.114 4.114 6 C 0.555 3.445 7 O -0.482 6.482 8 N -0.627 5.627 9 C 0.276 3.724 10 C -0.276 4.276 11 C 0.058 3.942 12 N -0.345 5.345 13 C 0.142 3.858 14 C -0.020 4.020 15 C -0.527 4.527 16 H 0.076 0.924 17 C 0.073 3.927 18 N -0.898 5.898 19 Si 0.880 3.120 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.266 1.266 23 N -0.312 5.312 24 C -0.036 4.036 25 Br -0.007 7.007 26 C -0.102 4.102 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.410 0.590 33 H 0.167 0.833 34 H 0.174 0.826 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.021 0.979 38 H 0.028 0.972 39 H 0.265 0.735 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.295 -17.699 6.027 33.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.056 4.056 3 C -0.133 4.133 4 C -0.094 4.094 5 C -0.119 4.119 6 C 0.341 3.659 7 O -0.355 6.355 8 N -0.276 5.276 9 C 0.022 3.978 10 C -0.307 4.307 11 C -0.090 4.090 12 N -0.127 5.127 13 C 0.023 3.977 14 C -0.058 4.058 15 C -0.566 4.566 16 H 0.094 0.906 17 C -0.130 4.130 18 N -0.536 5.536 19 Si 0.707 3.293 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.191 1.191 23 N -0.142 5.142 24 C -0.117 4.117 25 Br 0.080 6.920 26 C -0.122 4.122 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.246 0.754 33 H 0.184 0.816 34 H 0.191 0.809 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.039 0.961 38 H 0.046 0.954 39 H 0.075 0.925 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -27.253 -17.626 5.931 32.993 hybrid contribution -0.956 0.365 -0.775 1.284 sum -28.209 -17.261 5.156 33.471 Atomic orbital electron populations 1.20890 0.90050 1.03575 1.03065 1.20168 0.96774 0.92512 0.96149 1.21138 0.93738 0.98263 1.00128 1.21373 0.94692 0.96763 0.96552 1.19542 0.92830 0.93287 1.06276 1.18061 0.86982 0.83386 0.77463 1.90907 1.68620 1.29713 1.46240 1.42387 1.02888 1.09642 1.72690 1.19022 0.83658 0.93153 1.01956 1.21668 0.90335 1.00172 1.18540 1.22641 0.99424 0.85231 1.01672 1.48810 1.04483 1.04837 1.54604 1.22079 0.80926 0.92361 1.02315 1.19827 0.98703 0.94552 0.92702 1.20895 1.05172 1.16751 1.13745 0.90621 1.24939 0.95408 0.95098 0.97506 1.69896 1.27893 1.21115 1.34655 0.86764 0.82060 0.79042 0.81396 1.20087 1.21252 1.19058 1.77324 0.87803 1.20098 1.28995 1.21984 0.94632 0.92550 1.02542 1.96825 1.76732 1.21658 1.96758 1.21010 0.91529 0.98954 1.00748 0.90341 0.90800 0.90910 0.84517 0.84529 0.75371 0.81551 0.80893 0.90121 0.88831 0.96102 0.95364 0.92495 0.84267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.41 10.00 36.01 0.36 -0.05 16 2 C -0.05 -0.34 5.89 -104.54 -0.62 -0.95 16 3 C -0.11 -0.71 9.68 -39.64 -0.38 -1.09 16 4 C -0.07 -0.58 9.54 -39.18 -0.37 -0.95 16 5 C -0.11 -1.20 5.88 -104.95 -0.62 -1.82 16 6 C 0.56 7.38 7.73 -12.37 -0.10 7.29 16 7 O -0.48 -7.41 10.60 5.29 0.06 -7.35 16 8 N -0.63 -8.54 5.40 -12.01 -0.06 -8.60 16 9 C 0.28 4.76 8.11 -154.44 -1.25 3.51 16 10 C -0.28 -4.63 9.60 -39.83 -0.38 -5.01 16 11 C 0.06 0.94 11.44 -17.24 -0.20 0.75 16 12 N -0.34 -6.47 3.68 -61.38 -0.23 -6.70 16 13 C 0.14 2.77 6.45 -4.04 -0.03 2.74 16 14 C -0.02 -0.47 4.23 -27.88 -0.12 -0.59 16 15 C -0.53 -14.59 9.66 -34.44 -0.33 -14.92 16 16 H 0.08 2.19 7.99 -52.48 -0.42 1.77 16 17 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 18 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 19 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.27 -6.55 6.54 56.52 0.37 -6.18 16 23 N -0.31 -6.06 12.43 31.43 0.39 -5.67 16 24 C -0.04 -0.36 6.26 -39.09 -0.24 -0.61 16 25 Br -0.01 -0.08 30.40 -68.01 -2.07 -2.14 16 26 C -0.10 -0.77 9.42 -39.61 -0.37 -1.15 16 27 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 28 H 0.07 0.19 8.08 -51.93 -0.42 -0.23 16 29 H 0.07 0.20 8.08 -51.93 -0.42 -0.22 16 30 H 0.14 0.51 8.06 -52.48 -0.42 0.09 16 31 H 0.14 0.80 6.41 -52.48 -0.34 0.46 16 32 H 0.41 4.43 6.86 -40.82 -0.28 4.15 16 33 H 0.17 2.73 5.91 -52.49 -0.31 2.42 16 34 H 0.17 2.12 8.06 -52.49 -0.42 1.70 16 35 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 36 H 0.09 1.61 8.07 -51.93 -0.42 1.20 16 37 H 0.02 0.51 7.20 -51.93 -0.37 0.14 16 38 H 0.03 0.70 7.57 -51.93 -0.39 0.31 16 39 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 358.95 15.07 5.41 5.41 Total: -1.00 -34.15 358.95 -9.80 -43.94 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -4.65 Total: 1.11 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -4.75 Total: -10.86 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: 0.87 Total: -47.36 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: 0.06 Total: -7.35 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Atomic # 35 Polarization: -0.08 SS G_CDS: -2.07 Total: -2.14 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.15 -9.80 -43.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096484404.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.576 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds