Wall clock time and date at job start Fri Apr 10 2020 14:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99399 * 2 1 4 4 H 1.48499 * 109.47244 * 269.72297 * 3 2 1 5 5 H 1.48497 * 109.47129 * 29.72575 * 3 2 1 6 6 H 1.48505 * 109.46806 * 149.72428 * 3 2 1 7 7 C 1.38806 * 120.00510 * 179.72319 * 2 1 3 8 8 H 1.07998 * 120.00135 * 155.26438 * 7 2 1 9 9 N 1.36935 * 119.99901 * 335.27507 * 7 2 1 10 10 C 1.46923 * 120.62889 * 332.09815 * 9 7 2 11 11 C 1.52759 * 109.01237 * 233.58434 * 10 9 7 12 12 C 1.53040 * 109.38545 * 305.59084 * 11 10 9 13 13 C 1.50698 * 109.45133 * 181.24563 * 12 11 10 14 14 N 1.30980 * 126.43230 * 119.65286 * 13 12 11 15 15 C 1.35225 * 105.57528 * 179.86571 * 14 13 12 16 16 C 1.48399 * 126.41499 * 180.14580 * 15 14 13 17 17 C 1.39351 * 120.12602 * 0.02562 * 16 15 14 18 18 C 1.37990 * 119.88825 * 179.72044 * 17 16 15 19 19 C 1.38359 * 120.14408 * 0.54784 * 18 17 16 20 20 C 1.38264 * 120.25251 * 359.72848 * 19 18 17 21 21 C 1.38147 * 120.11139 * 359.97438 * 20 19 18 22 22 Br 1.89098 * 120.07497 * 179.97438 * 21 20 19 23 23 N 1.30773 * 107.17244 * 0.40407 * 15 14 13 24 24 O 1.21289 * 110.09318 * 359.74582 * 23 15 14 25 25 C 1.53051 * 109.53536 * 61.23641 * 12 11 10 26 26 C 1.46923 * 120.63374 * 152.38349 * 9 7 2 27 27 H 0.97000 * 119.99468 * 174.24935 * 1 2 3 28 28 H 1.09000 * 109.59189 * 353.42211 * 10 9 7 29 29 H 1.09006 * 109.58862 * 113.85065 * 10 9 7 30 30 H 1.08998 * 109.57125 * 185.55519 * 11 10 9 31 31 H 1.09008 * 109.38350 * 65.51618 * 11 10 9 32 32 H 1.08990 * 109.45979 * 301.21912 * 12 11 10 33 33 H 1.08001 * 120.05033 * 359.97210 * 17 16 15 34 34 H 1.08000 * 119.92578 * 180.24991 * 18 17 16 35 35 H 1.07999 * 119.87405 * 179.74047 * 19 18 17 36 36 H 1.08001 * 119.94841 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.49549 * 178.68448 * 25 12 11 38 38 H 1.09002 * 109.52407 * 58.60242 * 25 12 11 39 39 H 1.09006 * 109.58528 * 246.15354 * 26 9 7 40 40 H 1.09002 * 109.58420 * 6.43424 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.5034 2.0432 -1.4000 5 1 1.4445 2.6544 0.6942 6 1 3.5447 1.4420 0.7059 7 6 2.0104 -1.2020 0.0058 8 1 3.0160 -1.2468 -0.3853 9 7 1.4199 -2.3312 0.5073 10 6 0.3882 -2.2368 1.5490 11 6 0.7870 -3.1246 2.7264 12 6 1.0461 -4.5471 2.2250 13 6 1.4100 -5.4313 3.3898 14 7 0.7625 -6.4976 3.7891 15 6 1.4509 -6.9621 4.8562 16 6 1.1188 -8.1613 5.6648 17 6 0.0010 -8.9307 5.3481 18 6 -0.3000 -10.0481 6.0997 19 6 0.4989 -10.3992 7.1734 20 6 1.6061 -9.6367 7.4964 21 6 1.9207 -8.5194 6.7473 22 35 3.4349 -7.4769 7.1905 23 7 2.4611 -6.1535 5.0457 24 8 2.4508 -5.2715 4.2132 25 6 2.1976 -4.5326 1.2168 26 6 1.8105 -3.6605 0.0183 27 1 -0.4849 -0.8359 -0.0842 28 1 0.3017 -1.2035 1.8852 29 1 -0.5678 -2.5740 1.1482 30 1 -0.0174 -3.1390 3.4618 31 1 1.6933 -2.7302 3.1862 32 1 0.1471 -4.9320 1.7439 33 1 -0.6263 -8.6552 4.5132 34 1 -1.1639 -10.6472 5.8522 35 1 0.2569 -11.2722 7.7612 36 1 2.2266 -9.9154 8.3353 37 1 2.3970 -5.5492 0.8777 38 1 3.0910 -4.1251 1.6899 39 1 0.9729 -4.1161 -0.5099 40 1 2.6607 -3.5660 -0.6572 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276834754.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:56:36 Heat of formation + Delta-G solvation = 118.226785 kcal Electronic energy + Delta-G solvation = -25350.984496 eV Core-core repulsion = 21601.826799 eV Total energy + Delta-G solvation = -3749.157698 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 377.048 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -45.44203 -39.66673 -38.08319 -35.82609 -34.34071 -32.96392 -32.17214 -31.13927 -30.44731 -29.71230 -29.47878 -25.75739 -24.92161 -23.66117 -22.56714 -22.52220 -22.41385 -20.87458 -19.28879 -17.95745 -17.92719 -17.32890 -16.81045 -15.94139 -15.62471 -14.90571 -14.49419 -14.26801 -14.13593 -13.92453 -13.92093 -13.55206 -13.50180 -13.23857 -12.80820 -12.37274 -11.96840 -11.88879 -11.78907 -11.68598 -11.32121 -11.20303 -11.16776 -10.82147 -10.73301 -10.51894 -10.44680 -10.20886 -10.01993 -9.96901 -9.78897 -9.34972 -9.21445 -8.97763 -8.41174 -6.95813 -6.10602 -3.27480 0.29601 0.72583 1.30366 1.36136 2.32652 2.93683 3.27778 3.32056 3.49444 3.53963 3.68948 3.86025 4.37485 4.47406 4.56671 4.75407 4.82289 4.96844 5.04507 5.11721 5.16478 5.21232 5.33492 5.45054 5.49888 5.65789 5.77841 5.79852 5.82262 5.89817 6.00297 6.02737 6.17736 6.26778 6.29008 6.31829 6.36354 6.58820 6.70919 6.96158 7.09146 7.97302 8.18311 8.53835 9.06226 9.79914 10.22701 11.18455 Molecular weight = 377.05amu Principal moments of inertia in cm(-1) A = 0.019698 B = 0.002243 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.111205 B =12481.086235 C =13366.244964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.023 4.023 3 Si 1.064 2.936 4 H -0.294 1.294 5 H -0.286 1.286 6 H -0.292 1.292 7 C -0.350 4.350 8 H 0.057 0.943 9 N -0.599 5.599 10 C 0.152 3.848 11 C -0.132 4.132 12 C 0.010 3.990 13 C 0.210 3.790 14 N -0.483 5.483 15 C 0.186 3.814 16 C 0.014 3.986 17 C -0.073 4.073 18 C -0.108 4.108 19 C -0.101 4.101 20 C -0.095 4.095 21 C -0.071 4.071 22 Br -0.015 7.015 23 N -0.352 5.352 24 O 0.085 5.915 25 C -0.129 4.129 26 C 0.150 3.850 27 H 0.269 0.731 28 H 0.087 0.913 29 H 0.022 0.978 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.110 0.890 33 H 0.145 0.855 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.021 0.979 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.827 -21.995 15.574 27.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.225 4.225 3 Si 0.894 3.106 4 H -0.221 1.221 5 H -0.212 1.212 6 H -0.218 1.218 7 C -0.479 4.479 8 H 0.075 0.925 9 N -0.323 5.323 10 C 0.026 3.974 11 C -0.172 4.172 12 C -0.010 4.010 13 C -0.010 4.010 14 N -0.215 5.215 15 C -0.084 4.084 16 C 0.011 3.989 17 C -0.094 4.094 18 C -0.126 4.126 19 C -0.121 4.121 20 C -0.115 4.115 21 C -0.153 4.153 22 Br 0.071 6.929 23 N -0.058 5.058 24 O 0.024 5.976 25 C -0.169 4.169 26 C 0.024 3.976 27 H 0.080 0.920 28 H 0.105 0.895 29 H 0.040 0.960 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.128 0.872 33 H 0.163 0.837 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.157 0.843 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.039 0.961 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.524 -20.302 16.428 26.237 hybrid contribution -0.144 -1.939 -0.227 1.958 sum 2.380 -22.241 16.200 27.618 Atomic orbital electron populations 1.70769 1.06623 1.30382 1.47817 1.25842 0.96504 1.01490 0.98649 0.83557 0.74764 0.75884 0.76428 1.22144 1.21159 1.21823 1.19972 0.97438 0.88455 1.42031 0.92471 1.44142 1.45884 1.01328 1.40929 1.20873 0.90632 0.99148 0.86739 1.22176 1.02052 0.92574 1.00390 1.20040 1.00887 0.92873 0.87227 1.29234 0.83681 0.93184 0.94901 1.71976 1.28038 1.10269 1.11222 1.23688 0.91322 0.98146 0.95224 1.17251 0.96293 0.91911 0.93486 1.21311 0.94909 0.93541 0.99617 1.21275 0.99899 0.96467 0.94971 1.21337 0.94135 0.99474 0.97109 1.21073 0.97913 0.93213 0.99308 1.21978 0.96402 0.98373 0.98539 1.96824 1.34908 1.68889 1.92245 1.75590 1.20229 1.00183 1.09829 1.85362 1.42182 1.39659 1.30436 1.22167 0.96906 1.00328 0.97545 1.20868 0.98106 0.86166 0.92495 0.91958 0.89491 0.96007 0.92265 0.91064 0.87208 0.83738 0.84495 0.84589 0.84349 0.92252 0.90980 0.96077 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.54 12.40 55.49 0.69 -25.85 16 2 C -0.02 -0.63 4.69 -17.43 -0.08 -0.71 16 3 Si 1.06 24.65 29.99 -169.99 -5.10 19.55 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.35 -9.36 9.49 -15.06 -0.14 -9.51 16 8 H 0.06 1.54 7.94 -52.49 -0.42 1.12 16 9 N -0.60 -14.10 2.86 -172.59 -0.49 -14.60 16 10 C 0.15 3.31 4.66 -3.93 -0.02 3.29 16 11 C -0.13 -2.32 5.33 -26.83 -0.14 -2.46 16 12 C 0.01 0.16 2.62 -91.73 -0.24 -0.08 16 13 C 0.21 3.32 7.00 -12.99 -0.09 3.23 16 14 N -0.48 -7.63 11.26 -9.88 -0.11 -7.74 16 15 C 0.19 2.86 7.72 -156.11 -1.21 1.65 16 16 C 0.01 0.18 5.88 -104.87 -0.62 -0.43 16 17 C -0.07 -0.76 9.70 -39.26 -0.38 -1.14 16 18 C -0.11 -0.80 10.03 -39.63 -0.40 -1.20 16 19 C -0.10 -0.69 10.04 -39.53 -0.40 -1.08 16 20 C -0.10 -0.81 9.78 -39.61 -0.39 -1.20 16 21 C -0.07 -0.82 6.25 -39.18 -0.24 -1.07 16 22 Br -0.02 -0.19 30.53 -68.01 -2.08 -2.26 16 23 N -0.35 -5.70 9.05 30.97 0.28 -5.42 16 24 O 0.08 1.39 11.29 18.04 0.20 1.60 16 25 C -0.13 -2.09 5.34 -26.61 -0.14 -2.23 16 26 C 0.15 2.91 6.52 -3.71 -0.02 2.88 16 27 H 0.27 7.80 6.71 -40.82 -0.27 7.53 16 28 H 0.09 2.15 6.30 -51.93 -0.33 1.83 16 29 H 0.02 0.48 7.87 -51.93 -0.41 0.07 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.31 8.14 -51.92 -0.42 0.88 16 32 H 0.11 1.68 8.14 -51.93 -0.42 1.25 16 33 H 0.14 1.45 7.88 -52.49 -0.41 1.04 16 34 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 35 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 36 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 LS Contribution 351.41 15.07 5.30 5.30 Total: -1.00 -30.39 351.41 -10.68 -41.07 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -4.85 Total: -1.60 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -4.51 Total: -10.04 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.36 Total: -53.60 kcal Atomic # 8 Polarization: 1.39 SS G_CDS: 0.20 Total: 1.60 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -5.10 Total: 19.55 kcal Atomic # 35 Polarization: -0.19 SS G_CDS: -2.08 Total: -2.26 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.39 -10.68 -41.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276834754.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.293 kcal (2) G-P(sol) polarization free energy of solvation -30.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds