Wall clock time and date at job start Fri Apr 10 2020 14:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38267 * 119.99533 * 2 1 4 4 C 1.38211 * 120.02245 * 180.02562 * 3 2 1 5 5 C 1.38239 * 120.01290 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00828 * 180.02562 * 5 4 3 7 7 N 1.46501 * 109.47100 * 270.28025 * 6 5 4 8 8 C 1.46509 * 119.99487 * 91.27907 * 7 6 5 9 9 C 1.50702 * 109.47169 * 7.65946 * 8 7 6 10 10 C 1.34514 * 125.78806 * 86.06546 * 9 8 7 11 11 C 1.41378 * 106.84068 * 179.97438 * 10 9 8 12 12 C 1.34521 * 106.83953 * 0.02562 * 11 10 9 13 13 O 1.34295 * 125.78794 * 265.75625 * 9 8 7 14 14 C 1.34769 * 120.00320 * 271.27915 * 7 6 5 15 15 O 1.21685 * 120.00244 * 358.99080 * 14 7 6 16 16 C 1.46379 * 119.99992 * 178.99433 * 14 7 6 17 17 H 1.07997 * 120.00229 * 234.52389 * 16 14 7 18 18 C 1.40049 * 120.00046 * 54.52543 * 16 14 7 19 19 N 1.30671 * 119.99825 * 5.79959 * 18 16 14 20 20 Si 1.86800 * 120.00061 * 185.80229 * 18 16 14 21 21 H 1.48502 * 109.46868 * 90.00158 * 20 18 16 22 22 H 1.48500 * 109.47208 * 209.99920 * 20 18 16 23 23 H 1.48496 * 109.47027 * 329.99938 * 20 18 16 24 24 C 1.38314 * 119.98640 * 0.02562 * 5 4 3 25 25 Br 1.89095 * 120.00755 * 179.97438 * 24 5 4 26 26 C 1.38195 * 119.99752 * 180.25540 * 2 1 3 27 27 H 1.09005 * 109.47119 * 90.00402 * 1 2 3 28 28 H 1.09006 * 109.46500 * 209.99966 * 1 2 3 29 29 H 1.08992 * 109.47250 * 329.99840 * 1 2 3 30 30 H 1.08000 * 119.98285 * 359.97438 * 3 2 1 31 31 H 1.07998 * 119.99568 * 179.97438 * 4 3 2 32 32 H 1.08993 * 109.47092 * 30.28219 * 6 5 4 33 33 H 1.09003 * 109.47258 * 150.28423 * 6 5 4 34 34 H 1.08993 * 109.46827 * 127.66550 * 8 7 6 35 35 H 1.09005 * 109.46689 * 247.66208 * 8 7 6 36 36 H 1.07997 * 126.58005 * 359.96787 * 10 9 8 37 37 H 1.07998 * 126.58450 * 179.97438 * 11 10 9 38 38 H 1.07999 * 125.78476 * 180.02562 * 12 11 10 39 39 H 0.97007 * 119.99913 * 180.97799 * 19 18 16 40 40 H 1.08006 * 120.00840 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5803 1.1981 -0.0005 5 6 4.2724 0.0014 -0.0005 6 6 5.7794 0.0023 -0.0005 7 7 6.2677 0.0093 -1.3817 8 6 6.5378 1.2813 -2.0566 9 6 6.4169 2.4109 -1.0665 10 6 7.3943 2.8543 -0.2556 11 6 6.8494 3.9185 0.4988 12 6 5.5713 4.0615 0.1043 13 8 5.3167 3.1495 -0.8482 14 6 6.4684 -1.1542 -2.0315 15 8 6.2616 -2.2111 -1.4649 16 6 6.9353 -1.1467 -3.4188 17 1 6.3791 -1.6755 -4.1786 18 6 8.1033 -0.4537 -3.7608 19 7 8.8373 0.0904 -2.8267 20 14 8.6117 -0.3072 -5.5523 21 1 8.0102 0.9172 -6.1390 22 1 10.0916 -0.2233 -5.6416 23 1 8.1375 -1.4991 -6.3005 24 6 3.5813 -1.1967 -0.0005 25 35 4.5274 -2.8340 -0.0013 26 6 2.1979 -1.1968 -0.0053 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3632 -0.8901 0.5139 29 1 -0.3633 0.8899 0.5138 30 1 1.6579 2.1326 -0.0004 31 1 4.1198 2.1337 -0.0010 32 1 6.1422 0.8899 0.5176 33 1 6.1432 -0.8901 0.5089 34 1 7.5464 1.2664 -2.4696 35 1 5.8175 1.4254 -2.8620 36 1 8.4019 2.4708 -0.1929 37 1 7.3607 4.5039 1.2487 38 1 4.8706 4.7898 0.4850 39 1 9.6387 0.5825 -3.0647 40 1 1.6580 -2.1322 -0.0091 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408515736.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:21 Heat of formation + Delta-G solvation = 28.097589 kcal Electronic energy + Delta-G solvation = -27109.667932 eV Core-core repulsion = 23324.309188 eV Total energy + Delta-G solvation = -3785.358744 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 377.041 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.57631 -40.66044 -39.45494 -36.22985 -35.27400 -34.07894 -33.70165 -32.79648 -31.10717 -30.05060 -29.76143 -28.06473 -26.54749 -25.09426 -23.53590 -22.56028 -21.90080 -21.49872 -20.91957 -18.97748 -18.19916 -17.61419 -17.27825 -16.95338 -16.75181 -16.32031 -15.91627 -15.63263 -15.40701 -14.87143 -14.68466 -14.37083 -14.21883 -13.91020 -13.78720 -13.63857 -13.44534 -13.32291 -13.20581 -13.03179 -12.80266 -12.75826 -12.46604 -12.31309 -12.17169 -12.09896 -11.81014 -11.35134 -10.94785 -10.71157 -10.65741 -9.78861 -9.50117 -9.30037 -9.07762 -8.80143 -8.32730 -6.63272 0.18584 0.33336 0.82143 0.99676 1.40667 1.44533 1.55097 1.76763 2.14350 2.29722 2.52665 2.58807 3.11145 3.28846 3.83265 3.86247 3.91767 4.05825 4.19647 4.23517 4.30733 4.35665 4.54788 4.55869 4.72032 4.81148 4.84970 4.90380 4.97973 5.01146 5.13711 5.20000 5.26339 5.29343 5.36239 5.49075 5.56357 5.60428 5.69841 5.78279 5.98588 6.28457 6.32027 6.42748 6.96875 7.34909 8.35537 8.58276 Molecular weight = 377.04amu Principal moments of inertia in cm(-1) A = 0.008456 B = 0.005606 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3310.524676 B = 4993.446697 C = 7018.558395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.084 4.084 3 C -0.112 4.112 4 C -0.118 4.118 5 C -0.097 4.097 6 C 0.151 3.849 7 N -0.591 5.591 8 C 0.177 3.823 9 C -0.025 4.025 10 C -0.204 4.204 11 C -0.217 4.217 12 C -0.044 4.044 13 O -0.183 6.183 14 C 0.581 3.419 15 O -0.599 6.599 16 C -0.570 4.570 17 H 0.073 0.927 18 C 0.047 3.953 19 N -0.857 5.857 20 Si 0.971 3.029 21 H -0.257 1.257 22 H -0.270 1.270 23 H -0.273 1.273 24 C -0.097 4.097 25 Br -0.024 7.024 26 C -0.116 4.116 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.157 0.843 31 H 0.151 0.849 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.143 0.857 35 H 0.035 0.965 36 H 0.137 0.863 37 H 0.172 0.828 38 H 0.245 0.755 39 H 0.285 0.715 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.478 9.427 7.315 16.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.086 4.086 3 C -0.130 4.130 4 C -0.136 4.136 5 C -0.100 4.100 6 C 0.027 3.973 7 N -0.324 5.324 8 C 0.055 3.945 9 C -0.075 4.075 10 C -0.225 4.225 11 C -0.236 4.236 12 C -0.110 4.110 13 O -0.080 6.080 14 C 0.380 3.620 15 O -0.484 6.484 16 C -0.608 4.608 17 H 0.091 0.909 18 C -0.159 4.159 19 N -0.493 5.493 20 Si 0.793 3.207 21 H -0.182 1.182 22 H -0.194 1.194 23 H -0.197 1.197 24 C -0.178 4.178 25 Br 0.064 6.936 26 C -0.136 4.136 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.175 0.825 31 H 0.167 0.833 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.159 0.841 35 H 0.053 0.947 36 H 0.155 0.845 37 H 0.190 0.810 38 H 0.261 0.739 39 H 0.096 0.904 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.303 8.263 7.483 15.875 hybrid contribution 0.711 0.078 -0.735 1.026 sum -10.591 8.341 6.749 15.076 Atomic orbital electron populations 1.20822 0.87912 1.04211 1.03299 1.20307 0.98067 0.91866 0.98321 1.21440 0.93347 0.98876 0.99381 1.21886 0.95472 0.97865 0.98411 1.20375 0.96767 0.92807 1.00068 1.20204 0.89101 1.02043 0.85937 1.47764 1.66773 1.05830 1.12036 1.20872 1.06081 0.77628 0.89907 1.22568 0.85455 0.97154 1.02301 1.21773 1.00645 1.00294 0.99751 1.22099 0.95806 1.01006 1.04688 1.24879 0.98875 0.95463 0.91797 1.84042 1.36593 1.38856 1.48488 1.18457 0.74181 0.82229 0.87178 1.90898 1.55879 1.32107 1.69508 1.21203 1.11238 1.34601 0.93758 0.90934 1.26138 0.94757 0.92200 1.02825 1.69432 1.13895 1.30931 1.35090 0.85362 0.77939 0.79415 0.77955 1.18169 1.19435 1.19744 1.22251 0.95635 0.92746 1.07123 1.96810 1.74443 1.25816 1.96515 1.21188 0.91183 0.99734 1.01488 0.90320 0.90651 0.89334 0.82527 0.83253 0.90307 0.91797 0.84086 0.94687 0.84465 0.81044 0.73888 0.90416 0.84625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.80 10.01 71.24 0.71 -1.09 16 2 C -0.08 -2.21 5.88 -19.87 -0.12 -2.33 16 3 C -0.11 -2.97 9.70 22.27 0.22 -2.75 16 4 C -0.12 -3.86 9.35 22.26 0.21 -3.66 16 5 C -0.10 -3.84 5.46 -19.85 -0.11 -3.95 16 6 C 0.15 6.64 4.90 85.63 0.42 7.06 16 7 N -0.59 -28.86 2.81 -835.59 -2.35 -31.20 16 8 C 0.18 7.94 5.52 85.63 0.47 8.41 16 9 C -0.03 -0.93 4.47 24.83 0.11 -0.81 16 10 C -0.20 -6.84 9.96 22.19 0.22 -6.61 16 11 C -0.22 -5.39 10.91 22.19 0.24 -5.15 16 12 C -0.04 -0.98 11.55 66.97 0.77 -0.20 16 13 O -0.18 -5.64 7.40 -2.43 -0.02 -5.66 16 14 C 0.58 32.76 6.97 86.36 0.60 33.36 16 15 O -0.60 -35.21 11.52 -4.30 -0.05 -35.26 16 16 C -0.57 -32.02 8.89 24.83 0.22 -31.80 16 17 H 0.07 4.15 7.85 -2.91 -0.02 4.12 16 18 C 0.05 2.36 4.38 85.30 0.37 2.74 16 19 N -0.86 -43.46 10.26 21.84 0.22 -43.24 16 20 Si 0.97 39.44 29.56 68.60 2.03 41.47 16 21 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 22 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 24 C -0.10 -3.83 6.22 22.31 0.14 -3.70 16 25 Br -0.02 -1.02 27.06 -20.37 -0.55 -1.57 16 26 C -0.12 -3.73 9.44 22.28 0.21 -3.52 16 27 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.07 1.15 8.09 -2.38 -0.02 1.13 16 29 H 0.09 1.13 8.08 -2.39 -0.02 1.11 16 30 H 0.16 2.93 8.06 -2.91 -0.02 2.90 16 31 H 0.15 4.61 3.57 -5.53 -0.02 4.59 16 32 H 0.08 3.23 5.55 -2.39 -0.01 3.22 16 33 H 0.06 3.09 6.11 -2.39 -0.01 3.08 16 34 H 0.14 6.80 3.86 -5.58 -0.02 6.78 16 35 H 0.03 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.14 4.84 8.06 -2.91 -0.02 4.82 16 37 H 0.17 3.17 8.06 -2.91 -0.02 3.15 16 38 H 0.25 2.81 8.06 -2.91 -0.02 2.79 16 39 H 0.29 13.18 8.29 -92.70 -0.77 12.41 16 40 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -67.24 341.53 5.05 -62.19 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: 1.07 Total: 27.29 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: 4.70 Total: -14.01 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: -2.13 Total: -74.45 kcal Atomic # 8 Polarization: -40.85 SS G_CDS: -0.07 Total: -40.92 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.47 kcal Atomic # 35 Polarization: -1.02 SS G_CDS: -0.55 Total: -1.57 kcal Total: -67.24 5.05 -62.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408515736.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.291 kcal (2) G-P(sol) polarization free energy of solvation -67.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds