Wall clock time and date at job start Fri Apr 10 2020 14:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40081 * 126.04196 * 2 1 4 4 C 1.30836 * 108.23219 * 179.76408 * 3 2 1 5 5 C 1.39858 * 108.21525 * 0.40137 * 4 3 2 6 6 S 1.76205 * 126.04525 * 179.85485 * 5 4 3 7 7 O 1.42104 * 106.40157 * 1.15055 * 6 5 4 8 8 O 1.42104 * 106.40250 * 228.23194 * 6 5 4 9 9 N 1.65600 * 107.21778 * 114.69373 * 6 5 4 10 10 C 1.36935 * 119.99981 * 269.99711 * 9 6 5 11 11 H 1.07995 * 120.00460 * 215.46949 * 10 9 6 12 12 C 1.38821 * 119.99650 * 35.46809 * 10 9 6 13 13 N 1.31620 * 119.99971 * 30.38573 * 12 10 9 14 14 Si 1.86797 * 119.99641 * 210.38148 * 12 10 9 15 15 H 1.48495 * 109.47329 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47093 * 120.00473 * 14 12 10 17 17 H 1.48505 * 109.47215 * 239.99894 * 14 12 10 18 18 C 1.46498 * 120.00182 * 89.99883 * 9 6 5 19 19 C 1.54960 * 110.92242 * 120.56228 * 18 9 6 20 20 C 1.54270 * 104.15931 * 156.30012 * 19 18 9 21 21 C 1.53873 * 106.63728 * 336.44365 * 20 19 18 22 22 C 1.54261 * 106.60141 * 359.97438 * 21 20 19 23 23 C 1.34984 * 126.03740 * 180.02562 * 2 1 3 24 24 Br 1.89105 * 126.13777 * 359.95223 * 23 2 1 25 25 H 1.09004 * 109.47074 * 269.97341 * 1 2 3 26 26 H 1.09003 * 109.46942 * 29.97336 * 1 2 3 27 27 H 1.09004 * 109.47078 * 149.97697 * 1 2 3 28 28 H 1.07997 * 125.88752 * 180.23815 * 4 3 2 29 29 H 0.97002 * 119.99591 * 179.97438 * 13 12 10 30 30 H 1.09009 * 110.67139 * 357.25949 * 18 9 6 31 31 H 1.08993 * 110.47959 * 37.64574 * 19 18 9 32 32 H 1.09006 * 110.53424 * 274.97393 * 19 18 9 33 33 H 1.09000 * 110.02794 * 217.13594 * 20 19 18 34 34 H 1.09004 * 110.03377 * 95.75557 * 20 19 18 35 35 H 1.09000 * 110.03005 * 119.26703 * 21 20 19 36 36 H 1.08999 * 110.03371 * 240.64367 * 21 20 19 37 37 H 1.09005 * 110.48740 * 142.28587 * 22 21 20 38 38 H 1.08995 * 110.48860 * 264.79918 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5348 0.7325 0.0051 5 6 3.5448 -0.6660 -0.0008 6 16 4.9768 -1.6927 -0.0009 7 8 6.0970 -0.8190 0.0335 8 8 4.7768 -2.6602 -1.0223 9 7 4.9859 -2.5214 1.4328 10 6 5.6161 -1.9906 2.5265 11 1 6.1279 -2.6387 3.2224 12 6 5.5970 -0.6191 2.7407 13 7 4.5723 0.0971 2.3292 14 14 7.0258 0.2097 3.6131 15 1 8.0450 -0.8089 3.9716 16 1 7.6342 1.2229 2.7139 17 1 6.5342 0.8745 4.8467 18 6 4.3199 -3.8226 1.5310 19 6 5.3244 -4.9289 1.9409 20 6 4.4425 -6.0214 2.5801 21 6 3.1581 -5.3246 3.0623 22 6 3.3038 -3.8322 2.7001 23 6 2.2591 -1.0915 -0.0005 24 35 1.6802 -2.8918 0.0000 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3633 0.8903 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 4.4052 1.3719 0.0101 29 1 4.5588 1.0553 2.4793 30 1 3.8296 -4.0759 0.5909 31 1 6.0407 -4.5438 2.6666 32 1 5.8410 -5.3202 1.0644 33 1 4.9619 -6.4734 3.4251 34 1 4.1985 -6.7843 1.8408 35 1 2.2908 -5.7488 2.5564 36 1 3.0537 -5.4392 4.1412 37 1 2.3466 -3.4229 2.3769 38 1 3.6911 -3.2696 3.5494 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585129835.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:53:06 Heat of formation + Delta-G solvation = 22.932171 kcal Electronic energy + Delta-G solvation = -26539.961512 eV Core-core repulsion = 22786.282387 eV Total energy + Delta-G solvation = -3753.679125 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 377.020 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.61220 -37.79603 -35.98215 -34.50715 -34.06715 -33.09816 -31.83309 -31.22230 -28.75319 -27.97453 -26.80686 -26.52393 -24.23556 -21.31296 -20.52305 -19.71210 -19.58775 -18.83239 -17.48347 -16.61678 -16.00144 -15.38906 -15.24676 -14.91629 -14.48218 -14.26757 -13.99765 -13.77128 -13.03105 -12.76809 -12.68118 -12.57205 -12.37172 -12.09988 -11.74084 -11.43047 -11.23506 -11.09415 -11.00718 -10.79137 -10.71158 -10.63801 -10.52827 -10.35826 -10.20356 -10.19322 -9.92115 -9.89369 -9.76515 -9.41697 -8.88717 -8.69856 -8.41578 -7.67292 -6.25860 -3.83053 1.27728 1.77218 2.00024 2.92800 3.16192 3.33811 3.46290 3.46924 4.24139 4.56581 4.77111 4.93281 5.12104 5.20550 5.28958 5.33504 5.41094 5.44240 5.46688 5.78181 5.94869 6.04845 6.12236 6.19833 6.25900 6.28231 6.42762 6.45968 6.50303 6.67092 6.90022 6.99037 6.99697 7.10295 7.12081 7.55850 7.68638 7.96843 8.46022 9.10964 9.51118 10.74248 Molecular weight = 377.02amu Principal moments of inertia in cm(-1) A = 0.009655 B = 0.008077 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.356570 B = 3465.593167 C = 5111.370067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.358 5.358 3 N -0.296 5.296 4 C 0.186 3.814 5 C -0.689 4.689 6 S 2.711 3.289 7 O -0.961 6.961 8 O -1.000 7.000 9 N -0.844 5.844 10 C -0.302 4.302 11 H 0.090 0.910 12 C 0.044 3.956 13 N -0.870 5.870 14 Si 0.917 3.083 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.291 1.291 18 C 0.143 3.857 19 C -0.131 4.131 20 C -0.120 4.120 21 C -0.123 4.123 22 C -0.128 4.128 23 C 0.161 3.839 24 Br 0.024 6.976 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.190 0.810 29 H 0.269 0.731 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.121 -5.466 -2.451 10.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.140 5.140 3 N -0.118 5.118 4 C -0.002 4.002 5 C -0.787 4.787 6 S 2.801 3.199 7 O -0.951 6.951 8 O -0.990 6.990 9 N -0.674 5.674 10 C -0.433 4.433 11 H 0.107 0.893 12 C -0.162 4.162 13 N -0.510 5.510 14 Si 0.744 3.256 15 H -0.195 1.195 16 H -0.202 1.202 17 H -0.218 1.218 18 C 0.034 3.966 19 C -0.171 4.171 20 C -0.158 4.158 21 C -0.161 4.161 22 C -0.168 4.168 23 C -0.049 4.049 24 Br 0.107 6.893 25 H 0.096 0.904 26 H 0.110 0.890 27 H 0.103 0.897 28 H 0.206 0.794 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.788 -4.919 -3.178 11.406 hybrid contribution 0.364 0.609 1.056 1.273 sum -9.423 -4.310 -2.121 10.577 Atomic orbital electron populations 1.21906 0.74777 1.04376 1.03673 1.48720 1.06286 1.02578 1.56429 1.77343 1.02001 1.05622 1.26828 1.22976 0.94570 0.92017 0.90665 1.31589 1.14212 1.09449 1.23458 1.01382 0.73167 0.72750 0.72647 1.93419 1.47946 1.67203 1.86524 1.93470 1.87391 1.60659 1.57435 1.52808 1.64136 1.26063 1.24394 1.18680 1.29140 0.90479 1.04978 0.89262 1.25256 0.96408 0.97455 0.97081 1.70220 1.25714 1.07977 1.47064 0.86051 0.82159 0.79593 0.77781 1.19531 1.20234 1.21780 1.21860 0.92091 0.84588 0.98014 1.22662 0.98586 0.95356 1.00503 1.22058 0.96395 0.97815 0.99576 1.22081 0.97051 0.96924 1.00032 1.22717 0.99249 0.94434 1.00355 1.22293 0.91843 0.87211 1.03581 1.96747 1.90042 1.05283 1.97220 0.90438 0.88969 0.89681 0.79353 0.92029 0.89775 0.90309 0.92383 0.92517 0.92693 0.93095 0.92583 0.92282 0.89616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.18 11.28 59.85 0.67 1.86 16 2 N -0.36 -6.54 4.01 -66.35 -0.27 -6.81 16 3 N -0.30 -6.00 12.57 30.62 0.39 -5.62 16 4 C 0.19 4.02 9.38 -17.37 -0.16 3.85 16 5 C -0.69 -15.43 4.61 -39.98 -0.18 -15.61 16 6 S 2.71 65.62 4.80 -107.50 -0.52 65.10 16 7 O -0.96 -25.58 15.74 -57.17 -0.90 -26.48 16 8 O -1.00 -24.15 16.15 -57.17 -0.92 -25.07 16 9 N -0.84 -19.64 2.88 -51.46 -0.15 -19.78 16 10 C -0.30 -7.43 7.50 -15.06 -0.11 -7.55 16 11 H 0.09 2.14 6.79 -52.49 -0.36 1.79 16 12 C 0.04 1.10 3.84 -17.43 -0.07 1.03 16 13 N -0.87 -21.94 8.77 55.49 0.49 -21.45 16 14 Si 0.92 21.03 29.65 -169.99 -5.04 15.99 16 15 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 18 C 0.14 2.85 2.42 -65.90 -0.16 2.69 16 19 C -0.13 -2.35 6.40 -25.03 -0.16 -2.51 16 20 C -0.12 -1.76 6.80 -25.61 -0.17 -1.94 16 21 C -0.12 -1.83 6.80 -25.62 -0.17 -2.00 16 22 C -0.13 -2.34 6.13 -25.07 -0.15 -2.50 16 23 C 0.16 3.20 7.34 -17.17 -0.13 3.08 16 24 Br 0.02 0.41 27.38 -68.01 -1.86 -1.46 16 25 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.08 0.89 7.66 -51.93 -0.40 0.49 16 28 H 0.19 3.91 8.06 -52.49 -0.42 3.49 16 29 H 0.27 6.65 8.18 -40.82 -0.33 6.32 16 30 H 0.08 1.67 5.06 -51.92 -0.26 1.41 16 31 H 0.08 1.47 6.59 -51.93 -0.34 1.13 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 1.06 5.92 -51.93 -0.31 0.75 16 38 H 0.09 1.76 7.11 -51.93 -0.37 1.39 16 LS Contribution 328.14 15.07 4.95 4.95 Total: -1.00 -29.45 328.14 -9.19 -38.64 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -4.55 Total: 1.59 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -0.80 Total: -19.59 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 0.46 Total: -53.66 kcal Atomic # 8 Polarization: -49.73 SS G_CDS: -1.82 Total: -51.55 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.04 Total: 15.99 kcal Atomic # 16 Polarization: 65.62 SS G_CDS: -0.52 Total: 65.10 kcal Atomic # 35 Polarization: 0.41 SS G_CDS: -1.86 Total: -1.46 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.45 -9.19 -38.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585129835.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.572 kcal (2) G-P(sol) polarization free energy of solvation -29.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds