Wall clock time and date at job start Fri Apr 10 2020 14:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40081 * 126.04196 * 2 1 4 4 C 1.30836 * 108.23219 * 179.76408 * 3 2 1 5 5 C 1.39858 * 108.21525 * 0.40137 * 4 3 2 6 6 S 1.76205 * 126.04525 * 179.85485 * 5 4 3 7 7 O 1.42104 * 106.40157 * 1.15055 * 6 5 4 8 8 O 1.42104 * 106.40250 * 228.23194 * 6 5 4 9 9 N 1.65600 * 107.21778 * 114.69373 * 6 5 4 10 10 C 1.36935 * 119.99981 * 269.99711 * 9 6 5 11 11 H 1.07995 * 120.00460 * 215.46949 * 10 9 6 12 12 C 1.38821 * 119.99650 * 35.46809 * 10 9 6 13 13 N 1.31620 * 119.99971 * 30.38573 * 12 10 9 14 14 Si 1.86797 * 119.99641 * 210.38148 * 12 10 9 15 15 H 1.48495 * 109.47329 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47093 * 120.00473 * 14 12 10 17 17 H 1.48505 * 109.47215 * 239.99894 * 14 12 10 18 18 C 1.46498 * 120.00182 * 89.99883 * 9 6 5 19 19 C 1.54960 * 110.92242 * 120.56228 * 18 9 6 20 20 C 1.54270 * 104.15931 * 156.30012 * 19 18 9 21 21 C 1.53873 * 106.63728 * 336.44365 * 20 19 18 22 22 C 1.54261 * 106.60141 * 359.97438 * 21 20 19 23 23 C 1.34984 * 126.03740 * 180.02562 * 2 1 3 24 24 Br 1.89105 * 126.13777 * 359.95223 * 23 2 1 25 25 H 1.09004 * 109.47074 * 269.97341 * 1 2 3 26 26 H 1.09003 * 109.46942 * 29.97336 * 1 2 3 27 27 H 1.09004 * 109.47078 * 149.97697 * 1 2 3 28 28 H 1.07997 * 125.88752 * 180.23815 * 4 3 2 29 29 H 0.97002 * 119.99591 * 179.97438 * 13 12 10 30 30 H 1.09009 * 110.67139 * 357.25949 * 18 9 6 31 31 H 1.08993 * 110.47959 * 37.64574 * 19 18 9 32 32 H 1.09006 * 110.53424 * 274.97393 * 19 18 9 33 33 H 1.09000 * 110.02794 * 217.13594 * 20 19 18 34 34 H 1.09004 * 110.03377 * 95.75557 * 20 19 18 35 35 H 1.09000 * 110.03005 * 119.26703 * 21 20 19 36 36 H 1.08999 * 110.03371 * 240.64367 * 21 20 19 37 37 H 1.09005 * 110.48740 * 142.28587 * 22 21 20 38 38 H 1.08995 * 110.48860 * 264.79918 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5348 0.7325 0.0051 5 6 3.5448 -0.6660 -0.0008 6 16 4.9768 -1.6927 -0.0009 7 8 6.0970 -0.8190 0.0335 8 8 4.7768 -2.6602 -1.0223 9 7 4.9859 -2.5214 1.4328 10 6 5.6161 -1.9906 2.5265 11 1 6.1279 -2.6387 3.2224 12 6 5.5970 -0.6191 2.7407 13 7 4.5723 0.0971 2.3292 14 14 7.0258 0.2097 3.6131 15 1 8.0450 -0.8089 3.9716 16 1 7.6342 1.2229 2.7139 17 1 6.5342 0.8745 4.8467 18 6 4.3199 -3.8226 1.5310 19 6 5.3244 -4.9289 1.9409 20 6 4.4425 -6.0214 2.5801 21 6 3.1581 -5.3246 3.0623 22 6 3.3038 -3.8322 2.7001 23 6 2.2591 -1.0915 -0.0005 24 35 1.6802 -2.8918 0.0000 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3633 0.8903 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 4.4052 1.3719 0.0101 29 1 4.5588 1.0553 2.4793 30 1 3.8296 -4.0759 0.5909 31 1 6.0407 -4.5438 2.6666 32 1 5.8410 -5.3202 1.0644 33 1 4.9619 -6.4734 3.4251 34 1 4.1985 -6.7843 1.8408 35 1 2.2908 -5.7488 2.5564 36 1 3.0537 -5.4392 4.1412 37 1 2.3466 -3.4229 2.3769 38 1 3.6911 -3.2696 3.5494 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585129835.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:53:05 Heat of formation + Delta-G solvation = 3.689257 kcal Electronic energy + Delta-G solvation = -26540.795947 eV Core-core repulsion = 22786.282387 eV Total energy + Delta-G solvation = -3754.513561 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 377.020 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.14446 -39.27500 -37.88300 -36.42536 -35.75003 -34.49264 -33.30052 -32.99954 -30.30526 -29.32790 -28.30605 -27.83396 -26.00635 -22.93916 -22.01696 -21.25799 -20.86852 -20.61936 -19.13315 -18.36748 -17.65320 -17.07881 -16.68519 -16.38007 -16.16852 -16.00810 -15.57279 -15.34808 -14.47543 -14.18273 -14.09047 -13.86042 -13.74909 -13.71212 -13.46104 -13.12627 -12.88796 -12.83833 -12.60093 -12.49875 -12.40547 -12.35242 -12.08303 -11.96116 -11.77639 -11.69764 -11.55330 -11.46654 -11.04613 -10.94196 -10.62976 -10.23055 -10.00323 -9.46037 -8.14269 -5.73119 -0.22758 0.01684 0.40194 1.45016 1.48993 1.59269 1.62547 1.63459 2.41469 2.77085 3.06779 3.33009 3.44281 3.83908 4.02700 4.03359 4.15046 4.22089 4.28252 4.46264 4.53060 4.58426 4.65293 4.81795 4.90991 4.93780 5.03827 5.19849 5.25812 5.28691 5.38604 5.41544 5.60589 5.68980 5.70524 5.77517 5.98654 6.39218 6.54220 7.25166 7.62305 8.82631 Molecular weight = 377.02amu Principal moments of inertia in cm(-1) A = 0.009655 B = 0.008077 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.356570 B = 3465.593167 C = 5111.370067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.346 5.346 3 N -0.301 5.301 4 C 0.172 3.828 5 C -0.716 4.716 6 S 2.706 3.294 7 O -0.998 6.998 8 O -1.009 7.009 9 N -0.850 5.850 10 C -0.304 4.304 11 H 0.090 0.910 12 C 0.009 3.991 13 N -0.876 5.876 14 Si 0.950 3.050 15 H -0.264 1.264 16 H -0.292 1.292 17 H -0.284 1.284 18 C 0.131 3.869 19 C -0.136 4.136 20 C -0.113 4.113 21 C -0.117 4.117 22 C -0.124 4.124 23 C 0.157 3.843 24 Br 0.056 6.944 25 H 0.093 0.907 26 H 0.114 0.886 27 H 0.109 0.891 28 H 0.184 0.816 29 H 0.265 0.735 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.123 -7.039 -1.927 13.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.128 5.128 3 N -0.123 5.123 4 C -0.015 4.015 5 C -0.818 4.818 6 S 2.799 3.201 7 O -0.988 6.988 8 O -0.999 6.999 9 N -0.681 5.681 10 C -0.435 4.435 11 H 0.108 0.892 12 C -0.195 4.195 13 N -0.516 5.516 14 Si 0.777 3.223 15 H -0.188 1.188 16 H -0.219 1.219 17 H -0.210 1.210 18 C 0.024 3.976 19 C -0.175 4.175 20 C -0.151 4.151 21 C -0.155 4.155 22 C -0.163 4.163 23 C -0.056 4.056 24 Br 0.139 6.861 25 H 0.112 0.888 26 H 0.133 0.867 27 H 0.128 0.872 28 H 0.201 0.799 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.792 -6.515 -2.653 13.731 hybrid contribution 0.860 1.062 0.847 1.607 sum -10.932 -5.453 -1.807 12.350 Atomic orbital electron populations 1.22452 0.71355 1.06803 1.05481 1.49137 1.08076 1.01535 1.54048 1.77268 1.01656 1.06631 1.26733 1.22946 0.95087 0.91969 0.91515 1.31222 1.14546 1.09506 1.26479 1.01229 0.73323 0.72613 0.72901 1.93359 1.50163 1.68146 1.87082 1.93437 1.87630 1.60914 1.57949 1.52723 1.64869 1.27162 1.23326 1.18766 1.29335 0.90575 1.04833 0.89230 1.25749 0.97590 0.98056 0.98142 1.70301 1.26097 1.07638 1.47545 0.85522 0.80881 0.78778 0.77094 1.18834 1.21884 1.21006 1.22139 0.93164 0.83482 0.98836 1.22689 0.98538 0.95815 1.00479 1.22043 0.95601 0.97013 1.00476 1.22070 0.97980 0.94178 1.01262 1.22628 0.98416 0.96789 0.98507 1.22548 0.91601 0.89061 1.02363 1.96748 1.89459 1.02817 1.97079 0.88840 0.86733 0.87216 0.79891 0.92456 0.89675 0.91738 0.92294 0.90874 0.90710 0.91038 0.91187 0.92214 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.72 11.28 127.77 1.44 3.16 16 2 N -0.35 -12.08 4.01 -363.84 -1.46 -13.54 16 3 N -0.30 -12.01 12.57 -57.03 -0.72 -12.73 16 4 C 0.17 7.57 9.38 85.23 0.80 8.37 16 5 C -0.72 -32.27 4.61 22.01 0.10 -32.17 16 6 S 2.71 133.29 4.80 -56.49 -0.27 133.02 16 7 O -1.00 -54.95 15.74 -128.00 -2.01 -56.96 16 8 O -1.01 -49.19 16.15 -128.00 -2.07 -51.26 16 9 N -0.85 -39.81 2.88 -316.72 -0.91 -40.72 16 10 C -0.30 -15.11 7.50 84.04 0.63 -14.48 16 11 H 0.09 4.35 6.79 -2.91 -0.02 4.33 16 12 C 0.01 0.45 3.84 84.86 0.33 0.77 16 13 N -0.88 -44.84 8.77 21.65 0.19 -44.65 16 14 Si 0.95 43.42 29.65 68.60 2.03 45.46 16 15 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 16 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 18 C 0.13 5.13 2.42 46.31 0.11 5.24 16 19 C -0.14 -4.67 6.40 31.70 0.20 -4.47 16 20 C -0.11 -2.97 6.80 31.32 0.21 -2.75 16 21 C -0.12 -3.10 6.80 31.32 0.21 -2.89 16 22 C -0.12 -4.34 6.13 31.67 0.19 -4.15 16 23 C 0.16 6.08 7.34 83.56 0.61 6.69 16 24 Br 0.06 1.77 27.38 -20.37 -0.56 1.21 16 25 H 0.09 1.83 8.14 -2.38 -0.02 1.82 16 26 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.11 1.89 7.66 -2.38 -0.02 1.87 16 28 H 0.18 7.97 8.06 -2.91 -0.02 7.95 16 29 H 0.27 13.39 8.18 -92.71 -0.76 12.63 16 30 H 0.09 3.28 5.06 -2.38 -0.01 3.27 16 31 H 0.06 2.38 6.59 -2.39 -0.02 2.37 16 32 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.06 2.04 5.92 -2.38 -0.01 2.02 16 38 H 0.06 2.41 7.11 -2.39 -0.02 2.39 16 Total: -1.00 -63.81 328.14 0.17 -63.64 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 1.11 Total: 13.21 kcal Atomic # 6 Polarization: -41.52 SS G_CDS: 4.85 Total: -36.68 kcal Atomic # 7 Polarization: -108.73 SS G_CDS: -2.90 Total: -111.63 kcal Atomic # 8 Polarization: -104.14 SS G_CDS: -4.08 Total: -108.22 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 133.29 SS G_CDS: -0.27 Total: 133.02 kcal Atomic # 35 Polarization: 1.77 SS G_CDS: -0.56 Total: 1.21 kcal Total: -63.81 0.17 -63.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585129835.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.328 kcal (2) G-P(sol) polarization free energy of solvation -63.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds