Wall clock time and date at job start Fri Apr 10 2020 14:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34414 * 125.56011 * 2 1 4 4 C 1.46732 * 106.52026 * 179.97438 * 3 2 1 5 5 C 1.47239 * 126.89054 * 179.97438 * 4 3 2 6 6 O 1.21638 * 119.99710 * 180.02562 * 5 4 3 7 7 N 1.34772 * 119.99706 * 0.04141 * 5 4 3 8 8 C 1.39928 * 120.00015 * 174.85238 * 7 5 4 9 9 C 1.38944 * 119.99941 * 326.25064 * 8 7 5 10 10 C 1.38003 * 119.99201 * 179.79296 * 9 8 7 11 11 C 1.38905 * 120.00655 * 0.45794 * 10 9 8 12 12 O 1.35787 * 119.99645 * 179.76995 * 11 10 9 13 13 C 1.34812 * 116.99451 * 185.70878 * 12 11 10 14 14 H 1.07995 * 120.00811 * 357.88360 * 13 12 11 15 15 C 1.38634 * 119.99513 * 177.88729 * 13 12 11 16 16 N 1.31572 * 119.99982 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00136 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46903 * 60.00120 * 17 15 13 19 19 H 1.48492 * 109.47109 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.46933 * 300.00442 * 17 15 13 21 21 C 1.38905 * 120.00577 * 359.79543 * 11 10 9 22 22 C 1.38000 * 120.00661 * 359.97389 * 21 11 10 23 23 C 1.36742 * 106.21950 * 359.97438 * 4 3 2 24 24 C 1.50708 * 125.85910 * 180.02562 * 23 4 3 25 25 N 1.35532 * 108.28703 * 0.26430 * 23 4 3 26 26 C 1.39778 * 124.95224 * 179.73355 * 25 23 4 27 27 C 1.38954 * 119.69017 * 48.86974 * 26 25 23 28 28 C 1.38402 * 119.10187 * 179.72975 * 27 26 25 29 29 C 1.38800 * 118.49155 * 0.53069 * 28 27 26 30 30 C 1.38121 * 119.28968 * 359.73398 * 29 28 27 31 31 N 1.31901 * 120.84211 * 359.97438 * 30 29 28 32 32 H 1.09000 * 109.46738 * 95.89070 * 1 2 3 33 33 H 1.08992 * 109.46903 * 215.89191 * 1 2 3 34 34 H 1.08997 * 109.46782 * 335.89549 * 1 2 3 35 35 H 1.08006 * 126.74063 * 359.95874 * 3 2 1 36 36 H 0.97000 * 120.00421 * 354.84722 * 7 5 4 37 37 H 1.07993 * 120.00092 * 359.97438 * 9 8 7 38 38 H 1.08006 * 119.99472 * 180.23478 * 10 9 8 39 39 H 0.97001 * 120.00094 * 179.97438 * 16 15 13 40 40 H 1.08003 * 120.00325 * 179.97438 * 21 11 10 41 41 H 1.07991 * 120.00581 * 179.97438 * 22 21 11 42 42 H 1.08992 * 109.47339 * 90.02368 * 24 23 4 43 43 H 1.09002 * 109.46784 * 210.02843 * 24 23 4 44 44 H 1.09002 * 109.46375 * 330.01940 * 24 23 4 45 45 H 1.07995 * 120.44470 * 359.97438 * 27 26 25 46 46 H 1.08005 * 120.75377 * 180.28082 * 28 27 26 47 47 H 1.07992 * 120.36051 * 179.70657 * 29 28 27 48 48 H 1.07996 * 119.57794 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2887 1.0935 0.0000 4 6 3.6758 0.6148 0.0006 5 6 4.8954 1.4396 0.0003 6 8 5.9893 0.9077 0.0005 7 7 4.7997 2.7839 0.0002 8 6 5.9539 3.5675 0.1087 9 6 7.0258 3.1235 0.8732 10 6 8.1657 3.8945 0.9766 11 6 8.2379 5.1186 0.3242 12 8 9.3578 5.8792 0.4298 13 6 9.3194 7.1058 -0.1282 14 1 8.4371 7.4298 -0.6601 15 6 10.4126 7.9514 -0.0192 16 7 11.4877 7.5565 0.6284 17 14 10.3598 9.6508 -0.7930 18 1 9.2431 10.4299 -0.2004 19 1 11.6437 10.3514 -0.5366 20 1 10.1507 9.5215 -2.2575 21 6 7.1644 5.5651 -0.4359 22 6 6.0261 4.7923 -0.5434 23 6 3.6085 -0.7510 0.0015 24 6 4.7850 -1.6928 0.0030 25 7 2.3023 -1.1124 -0.0044 26 6 1.8360 -2.4301 -0.0108 27 6 2.3518 -3.3471 0.8970 28 6 1.8773 -4.6472 0.8837 29 6 0.9074 -4.9886 -0.0487 30 6 0.4443 -4.0266 -0.9250 31 7 0.9114 -2.7938 -0.8845 32 1 -0.3633 -0.1055 -1.0223 33 1 -0.3633 -0.8325 0.6024 34 1 -0.3633 0.9380 0.4197 35 1 1.9604 2.1224 -0.0006 36 1 3.9308 3.2084 -0.0751 37 1 6.9680 2.1738 1.3840 38 1 9.0004 3.5476 1.5678 39 1 12.2528 8.1480 0.7043 40 1 7.2204 6.5171 -0.9428 41 1 5.1914 5.1396 -1.1340 42 1 5.0677 -1.9195 1.0309 43 1 4.5129 -2.6148 -0.5108 44 1 5.6252 -1.2252 -0.5103 45 1 3.1096 -3.0482 1.6059 46 1 2.2561 -5.3805 1.5803 47 1 0.5194 -5.9956 -0.0889 48 1 -0.3100 -4.2873 -1.6527 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023192680.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:56:24 Heat of formation + Delta-G solvation = 61.384193 kcal Electronic energy + Delta-G solvation = -32216.217157 eV Core-core repulsion = 27817.288209 eV Total energy + Delta-G solvation = -4398.928948 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 377.153 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -42.25261 -40.35359 -39.61013 -38.43236 -36.35542 -34.02948 -33.61514 -33.40136 -32.55132 -32.11211 -30.13820 -29.95945 -29.42812 -27.82902 -25.51370 -24.96171 -24.29267 -24.18456 -22.48014 -22.05486 -20.99526 -20.25001 -19.49878 -17.92040 -17.56664 -17.24915 -17.07278 -16.85994 -16.57336 -15.85382 -15.52282 -15.15723 -14.83946 -14.50284 -14.37992 -14.15780 -13.98013 -13.93305 -13.70451 -13.51795 -13.45128 -13.39440 -13.25309 -12.84253 -12.70986 -12.62968 -12.51750 -12.40322 -12.31262 -11.74271 -11.70542 -11.47729 -11.45558 -10.97813 -10.65996 -10.62336 -10.42584 -10.28527 -10.02952 -9.65438 -9.46906 -9.17558 -8.79259 -8.63160 -8.26710 -8.12276 -6.81578 -6.38338 -3.95942 0.20856 0.54610 1.53974 2.04616 2.13638 2.26899 2.43720 3.05521 3.17347 3.18010 3.21087 3.58110 3.65553 3.83393 4.02170 4.10581 4.23142 4.36768 4.39342 4.52362 4.66186 4.73926 4.87408 5.00060 5.00955 5.07066 5.17383 5.26158 5.29469 5.38376 5.39846 5.43027 5.46451 5.56216 5.61904 5.64900 5.77319 5.85283 5.87205 6.03360 6.23876 6.33592 6.38438 6.52294 6.66176 6.88419 6.93263 6.95965 7.10709 7.24629 7.28045 7.30306 7.48870 7.85949 7.90876 8.06128 8.57452 9.06997 9.78341 10.79745 Molecular weight = 377.15amu Principal moments of inertia in cm(-1) A = 0.027403 B = 0.001494 C = 0.001437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.555769 B =18742.717278 C =19485.285304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.036 3.964 3 C -0.163 4.163 4 C -0.210 4.210 5 C 0.585 3.415 6 O -0.534 6.534 7 N -0.655 5.655 8 C 0.044 3.956 9 C -0.067 4.067 10 C -0.177 4.177 11 C 0.145 3.855 12 O -0.178 6.178 13 C -0.391 4.391 14 H 0.091 0.909 15 C 0.039 3.961 16 N -0.864 5.864 17 Si 0.940 3.060 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.270 1.270 21 C -0.219 4.219 22 C -0.092 4.092 23 C 0.110 3.890 24 C -0.095 4.095 25 N -0.397 5.397 26 C 0.336 3.664 27 C -0.163 4.163 28 C -0.057 4.057 29 C -0.174 4.174 30 C 0.122 3.878 31 N -0.485 5.485 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.151 0.849 36 H 0.401 0.599 37 H 0.125 0.875 38 H 0.120 0.880 39 H 0.270 0.730 40 H 0.131 0.869 41 H 0.110 0.890 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.107 0.893 45 H 0.144 0.856 46 H 0.146 0.854 47 H 0.143 0.857 48 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.926 -23.908 -0.121 35.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.069 4.069 3 C -0.187 4.187 4 C -0.220 4.220 5 C 0.374 3.626 6 O -0.412 6.412 7 N -0.298 5.298 8 C -0.049 4.049 9 C -0.087 4.087 10 C -0.197 4.197 11 C 0.092 3.908 12 O -0.082 6.082 13 C -0.467 4.467 14 H 0.108 0.892 15 C -0.165 4.165 16 N -0.499 5.499 17 Si 0.765 3.235 18 H -0.196 1.196 19 H -0.203 1.203 20 H -0.196 1.196 21 C -0.239 4.239 22 C -0.112 4.112 23 C -0.001 4.001 24 C -0.152 4.152 25 N -0.074 5.074 26 C 0.110 3.890 27 C -0.185 4.185 28 C -0.083 4.083 29 C -0.194 4.194 30 C -0.036 4.036 31 N -0.195 5.195 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.169 0.831 36 H 0.236 0.764 37 H 0.143 0.857 38 H 0.138 0.862 39 H 0.079 0.921 40 H 0.148 0.852 41 H 0.128 0.872 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.126 0.874 45 H 0.162 0.838 46 H 0.163 0.837 47 H 0.161 0.839 48 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -25.146 -23.875 -0.534 34.679 hybrid contribution -0.329 0.492 -0.004 0.592 sum -25.475 -23.383 -0.539 34.584 Atomic orbital electron populations 1.20277 0.87489 1.02698 1.02973 1.20298 0.93741 0.84428 1.08442 1.21832 0.90670 0.97729 1.08468 1.20128 0.93147 0.91860 1.16860 1.17244 0.87553 0.81581 0.76214 1.90754 1.28005 1.72370 1.50109 1.42982 1.08751 1.05335 1.72768 1.17236 0.89190 0.93737 1.04723 1.20614 0.92247 0.98949 0.96919 1.20120 0.99255 0.94671 1.05644 1.19390 0.87023 0.91308 0.93109 1.83985 1.30054 1.26156 1.67973 1.21265 1.02733 0.88551 1.34189 0.89153 1.25263 0.94592 0.99621 0.97073 1.70039 1.04170 1.36800 1.38855 0.85793 0.77996 0.80393 0.79302 1.19552 1.20343 1.19565 1.20959 0.94312 1.02526 1.06056 1.20478 0.97926 0.94150 0.98676 1.20453 0.83266 0.94104 1.02327 1.20663 0.94510 0.96530 1.03542 1.40999 1.05598 1.02744 1.58084 1.18176 0.93967 0.84487 0.92384 1.21952 1.02841 0.94127 0.99567 1.21575 0.94267 0.95388 0.97079 1.22270 0.98494 1.01615 0.97058 1.22671 0.97183 0.86675 0.97069 1.67165 1.11639 1.20417 1.20321 0.90513 0.92303 0.90087 0.83095 0.76406 0.85720 0.86180 0.92052 0.85176 0.87172 0.90158 0.92154 0.87406 0.83812 0.83657 0.83869 0.81690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 9.50 36.01 0.34 -0.26 16 2 C 0.04 0.38 6.78 -81.75 -0.55 -0.17 16 3 C -0.16 -1.80 10.44 -37.50 -0.39 -2.19 16 4 C -0.21 -2.83 6.29 -103.35 -0.65 -3.48 16 5 C 0.58 9.41 7.54 -12.61 -0.10 9.31 16 6 O -0.53 -10.10 12.51 5.24 0.07 -10.03 16 7 N -0.65 -10.03 5.33 -10.84 -0.06 -10.09 16 8 C 0.04 0.82 6.28 -83.64 -0.52 0.29 16 9 C -0.07 -1.38 8.65 -39.41 -0.34 -1.72 16 10 C -0.18 -4.01 9.98 -39.42 -0.39 -4.40 16 11 C 0.15 3.63 6.65 -39.09 -0.26 3.37 16 12 O -0.18 -5.19 9.76 -0.01 0.00 -5.19 16 13 C -0.39 -11.07 9.48 30.88 0.29 -10.78 16 14 H 0.09 2.35 5.20 -52.49 -0.27 2.07 16 15 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 16 N -0.86 -25.68 13.67 55.48 0.76 -24.93 16 17 Si 0.94 20.75 29.55 -169.99 -5.02 15.73 16 18 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 21 C -0.22 -4.83 9.15 -39.42 -0.36 -5.19 16 22 C -0.09 -1.73 9.96 -39.41 -0.39 -2.12 16 23 C 0.11 1.36 6.73 -81.49 -0.55 0.82 16 24 C -0.10 -1.02 8.42 36.01 0.30 -0.72 16 25 N -0.40 -4.40 2.87 -54.13 -0.16 -4.56 16 26 C 0.34 3.17 6.07 -154.41 -0.94 2.23 16 27 C -0.16 -1.14 8.55 -39.26 -0.34 -1.48 16 28 C -0.06 -0.25 10.17 -39.31 -0.40 -0.65 16 29 C -0.17 -0.67 10.11 -39.42 -0.40 -1.07 16 30 C 0.12 0.68 11.18 -17.56 -0.20 0.48 16 31 N -0.48 -4.34 9.74 -12.30 -0.12 -4.46 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.46 7.94 -51.93 -0.41 0.05 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.15 1.27 7.70 -52.48 -0.40 0.87 16 36 H 0.40 4.80 7.95 -40.82 -0.32 4.47 16 37 H 0.12 2.47 6.43 -52.49 -0.34 2.13 16 38 H 0.12 2.63 8.06 -52.48 -0.42 2.20 16 39 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 40 H 0.13 2.83 5.64 -52.48 -0.30 2.54 16 41 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 42 H 0.08 0.75 8.00 -51.93 -0.42 0.33 16 43 H 0.06 0.55 7.32 -51.93 -0.38 0.17 16 44 H 0.11 1.39 6.46 -51.93 -0.34 1.05 16 45 H 0.14 0.91 7.35 -52.49 -0.39 0.52 16 46 H 0.15 0.26 8.06 -52.48 -0.42 -0.16 16 47 H 0.14 0.14 8.06 -52.49 -0.42 -0.28 16 48 H 0.17 0.45 8.06 -52.49 -0.42 0.03 16 LS Contribution 407.04 15.07 6.13 6.13 Total: -1.00 -35.98 407.04 -9.99 -45.97 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -5.66 Total: 8.19 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: -5.94 Total: -16.76 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: 0.43 Total: -44.04 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: 0.07 Total: -15.23 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.98 -9.99 -45.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023192680.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.354 kcal (2) G-P(sol) polarization free energy of solvation -35.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds