Wall clock time and date at job start Fri Apr 10 2020 15:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47476 * 2 1 4 4 C 1.46505 * 119.99796 * 270.00737 * 3 2 1 5 5 C 1.50700 * 109.46697 * 269.99539 * 4 3 2 6 6 H 1.07999 * 120.00062 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99969 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00204 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 119.99984 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47262 * 90.00513 * 9 7 5 11 11 H 1.48500 * 109.47351 * 210.00410 * 9 7 5 12 12 H 1.48500 * 109.47189 * 330.00400 * 9 7 5 13 13 C 1.34774 * 120.00195 * 89.99874 * 3 2 1 14 14 O 1.21284 * 120.00386 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99470 * 0.02562 * 13 3 2 16 16 N 1.46505 * 109.46603 * 179.97438 * 15 13 3 17 17 C 1.33795 * 124.17483 * 270.03573 * 16 15 13 18 18 O 1.21539 * 123.77276 * 359.96211 * 17 16 15 19 19 N 1.34869 * 112.49788 * 180.02562 * 17 16 15 20 20 C 1.47304 * 106.43925 * 359.86740 * 19 17 16 21 21 C 1.53002 * 110.60173 * 118.72757 * 20 19 17 22 22 C 1.50708 * 110.59877 * 241.52035 * 20 19 17 23 23 C 1.38214 * 120.00753 * 356.46968 * 22 20 19 24 24 C 1.38224 * 120.02197 * 180.02562 * 23 22 20 25 25 C 1.38265 * 120.05408 * 359.97438 * 24 23 22 26 26 C 1.38183 * 120.02323 * 359.97438 * 25 24 23 27 27 C 1.38437 * 120.01160 * 176.74494 * 22 20 19 28 28 F 1.35099 * 120.02745 * 0.02562 * 27 22 20 29 29 C 1.34768 * 124.17990 * 90.00235 * 16 15 13 30 30 O 1.21236 * 127.15584 * 0.06505 * 29 16 15 31 31 H 1.08996 * 109.47262 * 59.99432 * 1 2 3 32 32 H 1.09003 * 109.46927 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46479 * 299.99936 * 1 2 3 34 34 H 1.09007 * 109.46479 * 240.00064 * 2 1 3 35 35 H 1.08996 * 109.47262 * 120.00568 * 2 1 3 36 36 H 1.09000 * 109.47315 * 29.99132 * 4 3 2 37 37 H 1.08999 * 109.46843 * 149.99937 * 4 3 2 38 38 H 0.97003 * 120.00062 * 179.97438 * 8 7 5 39 39 H 1.08998 * 109.47235 * 60.00018 * 15 13 3 40 40 H 1.09000 * 109.47116 * 299.99094 * 15 13 3 41 41 H 0.97004 * 126.86624 * 179.97438 * 19 17 16 42 42 H 1.08993 * 109.47134 * 182.82578 * 21 20 19 43 43 H 1.08996 * 109.47305 * 302.83083 * 21 20 19 44 44 H 1.09006 * 109.46910 * 62.82627 * 21 20 19 45 45 H 1.08000 * 119.99525 * 0.03989 * 23 22 20 46 46 H 1.08004 * 119.97833 * 180.02562 * 24 23 22 47 47 H 1.07999 * 119.98941 * 180.02562 * 25 24 23 48 48 H 1.08002 * 120.01017 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7039 6 1 4.3426 1.2301 -1.0963 7 6 4.1493 2.3904 -2.8776 8 7 5.3912 2.1833 -3.2576 9 14 3.0130 3.4358 -3.9288 10 1 3.1158 4.8560 -3.5071 11 1 3.4065 3.3135 -5.3555 12 1 1.6134 2.9692 -3.7596 13 6 2.2431 2.0165 1.1672 14 8 2.6470 3.1601 1.1672 15 6 1.9924 1.3059 2.4722 16 7 2.3103 2.2033 3.5858 17 6 3.5171 2.2951 4.1561 18 8 4.4801 1.6401 3.8087 19 7 3.5461 3.1947 5.1605 20 6 2.1892 3.7604 5.2528 21 6 1.5760 3.4677 6.6237 22 6 2.2144 5.2443 4.9909 23 6 3.4192 5.8895 4.7847 24 6 3.4428 7.2506 4.5451 25 6 2.2614 7.9682 4.5107 26 6 1.0556 7.3251 4.7156 27 6 1.0313 5.9627 4.9625 28 9 -0.1464 5.3341 5.1700 29 6 1.4234 3.0388 4.1617 30 8 0.2560 3.1832 3.8681 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3632 0.5139 0.8901 34 1 1.8933 -0.5139 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 1.5817 1.6876 -2.0284 37 1 2.0956 3.1410 -1.1384 38 1 5.7173 2.5738 -4.0835 39 1 2.6229 0.4186 2.5298 40 1 0.9445 1.0115 2.5302 41 1 4.3093 3.4259 5.7128 42 1 0.5557 3.8498 6.6544 43 1 1.5662 2.3914 6.7951 44 1 2.1694 3.9536 7.3984 45 1 4.3426 5.3299 4.8107 46 1 4.3846 7.7539 4.3836 47 1 2.2810 9.0315 4.3230 48 1 0.1330 7.8857 4.6883 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120506340.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:26 Heat of formation + Delta-G solvation = -72.635038 kcal Electronic energy + Delta-G solvation = -36398.578784 eV Core-core repulsion = 31563.069102 eV Total energy + Delta-G solvation = -4835.509682 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 377.158 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -49.03757 -42.70395 -39.47807 -38.97193 -38.56637 -36.46535 -35.60831 -35.00387 -32.73063 -31.94013 -30.95480 -30.40867 -29.66109 -29.27991 -27.18527 -25.07090 -23.46269 -23.08794 -22.98335 -22.67581 -21.50302 -20.55428 -18.66614 -18.32952 -17.75721 -17.30451 -16.89586 -16.80199 -16.55840 -16.30278 -15.92521 -15.68913 -15.45663 -15.35164 -14.87786 -14.72559 -14.54801 -14.18065 -14.06506 -13.97486 -13.70935 -13.53179 -13.34334 -13.10009 -12.85349 -12.75016 -12.63020 -12.42946 -12.33193 -12.09089 -11.94481 -11.76316 -11.44234 -11.34694 -10.99937 -10.90231 -10.75207 -10.50707 -10.32747 -10.24206 -10.15472 -9.77155 -9.52178 -9.27173 -8.97358 -8.90217 -8.57410 -7.78399 -6.06708 -4.05567 0.76582 0.94363 1.58415 2.02407 2.84966 2.99275 3.19473 3.28886 3.29911 3.35665 3.37754 3.71093 3.79844 3.92936 4.04561 4.37832 4.40712 4.52286 4.73297 4.83052 4.86063 4.98739 5.04688 5.10879 5.15327 5.17697 5.26240 5.30301 5.40613 5.47445 5.49809 5.54923 5.61492 5.69235 5.76948 5.82534 5.95667 5.98979 6.12479 6.13408 6.39027 6.58011 6.62184 6.67997 6.92676 6.95339 7.26995 7.30854 7.61521 8.04559 8.16083 8.47502 8.83381 8.98240 9.52963 11.06649 Molecular weight = 377.16amu Principal moments of inertia in cm(-1) A = 0.009604 B = 0.003259 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.613245 B = 8588.448765 C = 9504.550930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.102 3.898 3 N -0.587 5.587 4 C 0.218 3.782 5 C -0.529 4.529 6 H 0.076 0.924 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.875 3.125 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.497 3.503 14 O -0.529 6.529 15 C 0.098 3.902 16 N -0.556 5.556 17 C 0.711 3.289 18 O -0.527 6.527 19 N -0.721 5.721 20 C 0.172 3.828 21 C -0.148 4.148 22 C -0.134 4.134 23 C -0.066 4.066 24 C -0.128 4.128 25 C -0.081 4.081 26 C -0.155 4.155 27 C 0.125 3.875 28 F -0.122 7.122 29 C 0.538 3.462 30 O -0.448 6.448 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.032 0.968 37 H 0.035 0.965 38 H 0.264 0.736 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.440 0.560 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.135 0.865 46 H 0.134 0.866 47 H 0.135 0.865 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.858 4.542 22.519 24.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.022 4.022 3 N -0.319 5.319 4 C 0.098 3.902 5 C -0.567 4.567 6 H 0.094 0.906 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.702 3.298 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.281 3.719 14 O -0.405 6.405 15 C -0.027 4.027 16 N -0.301 5.301 17 C 0.412 3.588 18 O -0.398 6.398 19 N -0.386 5.386 20 C 0.081 3.919 21 C -0.206 4.206 22 C -0.136 4.136 23 C -0.084 4.084 24 C -0.146 4.146 25 C -0.099 4.099 26 C -0.174 4.174 27 C 0.105 3.895 28 F -0.100 7.100 29 C 0.323 3.677 30 O -0.315 6.315 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.142 0.858 40 H 0.137 0.863 41 H 0.285 0.715 42 H 0.108 0.892 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.153 0.847 46 H 0.152 0.848 47 H 0.153 0.847 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.715 4.793 21.905 24.437 hybrid contribution -0.212 0.528 -0.626 0.846 sum -9.926 5.321 21.279 24.075 Atomic orbital electron populations 1.22256 0.96472 1.01808 1.02458 1.21533 0.93584 0.83590 1.03486 1.47885 1.63819 1.13467 1.06713 1.19673 0.97477 0.93322 0.79758 1.21329 0.95261 1.32951 1.07167 0.90623 1.24842 0.94972 0.95777 0.97323 1.69901 1.15108 1.44942 1.23512 0.86873 0.81517 0.81626 0.79809 1.19985 1.21013 1.19052 1.20335 0.79030 0.87330 0.85166 1.90696 1.45134 1.17837 1.86831 1.21676 1.04407 0.92739 0.83876 1.45810 1.11784 1.39819 1.32722 1.15806 0.82717 0.80727 0.79568 1.91055 1.35267 1.47730 1.65779 1.45590 1.12211 1.43013 1.37804 1.19976 0.83725 0.90924 0.97306 1.22080 1.02700 1.03533 0.92252 1.19481 0.93708 0.92988 1.07423 1.20882 0.96794 0.94658 0.96109 1.21220 0.98973 0.93880 1.00556 1.21119 0.91514 1.00469 0.96814 1.21158 1.00092 0.92540 1.03638 1.17411 0.80654 0.90860 1.00595 1.91561 1.44511 1.82198 1.91735 1.20506 0.86300 0.78743 0.82173 1.90811 1.13709 1.62593 1.64389 0.92027 0.91686 0.92912 0.89208 0.91361 0.95010 0.94678 0.92580 0.85804 0.86259 0.71510 0.89193 0.90664 0.90005 0.84706 0.84795 0.84698 0.84298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 2 C 0.10 1.58 5.93 -4.04 -0.02 1.55 16 3 N -0.59 -12.33 2.46 -175.05 -0.43 -12.76 16 4 C 0.22 5.45 4.23 -5.19 -0.02 5.43 16 5 C -0.53 -15.52 9.94 -34.44 -0.34 -15.86 16 6 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 7 C 0.07 2.18 5.47 -17.82 -0.10 2.08 16 8 N -0.90 -28.11 13.96 55.43 0.77 -27.34 16 9 Si 0.87 21.97 27.47 -169.99 -4.67 17.30 16 10 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 13 C 0.50 10.64 7.74 -10.99 -0.09 10.56 16 14 O -0.53 -13.66 16.01 5.55 0.09 -13.57 16 15 C 0.10 1.57 4.73 -5.19 -0.02 1.54 16 16 N -0.56 -8.96 2.09 -121.92 -0.26 -9.22 16 17 C 0.71 11.32 8.63 -87.71 -0.76 10.56 16 18 O -0.53 -10.18 17.48 5.33 0.09 -10.09 16 19 N -0.72 -8.14 4.67 -53.93 -0.25 -8.39 16 20 C 0.17 2.00 1.03 -133.24 -0.14 1.86 16 21 C -0.15 -1.21 8.77 37.16 0.33 -0.88 16 22 C -0.13 -1.60 4.83 -104.55 -0.50 -2.10 16 23 C -0.07 -0.72 9.37 -39.60 -0.37 -1.09 16 24 C -0.13 -1.22 10.04 -39.58 -0.40 -1.61 16 25 C -0.08 -0.72 10.04 -39.59 -0.40 -1.12 16 26 C -0.16 -1.57 10.03 -39.51 -0.40 -1.97 16 27 C 0.12 1.52 6.82 -39.42 -0.27 1.25 16 28 F -0.12 -1.60 13.28 2.25 0.03 -1.57 16 29 C 0.54 8.20 6.77 -10.55 -0.07 8.13 16 30 O -0.45 -7.62 15.84 5.60 0.09 -7.53 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.64 7.22 -51.93 -0.38 0.27 16 34 H 0.09 1.44 8.07 -51.93 -0.42 1.03 16 35 H 0.07 0.87 6.44 -51.93 -0.33 0.53 16 36 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 37 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 38 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 39 H 0.12 1.78 7.12 -51.93 -0.37 1.41 16 40 H 0.12 1.56 7.05 -51.93 -0.37 1.19 16 41 H 0.44 3.53 8.45 -40.82 -0.34 3.19 16 42 H 0.09 0.79 6.44 -51.93 -0.33 0.45 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.14 1.31 6.65 -52.49 -0.35 0.96 16 46 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 47 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 48 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 403.15 15.07 6.08 6.08 Total: -1.00 -39.86 403.15 -7.81 -47.67 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.17 Total: 2.88 kcal Atomic # 6 Polarization: 19.73 SS G_CDS: -3.19 Total: 16.54 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: -0.16 Total: -57.71 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: 0.27 Total: -31.20 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.03 Total: -1.57 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -39.86 -7.81 -47.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120506340.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.964 kcal (2) G-P(sol) polarization free energy of solvation -39.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds