Wall clock time and date at job start Fri Apr 10 2020 14:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35971 * 117.00123 * 2 1 4 4 C 1.38717 * 119.98729 * 179.97438 * 3 2 1 5 5 C 1.38082 * 120.02207 * 180.02562 * 4 3 2 6 6 C 1.38863 * 119.97914 * 359.97438 * 5 4 3 7 7 N 1.40056 * 120.01399 * 179.97438 * 6 5 4 8 8 C 1.34779 * 119.99941 * 146.78802 * 7 6 5 9 9 O 1.21636 * 119.99866 * 354.72395 * 8 7 6 10 10 C 1.47268 * 120.00437 * 174.73132 * 8 7 6 11 11 C 1.37972 * 126.80520 * 359.97140 * 10 8 7 12 12 N 1.34172 * 107.88517 * 180.02562 * 11 10 8 13 13 C 1.46495 * 125.16331 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47235 * 124.99585 * 13 12 11 15 15 H 1.08000 * 119.99972 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00115 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00343 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00291 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47327 * 89.99251 * 18 16 14 20 20 H 1.48495 * 109.47495 * 209.99887 * 18 16 14 21 21 H 1.48501 * 109.46843 * 329.99686 * 18 16 14 22 22 N 1.39772 * 109.67166 * 359.76284 * 12 11 10 23 23 C 1.31370 * 109.08001 * 0.40309 * 22 12 11 24 24 C 1.48289 * 126.50717 * 179.87773 * 23 22 12 25 25 C 1.39378 * 120.12903 * 324.69140 * 24 23 22 26 26 C 1.38006 * 119.87371 * 179.97438 * 25 24 23 27 27 C 1.38335 * 120.12670 * 359.97438 * 26 25 24 28 28 C 1.38329 * 120.25076 * 0.02562 * 27 26 25 29 29 C 1.38006 * 120.12361 * 0.02562 * 28 27 26 30 30 C 1.38854 * 119.96799 * 0.25928 * 6 5 4 31 31 C 1.38091 * 119.98543 * 359.50827 * 30 6 5 32 32 H 1.08998 * 109.47450 * 299.99806 * 1 2 3 33 33 H 1.09004 * 109.47222 * 59.99956 * 1 2 3 34 34 H 1.08998 * 109.47084 * 180.02562 * 1 2 3 35 35 H 1.08005 * 119.99147 * 359.97438 * 4 3 2 36 36 H 1.08000 * 120.01243 * 179.97438 * 5 4 3 37 37 H 0.97000 * 120.00511 * 326.79315 * 7 6 5 38 38 H 1.08000 * 126.06218 * 0.02562 * 11 10 8 39 39 H 1.09002 * 109.46797 * 244.99175 * 13 12 11 40 40 H 1.09002 * 109.47334 * 4.99611 * 13 12 11 41 41 H 0.96999 * 120.00453 * 179.97438 * 17 16 14 42 42 H 1.07997 * 120.06181 * 359.95119 * 25 24 23 43 43 H 1.08003 * 119.93749 * 179.97438 * 26 25 24 44 44 H 1.08001 * 119.87268 * 179.74499 * 27 26 25 45 45 H 1.07995 * 119.93301 * 179.97438 * 28 27 26 46 46 H 1.08005 * 120.06097 * 180.02562 * 29 28 27 47 47 H 1.08002 * 120.00632 * 179.74420 * 30 6 5 48 48 H 1.07992 * 119.99183 * 180.23460 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4316 1.2838 0.0005 5 6 4.0593 2.5137 0.0011 6 6 3.3033 3.6785 0.0005 7 7 3.9391 4.9264 0.0016 8 6 3.3757 5.9704 -0.6381 9 8 2.3658 5.8073 -1.2961 10 6 3.9828 7.3085 -0.5406 11 6 5.1195 7.6513 0.1623 12 7 5.3290 8.9655 -0.0084 13 6 6.4375 9.7258 0.5740 14 6 7.1874 10.4395 -0.5212 15 1 6.8703 10.3366 -1.5484 16 6 8.2790 11.2229 -0.2119 17 7 8.6655 11.3478 1.0389 18 14 9.2089 12.1069 -1.5694 19 1 8.6160 13.4519 -1.7809 20 1 10.6349 12.2501 -1.1806 21 1 9.1151 11.3215 -2.8262 22 7 4.3324 9.4978 -0.8313 23 6 3.4990 8.5406 -1.1706 24 6 2.3002 8.6790 -2.0324 25 6 1.5345 9.8426 -1.9841 26 6 0.4202 9.9661 -2.7888 27 6 0.0630 8.9379 -3.6426 28 6 0.8192 7.7808 -3.6947 29 6 1.9349 7.6459 -2.8938 30 6 1.9167 3.6054 0.0049 31 6 1.2904 2.3747 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3633 -1.0276 0.0005 35 1 4.0195 0.3777 0.0014 36 1 5.1378 2.5698 0.0019 37 1 4.7851 5.0394 0.4627 38 1 5.7322 6.9806 0.7464 39 1 6.0448 10.4565 1.2812 40 1 7.1125 9.0448 1.0924 41 1 9.4337 11.8987 1.2565 42 1 1.8125 10.6459 -1.3180 43 1 -0.1742 10.8671 -2.7520 44 1 -0.8122 9.0372 -4.2676 45 1 0.5354 6.9812 -4.3628 46 1 2.5249 6.7422 -2.9356 47 1 1.3281 4.5110 0.0087 48 1 0.2120 2.3178 -0.0009 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003355975.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:51 Heat of formation + Delta-G solvation = 60.211462 kcal Electronic energy + Delta-G solvation = -32740.326343 eV Core-core repulsion = 28341.346542 eV Total energy + Delta-G solvation = -4398.979801 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 377.153 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.93553 -40.33152 -39.23516 -38.55048 -37.24293 -34.35995 -33.93434 -32.38130 -31.25163 -30.77255 -30.51252 -29.98417 -28.89572 -27.42353 -26.86473 -23.83721 -23.65825 -22.93275 -22.29231 -21.91668 -21.30882 -19.78886 -19.41484 -18.39030 -17.96149 -16.88861 -16.77760 -16.54262 -16.11603 -15.91527 -15.56237 -15.20754 -14.90466 -14.70293 -14.44273 -14.40874 -14.13770 -13.91651 -13.87558 -13.43342 -13.24426 -13.03554 -12.93446 -12.84048 -12.69458 -12.37244 -12.20545 -12.15440 -11.87359 -11.56106 -11.21896 -11.06268 -11.00560 -10.97161 -10.82966 -10.40924 -10.24953 -9.99024 -9.92881 -9.57364 -9.25168 -9.11411 -8.76802 -8.56359 -8.39496 -7.89929 -7.69390 -6.39364 -4.45496 1.14049 1.24068 1.37729 1.76220 1.97552 2.77331 3.00071 3.10620 3.16531 3.23001 3.25384 3.30727 3.50778 3.81037 4.19360 4.21743 4.61405 4.68891 4.72141 4.87678 4.89431 4.90387 4.98955 5.12276 5.19563 5.21218 5.24251 5.25454 5.28856 5.37231 5.49854 5.63153 5.73419 5.76323 5.81878 5.90376 5.95968 6.18560 6.25356 6.27582 6.34295 6.37245 6.49901 6.66406 6.75809 6.80196 6.82435 6.89698 7.04541 7.22740 7.28286 7.42195 7.49088 7.65692 7.67482 8.22652 8.35538 8.62051 9.21610 10.69542 Molecular weight = 377.15amu Principal moments of inertia in cm(-1) A = 0.008334 B = 0.002390 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3358.731033 B =11710.900796 C =14490.836174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.103 3.897 4 C -0.132 4.132 5 C -0.111 4.111 6 C 0.125 3.875 7 N -0.676 5.676 8 C 0.601 3.399 9 O -0.526 6.526 10 C -0.317 4.317 11 C 0.103 3.897 12 N -0.308 5.308 13 C 0.249 3.751 14 C -0.534 4.534 15 H 0.071 0.929 16 C 0.065 3.935 17 N -0.893 5.893 18 Si 0.909 3.091 19 H -0.276 1.276 20 H -0.283 1.283 21 H -0.271 1.271 22 N -0.259 5.259 23 C 0.142 3.858 24 C -0.013 4.013 25 C -0.090 4.090 26 C -0.136 4.136 27 C -0.116 4.116 28 C -0.133 4.133 29 C -0.057 4.057 30 C -0.080 4.080 31 C -0.187 4.187 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.097 0.903 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.408 0.592 38 H 0.177 0.823 39 H 0.052 0.948 40 H 0.060 0.940 41 H 0.269 0.731 42 H 0.124 0.876 43 H 0.119 0.881 44 H 0.116 0.884 45 H 0.118 0.882 46 H 0.141 0.859 47 H 0.140 0.860 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.138 -17.588 -1.029 22.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.058 3.942 4 C -0.151 4.151 5 C -0.131 4.131 6 C 0.031 3.969 7 N -0.321 5.321 8 C 0.394 3.606 9 O -0.404 6.404 10 C -0.333 4.333 11 C -0.052 4.052 12 N -0.083 5.083 13 C 0.133 3.867 14 C -0.572 4.572 15 H 0.089 0.911 16 C -0.139 4.139 17 N -0.530 5.530 18 Si 0.736 3.264 19 H -0.202 1.202 20 H -0.209 1.209 21 H -0.196 1.196 22 N -0.079 5.079 23 C -0.025 4.025 24 C -0.015 4.015 25 C -0.110 4.110 26 C -0.154 4.154 27 C -0.135 4.135 28 C -0.151 4.151 29 C -0.077 4.077 30 C -0.101 4.101 31 C -0.206 4.206 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.116 0.884 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.243 0.757 38 H 0.194 0.806 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.142 0.858 43 H 0.137 0.863 44 H 0.134 0.866 45 H 0.136 0.864 46 H 0.159 0.841 47 H 0.158 0.842 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.154 -16.343 -1.374 21.663 hybrid contribution 0.781 -0.075 -0.115 0.793 sum -13.373 -16.418 -1.489 21.227 Atomic orbital electron populations 1.23026 0.78592 1.03700 1.01416 1.86052 1.21211 1.27026 1.89176 1.18982 0.92331 0.84088 0.98846 1.20147 0.91269 0.97965 1.05731 1.20723 0.99808 0.90395 1.02200 1.17629 0.91863 0.84730 1.02672 1.43430 1.25790 1.08020 1.54840 1.17353 0.83246 0.82675 0.77359 1.90726 1.25064 1.84446 1.40153 1.20769 1.03009 0.93739 1.15806 1.22926 0.96222 0.87789 0.98292 1.49300 1.20426 1.05710 1.32850 1.19972 0.80078 0.92014 0.94683 1.21180 1.12494 1.29854 0.93700 0.91095 1.24931 0.96763 0.95959 0.96199 1.69901 1.26674 1.39212 1.17248 0.86295 0.78570 0.80052 0.81461 1.20170 1.20884 1.19605 1.77515 0.99277 1.21225 1.09933 1.21745 0.94538 0.89432 0.96791 1.17713 0.92422 0.95031 0.96294 1.21231 0.94362 0.96649 0.98710 1.20954 0.97662 0.99135 0.97621 1.21156 0.99506 0.94033 0.98804 1.21004 0.96141 0.97746 1.00251 1.21554 0.96202 0.97528 0.92384 1.21010 0.93143 0.98104 0.97814 1.21119 1.00010 0.91774 1.07700 0.92722 0.92649 0.88437 0.85015 0.84951 0.75663 0.80644 0.93008 0.92239 0.92121 0.85812 0.86279 0.86622 0.86370 0.84143 0.84222 0.85369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.25 10.50 -19.65 -0.21 -3.45 16 3 C 0.10 1.12 6.69 -39.22 -0.26 0.86 16 4 C -0.13 -1.35 9.98 -39.46 -0.39 -1.74 16 5 C -0.11 -1.12 9.96 -39.41 -0.39 -1.52 16 6 C 0.13 1.50 6.28 -83.64 -0.53 0.98 16 7 N -0.68 -8.10 5.33 -10.84 -0.06 -8.16 16 8 C 0.60 9.16 7.41 -12.59 -0.09 9.07 16 9 O -0.53 -8.86 10.13 5.25 0.05 -8.80 16 10 C -0.32 -5.39 6.26 -102.96 -0.64 -6.03 16 11 C 0.10 1.68 10.89 -16.63 -0.18 1.50 16 12 N -0.31 -6.34 3.62 -62.03 -0.22 -6.57 16 13 C 0.25 5.74 6.21 -5.20 -0.03 5.71 16 14 C -0.53 -13.95 9.20 -34.44 -0.32 -14.26 16 15 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 16 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -23.97 13.29 55.43 0.74 -23.23 16 18 Si 0.91 20.61 29.54 -169.99 -5.02 15.59 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 N -0.26 -5.63 12.27 34.57 0.42 -5.20 16 23 C 0.14 2.76 6.94 -80.56 -0.56 2.20 16 24 C -0.01 -0.22 5.73 -104.91 -0.60 -0.83 16 25 C -0.09 -1.47 9.76 -39.24 -0.38 -1.85 16 26 C -0.14 -1.86 10.03 -39.63 -0.40 -2.26 16 27 C -0.12 -1.50 10.04 -39.51 -0.40 -1.90 16 28 C -0.13 -1.87 10.03 -39.63 -0.40 -2.26 16 29 C -0.06 -0.94 7.77 -39.24 -0.31 -1.25 16 30 C -0.08 -1.01 8.65 -39.41 -0.34 -1.35 16 31 C -0.19 -2.04 9.03 -39.45 -0.36 -2.40 16 32 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 33 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 34 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 36 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 37 H 0.41 3.77 7.79 -40.82 -0.32 3.45 16 38 H 0.18 2.04 7.49 -52.49 -0.39 1.65 16 39 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.06 1.31 8.05 -51.93 -0.42 0.89 16 41 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 42 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 43 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 44 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 45 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 46 H 0.14 2.41 5.64 -52.48 -0.30 2.11 16 47 H 0.14 1.94 6.42 -52.49 -0.34 1.60 16 48 H 0.13 1.15 6.29 -52.49 -0.33 0.82 16 LS Contribution 409.89 15.07 6.18 6.18 Total: -1.00 -31.33 409.89 -9.62 -40.95 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -5.82 Total: 7.25 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -5.69 Total: -14.55 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 0.88 Total: -43.16 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -0.15 Total: -12.26 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.33 -9.62 -40.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003355975.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.161 kcal (2) G-P(sol) polarization free energy of solvation -31.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds