Wall clock time and date at job start Fri Apr 10 2020 14:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35971 * 117.00123 * 2 1 4 4 C 1.38717 * 119.98729 * 179.97438 * 3 2 1 5 5 C 1.38082 * 120.02207 * 180.02562 * 4 3 2 6 6 C 1.38863 * 119.97914 * 359.97438 * 5 4 3 7 7 N 1.40056 * 120.01399 * 179.97438 * 6 5 4 8 8 C 1.34779 * 119.99941 * 146.78802 * 7 6 5 9 9 O 1.21636 * 119.99866 * 354.72395 * 8 7 6 10 10 C 1.47268 * 120.00437 * 174.73132 * 8 7 6 11 11 C 1.37972 * 126.80520 * 359.97140 * 10 8 7 12 12 N 1.34172 * 107.88517 * 180.02562 * 11 10 8 13 13 C 1.46495 * 125.16331 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47235 * 124.99585 * 13 12 11 15 15 H 1.08000 * 119.99972 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00115 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00343 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00291 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47327 * 89.99251 * 18 16 14 20 20 H 1.48495 * 109.47495 * 209.99887 * 18 16 14 21 21 H 1.48501 * 109.46843 * 329.99686 * 18 16 14 22 22 N 1.39772 * 109.67166 * 359.76284 * 12 11 10 23 23 C 1.31370 * 109.08001 * 0.40309 * 22 12 11 24 24 C 1.48289 * 126.50717 * 179.87773 * 23 22 12 25 25 C 1.39378 * 120.12903 * 324.69140 * 24 23 22 26 26 C 1.38006 * 119.87371 * 179.97438 * 25 24 23 27 27 C 1.38335 * 120.12670 * 359.97438 * 26 25 24 28 28 C 1.38329 * 120.25076 * 0.02562 * 27 26 25 29 29 C 1.38006 * 120.12361 * 0.02562 * 28 27 26 30 30 C 1.38854 * 119.96799 * 0.25928 * 6 5 4 31 31 C 1.38091 * 119.98543 * 359.50827 * 30 6 5 32 32 H 1.08998 * 109.47450 * 299.99806 * 1 2 3 33 33 H 1.09004 * 109.47222 * 59.99956 * 1 2 3 34 34 H 1.08998 * 109.47084 * 180.02562 * 1 2 3 35 35 H 1.08005 * 119.99147 * 359.97438 * 4 3 2 36 36 H 1.08000 * 120.01243 * 179.97438 * 5 4 3 37 37 H 0.97000 * 120.00511 * 326.79315 * 7 6 5 38 38 H 1.08000 * 126.06218 * 0.02562 * 11 10 8 39 39 H 1.09002 * 109.46797 * 244.99175 * 13 12 11 40 40 H 1.09002 * 109.47334 * 4.99611 * 13 12 11 41 41 H 0.96999 * 120.00453 * 179.97438 * 17 16 14 42 42 H 1.07997 * 120.06181 * 359.95119 * 25 24 23 43 43 H 1.08003 * 119.93749 * 179.97438 * 26 25 24 44 44 H 1.08001 * 119.87268 * 179.74499 * 27 26 25 45 45 H 1.07995 * 119.93301 * 179.97438 * 28 27 26 46 46 H 1.08005 * 120.06097 * 180.02562 * 29 28 27 47 47 H 1.08002 * 120.00632 * 179.74420 * 30 6 5 48 48 H 1.07992 * 119.99183 * 180.23460 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4316 1.2838 0.0005 5 6 4.0593 2.5137 0.0011 6 6 3.3033 3.6785 0.0005 7 7 3.9391 4.9264 0.0016 8 6 3.3757 5.9704 -0.6381 9 8 2.3658 5.8073 -1.2961 10 6 3.9828 7.3085 -0.5406 11 6 5.1195 7.6513 0.1623 12 7 5.3290 8.9655 -0.0084 13 6 6.4375 9.7258 0.5740 14 6 7.1874 10.4395 -0.5212 15 1 6.8703 10.3366 -1.5484 16 6 8.2790 11.2229 -0.2119 17 7 8.6655 11.3478 1.0389 18 14 9.2089 12.1069 -1.5694 19 1 8.6160 13.4519 -1.7809 20 1 10.6349 12.2501 -1.1806 21 1 9.1151 11.3215 -2.8262 22 7 4.3324 9.4978 -0.8313 23 6 3.4990 8.5406 -1.1706 24 6 2.3002 8.6790 -2.0324 25 6 1.5345 9.8426 -1.9841 26 6 0.4202 9.9661 -2.7888 27 6 0.0630 8.9379 -3.6426 28 6 0.8192 7.7808 -3.6947 29 6 1.9349 7.6459 -2.8938 30 6 1.9167 3.6054 0.0049 31 6 1.2904 2.3747 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3633 -1.0276 0.0005 35 1 4.0195 0.3777 0.0014 36 1 5.1378 2.5698 0.0019 37 1 4.7851 5.0394 0.4627 38 1 5.7322 6.9806 0.7464 39 1 6.0448 10.4565 1.2812 40 1 7.1125 9.0448 1.0924 41 1 9.4337 11.8987 1.2565 42 1 1.8125 10.6459 -1.3180 43 1 -0.1742 10.8671 -2.7520 44 1 -0.8122 9.0372 -4.2676 45 1 0.5354 6.9812 -4.3628 46 1 2.5249 6.7422 -2.9356 47 1 1.3281 4.5110 0.0087 48 1 0.2120 2.3178 -0.0009 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003355975.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:50 Heat of formation + Delta-G solvation = 43.150097 kcal Electronic energy + Delta-G solvation = -32741.066180 eV Core-core repulsion = 28341.346542 eV Total energy + Delta-G solvation = -4399.719637 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 377.153 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.23556 -41.31408 -40.24374 -39.71837 -38.15469 -35.74503 -35.37862 -33.98747 -32.16239 -31.97866 -31.72819 -31.30957 -29.87176 -28.79268 -27.81283 -25.51302 -24.79853 -23.90814 -23.44069 -23.06301 -22.47422 -21.02388 -20.71017 -19.33530 -18.98734 -18.65173 -17.90332 -17.73895 -17.24458 -16.82745 -16.56576 -16.53814 -16.33745 -15.94546 -15.60521 -15.55774 -15.43285 -15.09506 -14.76021 -14.61848 -14.32369 -14.18553 -14.13158 -14.05262 -13.70743 -13.65097 -13.52712 -13.41770 -12.97455 -12.78443 -12.77001 -12.35387 -12.34628 -12.18588 -12.07657 -11.81549 -11.73328 -11.60908 -11.04757 -10.82279 -10.69479 -10.62271 -9.95731 -9.79230 -9.70936 -9.22022 -8.63305 -8.38312 -6.51089 0.06694 0.30603 0.39301 0.59471 0.73619 1.35599 1.36469 1.40902 1.48183 1.63598 2.12438 2.31355 2.36514 2.45490 2.86964 2.94843 3.00888 3.39769 3.59988 3.86158 3.94750 4.05586 4.11467 4.18782 4.26935 4.28555 4.37392 4.37726 4.41272 4.42609 4.52772 4.62143 4.66079 4.71957 4.76017 4.86960 4.92138 4.93970 5.04923 5.09893 5.23799 5.33784 5.38482 5.41704 5.49699 5.51733 5.63541 5.68289 5.70889 5.80513 5.88190 6.01700 6.14124 6.47347 6.49425 6.56808 6.78346 7.18927 7.23140 8.69595 Molecular weight = 377.15amu Principal moments of inertia in cm(-1) A = 0.008334 B = 0.002390 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3358.731033 B =11710.900796 C =14490.836174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.333 6.333 3 C 0.099 3.901 4 C -0.136 4.136 5 C -0.101 4.101 6 C 0.105 3.895 7 N -0.660 5.660 8 C 0.603 3.397 9 O -0.543 6.543 10 C -0.320 4.320 11 C 0.116 3.884 12 N -0.332 5.332 13 C 0.264 3.736 14 C -0.549 4.549 15 H 0.050 0.950 16 C 0.024 3.976 17 N -0.915 5.915 18 Si 0.965 3.035 19 H -0.276 1.276 20 H -0.270 1.270 21 H -0.274 1.274 22 N -0.309 5.309 23 C 0.136 3.864 24 C -0.043 4.043 25 C -0.109 4.109 26 C -0.133 4.133 27 C -0.105 4.105 28 C -0.134 4.134 29 C -0.068 4.068 30 C -0.097 4.097 31 C -0.191 4.191 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.120 0.880 35 H 0.151 0.849 36 H 0.159 0.841 37 H 0.421 0.579 38 H 0.224 0.776 39 H 0.027 0.973 40 H 0.072 0.928 41 H 0.273 0.727 42 H 0.111 0.889 43 H 0.148 0.852 44 H 0.155 0.845 45 H 0.143 0.857 46 H 0.129 0.871 47 H 0.120 0.880 48 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.902 -19.620 -1.885 24.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.054 3.946 4 C -0.155 4.155 5 C -0.122 4.122 6 C 0.011 3.989 7 N -0.305 5.305 8 C 0.394 3.606 9 O -0.423 6.423 10 C -0.336 4.336 11 C -0.037 4.037 12 N -0.108 5.108 13 C 0.146 3.854 14 C -0.587 4.587 15 H 0.068 0.932 16 C -0.177 4.177 17 N -0.554 5.554 18 Si 0.790 3.210 19 H -0.202 1.202 20 H -0.195 1.195 21 H -0.199 1.199 22 N -0.129 5.129 23 C -0.032 4.032 24 C -0.045 4.045 25 C -0.128 4.128 26 C -0.150 4.150 27 C -0.124 4.124 28 C -0.152 4.152 29 C -0.088 4.088 30 C -0.117 4.117 31 C -0.210 4.210 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.138 0.862 35 H 0.169 0.831 36 H 0.176 0.824 37 H 0.259 0.741 38 H 0.240 0.760 39 H 0.045 0.955 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.130 0.870 43 H 0.166 0.834 44 H 0.173 0.827 45 H 0.161 0.839 46 H 0.146 0.854 47 H 0.138 0.862 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.916 -18.412 -2.209 23.798 hybrid contribution 0.826 0.403 0.118 0.926 sum -14.090 -18.009 -2.092 22.961 Atomic orbital electron populations 1.23304 0.76827 1.05472 1.01979 1.86044 1.23108 1.26566 1.88956 1.19180 0.92863 0.84341 0.98263 1.20474 0.91353 0.98735 1.04982 1.20967 1.01013 0.89515 1.00658 1.17787 0.91926 0.84985 1.04155 1.43173 1.25988 1.07403 1.53968 1.17113 0.83100 0.82678 0.77698 1.90715 1.25821 1.84653 1.41062 1.21018 1.03061 0.94204 1.15288 1.23653 0.96059 0.86632 0.97379 1.49007 1.20487 1.06991 1.34278 1.19553 0.80498 0.91887 0.93448 1.21322 1.13136 1.30706 0.93548 0.93170 1.25624 0.97455 0.96474 0.98149 1.69960 1.27168 1.39782 1.18462 0.85436 0.77955 0.78700 0.78897 1.20170 1.19497 1.19881 1.77423 1.00599 1.23046 1.11876 1.22253 0.94497 0.90030 0.96372 1.17913 0.92729 0.96366 0.97483 1.21311 0.95708 0.96070 0.99742 1.21308 0.96645 1.00521 0.96562 1.21593 0.99959 0.92757 0.98057 1.21343 0.95131 0.98992 0.99745 1.21530 0.97319 0.96790 0.93144 1.20957 0.93581 0.98017 0.99145 1.21241 1.00907 0.91318 1.07533 0.91990 0.92240 0.86168 0.83085 0.82376 0.74054 0.75980 0.95477 0.91074 0.91740 0.87038 0.83412 0.82687 0.83890 0.85360 0.86199 0.83954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.32 16 2 O -0.33 -6.11 10.50 -93.22 -0.98 -7.09 16 3 C 0.10 2.00 6.69 22.50 0.15 2.15 16 4 C -0.14 -2.49 9.98 22.35 0.22 -2.26 16 5 C -0.10 -1.84 9.96 22.38 0.22 -1.61 16 6 C 0.11 2.41 6.28 38.12 0.24 2.65 16 7 N -0.66 -15.18 5.33 -306.45 -1.63 -16.81 16 8 C 0.60 18.49 7.41 86.62 0.64 19.13 16 9 O -0.54 -18.68 10.13 -4.15 -0.04 -18.72 16 10 C -0.32 -11.11 6.26 -18.79 -0.12 -11.23 16 11 C 0.12 3.80 10.89 84.27 0.92 4.72 16 12 N -0.33 -14.20 3.62 -350.17 -1.27 -15.47 16 13 C 0.26 12.60 6.21 85.63 0.53 13.13 16 14 C -0.55 -29.58 9.20 25.60 0.24 -29.34 16 15 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 16 C 0.02 1.28 5.46 84.65 0.46 1.75 16 17 N -0.92 -49.61 13.29 21.45 0.28 -49.33 16 18 Si 0.97 42.65 29.54 68.60 2.03 44.68 16 19 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 22 N -0.31 -14.22 12.27 -44.53 -0.55 -14.76 16 23 C 0.14 5.54 6.94 44.07 0.31 5.85 16 24 C -0.04 -1.59 5.73 -20.05 -0.11 -1.70 16 25 C -0.11 -3.66 9.76 22.49 0.22 -3.44 16 26 C -0.13 -3.45 10.03 22.24 0.22 -3.23 16 27 C -0.11 -2.44 10.04 22.31 0.22 -2.22 16 28 C -0.13 -3.56 10.03 22.24 0.22 -3.34 16 29 C -0.07 -2.28 7.77 22.49 0.17 -2.11 16 30 C -0.10 -2.41 8.65 22.38 0.19 -2.21 16 31 C -0.19 -4.01 9.03 22.35 0.20 -3.81 16 32 H 0.06 0.59 7.66 -2.39 -0.02 0.57 16 33 H 0.06 0.61 7.66 -2.38 -0.02 0.59 16 34 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 36 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 37 H 0.42 7.01 7.79 -92.71 -0.72 6.29 16 38 H 0.22 4.74 7.49 -2.91 -0.02 4.72 16 39 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.07 3.18 8.05 -2.39 -0.02 3.16 16 41 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 42 H 0.11 3.89 8.06 -2.91 -0.02 3.87 16 43 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 44 H 0.16 2.40 8.06 -2.91 -0.02 2.37 16 45 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 46 H 0.13 4.54 5.64 -2.91 -0.02 4.52 16 47 H 0.12 3.44 6.42 -2.91 -0.02 3.42 16 48 H 0.14 2.42 6.29 -2.91 -0.02 2.40 16 Total: -1.00 -71.15 409.89 4.41 -66.74 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 0.30 Total: 26.56 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: 6.27 Total: -15.80 kcal Atomic # 7 Polarization: -93.21 SS G_CDS: -3.16 Total: -96.37 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -1.02 Total: -25.81 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -71.15 4.41 -66.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003355975.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.894 kcal (2) G-P(sol) polarization free energy of solvation -71.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds