Wall clock time and date at job start Fri Apr 10 2020 14:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35975 * 116.99485 * 2 1 4 4 C 1.38550 * 120.08553 * 0.27530 * 3 2 1 5 5 C 1.38255 * 120.01261 * 180.25266 * 4 3 2 6 6 C 1.38270 * 120.18383 * 359.75191 * 5 4 3 7 7 C 1.38200 * 120.16704 * 359.96835 * 6 5 4 8 8 C 1.38739 * 119.98139 * 0.02982 * 7 6 5 9 9 N 1.40067 * 120.09002 * 179.97438 * 8 7 6 10 10 C 1.34780 * 120.00266 * 335.18453 * 9 8 7 11 11 O 1.21638 * 119.99484 * 354.46602 * 10 9 8 12 12 C 1.47265 * 120.00393 * 174.46859 * 10 9 8 13 13 C 1.37971 * 126.80694 * 0.02562 * 12 10 9 14 14 N 1.34174 * 107.88588 * 179.97438 * 13 12 10 15 15 C 1.46496 * 125.16238 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46940 * 125.00341 * 15 14 13 17 17 H 1.08001 * 119.99793 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00365 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99594 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00271 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47006 * 60.00266 * 20 18 16 22 22 H 1.48495 * 109.47333 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47296 * 300.00555 * 20 18 16 24 24 N 1.39769 * 109.67062 * 359.77347 * 14 13 12 25 25 C 1.31362 * 109.08389 * 0.39370 * 24 14 13 26 26 C 1.48292 * 126.51370 * 179.88318 * 25 24 14 27 27 C 1.39382 * 120.12669 * 324.68799 * 26 25 24 28 28 C 1.38003 * 119.87377 * 179.97438 * 27 26 25 29 29 C 1.38322 * 120.12646 * 359.97438 * 28 27 26 30 30 C 1.38329 * 120.25396 * 0.02562 * 29 28 27 31 31 C 1.38001 * 120.12311 * 0.02562 * 30 29 28 32 32 H 1.09004 * 109.46857 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47104 * 299.99497 * 1 2 3 34 34 H 1.08997 * 109.47771 * 60.00079 * 1 2 3 35 35 H 1.07996 * 119.99301 * 359.97438 * 4 3 2 36 36 H 1.08002 * 119.90380 * 179.76805 * 5 4 3 37 37 H 1.08005 * 119.91707 * 180.02562 * 6 5 4 38 38 H 1.07998 * 120.01023 * 180.02562 * 7 6 5 39 39 H 0.97001 * 119.99932 * 155.17964 * 9 8 7 40 40 H 1.07997 * 126.05734 * 359.95000 * 13 12 10 41 41 H 1.08998 * 109.47268 * 245.00204 * 15 14 13 42 42 H 1.09000 * 109.47317 * 5.00640 * 15 14 13 43 43 H 0.97006 * 119.99352 * 179.97438 * 19 18 16 44 44 H 1.08005 * 120.05809 * 0.02562 * 27 26 25 45 45 H 1.08007 * 119.93376 * 179.97438 * 28 27 26 46 46 H 1.08006 * 119.87364 * 179.73744 * 29 28 27 47 47 H 1.08005 * 119.93539 * 179.97438 * 30 29 28 48 48 H 1.08010 * 120.06127 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2933 2.3746 0.0058 5 6 1.9223 3.6057 0.0005 6 6 3.3030 3.6809 -0.0054 7 6 4.0614 2.5256 -0.0053 8 6 3.4373 1.2866 0.0000 9 7 4.2038 0.1142 -0.0005 10 6 5.4573 0.1287 -0.4955 11 8 5.8873 1.1317 -1.0328 12 6 6.3062 -1.0696 -0.3859 13 6 5.9639 -2.2752 0.1911 14 7 7.0179 -3.0983 0.0820 15 6 7.0649 -4.4782 0.5716 16 6 7.4449 -5.3996 -0.5588 17 1 7.6329 -4.9974 -1.5434 18 6 7.5535 -6.7559 -0.3360 19 7 7.3250 -7.2456 0.8630 20 14 8.0237 -7.8980 -1.7374 21 1 9.3580 -7.5129 -2.2633 22 1 8.0715 -9.2968 -1.2412 23 1 7.0149 -7.7922 -2.8219 24 7 8.0624 -2.4407 -0.5738 25 6 7.6824 -1.2184 -0.8688 26 6 8.4898 -0.1869 -1.5639 27 6 9.8641 -0.1091 -1.3446 28 6 10.6105 0.8526 -1.9946 29 6 9.9975 1.7378 -2.8628 30 6 8.6340 1.6653 -3.0844 31 6 7.8774 0.7085 -2.4390 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 0.2147 2.3195 0.0098 36 1 1.3337 4.5112 0.0012 37 1 3.7900 4.6450 -0.0091 38 1 5.1396 2.5873 -0.0095 39 1 3.8324 -0.7082 0.3555 40 1 5.0157 -2.5140 0.6497 41 1 7.8049 -4.5561 1.3681 42 1 6.0852 -4.7607 0.9569 43 1 7.4010 -8.1999 1.0197 44 1 10.3439 -0.8006 -0.6678 45 1 11.6755 0.9140 -1.8251 46 1 10.5850 2.4916 -3.3662 47 1 8.1606 2.3594 -3.7630 48 1 6.8129 0.6525 -2.6131 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004510911.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:55 Heat of formation + Delta-G solvation = 46.318735 kcal Electronic energy + Delta-G solvation = -33235.068634 eV Core-core repulsion = 28835.486400 eV Total energy + Delta-G solvation = -4399.582235 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 377.153 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.28769 -41.46368 -40.04951 -39.68601 -38.08852 -35.81647 -35.71843 -33.99977 -32.26254 -31.74010 -31.42582 -31.03748 -30.19055 -28.78326 -27.99617 -25.54403 -24.90781 -23.69044 -23.37073 -23.07065 -22.58711 -21.01207 -20.70336 -19.58636 -18.78544 -18.57617 -17.85603 -17.73781 -17.22175 -16.82591 -16.56176 -16.51014 -16.33685 -15.99886 -15.72496 -15.58688 -15.50423 -15.26385 -14.79715 -14.67761 -14.39208 -14.18107 -14.13844 -14.11734 -13.67215 -13.56159 -13.43958 -13.05175 -12.96686 -12.76978 -12.55340 -12.34450 -12.25942 -12.07791 -12.06129 -11.97098 -11.76764 -11.64258 -11.47242 -10.84033 -10.74390 -10.62791 -9.81891 -9.72151 -9.49589 -9.22789 -8.70190 -8.38996 -6.52264 0.05211 0.28354 0.47624 0.60436 0.72163 1.35283 1.36938 1.39554 1.46782 1.60938 2.05558 2.30737 2.34625 2.38617 2.91477 2.94078 3.01294 3.37284 3.57024 3.89751 4.02025 4.06431 4.09359 4.18699 4.22333 4.34016 4.36435 4.38670 4.45436 4.47521 4.54492 4.62993 4.66190 4.71718 4.79677 4.85157 4.88231 4.91138 5.05180 5.19790 5.24566 5.32720 5.37893 5.50222 5.54677 5.64259 5.64835 5.70256 5.70407 5.80219 5.90048 5.98310 6.15002 6.42954 6.46812 6.55071 6.75666 7.17230 7.18217 8.68962 Molecular weight = 377.15amu Principal moments of inertia in cm(-1) A = 0.006683 B = 0.002986 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4188.840174 B = 9374.633930 C =12936.977145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.337 6.337 3 C 0.086 3.914 4 C -0.188 4.188 5 C -0.099 4.099 6 C -0.140 4.140 7 C -0.115 4.115 8 C 0.105 3.895 9 N -0.655 5.655 10 C 0.603 3.397 11 O -0.538 6.538 12 C -0.320 4.320 13 C 0.114 3.886 14 N -0.331 5.331 15 C 0.265 3.735 16 C -0.552 4.552 17 H 0.051 0.949 18 C 0.025 3.975 19 N -0.916 5.916 20 Si 0.966 3.034 21 H -0.277 1.277 22 H -0.271 1.271 23 H -0.269 1.269 24 N -0.307 5.307 25 C 0.138 3.862 26 C -0.043 4.043 27 C -0.108 4.108 28 C -0.132 4.132 29 C -0.104 4.104 30 C -0.133 4.133 31 C -0.069 4.069 32 H 0.113 0.887 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.143 0.857 38 H 0.134 0.866 39 H 0.418 0.582 40 H 0.217 0.783 41 H 0.028 0.972 42 H 0.069 0.931 43 H 0.274 0.726 44 H 0.111 0.889 45 H 0.149 0.851 46 H 0.156 0.844 47 H 0.145 0.855 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.201 21.374 -1.657 24.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.252 6.252 3 C 0.039 3.961 4 C -0.207 4.207 5 C -0.117 4.117 6 C -0.158 4.158 7 C -0.135 4.135 8 C 0.010 3.990 9 N -0.299 5.299 10 C 0.394 3.606 11 O -0.418 6.418 12 C -0.336 4.336 13 C -0.039 4.039 14 N -0.107 5.107 15 C 0.147 3.853 16 C -0.590 4.590 17 H 0.069 0.931 18 C -0.176 4.176 19 N -0.554 5.554 20 Si 0.790 3.210 21 H -0.202 1.202 22 H -0.196 1.196 23 H -0.194 1.194 24 N -0.127 5.127 25 C -0.029 4.029 26 C -0.046 4.046 27 C -0.128 4.128 28 C -0.150 4.150 29 C -0.123 4.123 30 C -0.151 4.151 31 C -0.088 4.088 32 H 0.131 0.869 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.175 0.825 36 H 0.173 0.827 37 H 0.161 0.839 38 H 0.152 0.848 39 H 0.255 0.745 40 H 0.234 0.766 41 H 0.046 0.954 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.129 0.871 45 H 0.166 0.834 46 H 0.174 0.826 47 H 0.162 0.838 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.835 20.557 -1.873 23.313 hybrid contribution -0.662 -1.122 0.028 1.303 sum -11.497 19.435 -1.845 22.656 Atomic orbital electron populations 1.23322 0.76184 1.05399 1.02397 1.86003 1.23641 1.26362 1.89159 1.18849 0.89969 0.86100 1.01211 1.21380 1.01082 0.91211 1.07016 1.21289 0.94348 0.97989 0.98121 1.21247 0.94373 0.98145 1.02069 1.21341 1.01492 0.90634 1.00052 1.17374 0.87623 0.87130 1.06875 1.43084 1.13537 1.11986 1.61250 1.17103 0.80440 0.86378 0.76669 1.90661 1.73185 1.34157 1.43778 1.21016 0.96536 0.96245 1.19757 1.23573 0.94476 0.89063 0.96790 1.49008 1.08645 1.12920 1.40102 1.19549 0.99378 0.71603 0.94809 1.21304 1.49481 0.92258 0.95939 0.93113 1.25638 0.94305 0.99111 0.98571 1.69966 1.48584 1.14726 1.22135 0.85482 0.78861 0.77653 0.78980 1.20216 1.19582 1.19410 1.77411 1.12831 1.06255 1.16237 1.22262 0.92294 0.91570 0.96784 1.17907 0.92697 0.94941 0.99006 1.21306 0.92564 0.98888 1.00005 1.21307 1.00867 0.95328 0.97493 1.21598 0.94715 0.98764 0.97181 1.21346 0.94500 0.98717 1.00515 1.21529 1.00463 0.93213 0.93622 0.86872 0.91221 0.91682 0.82525 0.82693 0.83897 0.84836 0.74496 0.76638 0.95376 0.91343 0.91693 0.87053 0.83359 0.82588 0.83756 0.85460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -6.89 9.92 -93.26 -0.92 -7.81 16 3 C 0.09 1.90 6.70 22.60 0.15 2.05 16 4 C -0.19 -3.13 9.04 22.35 0.20 -2.93 16 5 C -0.10 -1.55 10.04 22.28 0.22 -1.33 16 6 C -0.14 -2.74 10.04 22.27 0.22 -2.52 16 7 C -0.11 -3.00 8.72 22.38 0.20 -2.80 16 8 C 0.10 2.78 6.45 38.20 0.25 3.03 16 9 N -0.65 -18.20 5.27 -306.19 -1.61 -19.82 16 10 C 0.60 20.15 7.48 86.62 0.65 20.80 16 11 O -0.54 -19.25 9.60 -4.15 -0.04 -19.28 16 12 C -0.32 -11.88 6.26 -18.78 -0.12 -12.00 16 13 C 0.11 4.08 10.89 84.27 0.92 4.99 16 14 N -0.33 -14.80 3.62 -350.17 -1.27 -16.06 16 15 C 0.26 13.04 6.21 85.63 0.53 13.58 16 16 C -0.55 -30.38 9.20 25.60 0.24 -30.15 16 17 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 18 C 0.03 1.35 5.46 84.65 0.46 1.81 16 19 N -0.92 -50.45 13.29 21.45 0.28 -50.16 16 20 Si 0.97 43.17 29.54 68.60 2.03 45.20 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 N -0.31 -14.54 12.27 -44.52 -0.55 -15.08 16 25 C 0.14 5.84 6.94 44.08 0.31 6.14 16 26 C -0.04 -1.65 5.74 -20.05 -0.12 -1.76 16 27 C -0.11 -3.69 9.76 22.49 0.22 -3.47 16 28 C -0.13 -3.48 10.03 22.23 0.22 -3.26 16 29 C -0.10 -2.44 10.04 22.31 0.22 -2.21 16 30 C -0.13 -3.56 10.03 22.24 0.22 -3.34 16 31 C -0.07 -2.34 7.77 22.49 0.17 -2.17 16 32 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.07 0.58 7.65 -2.39 -0.02 0.56 16 34 H 0.06 0.60 7.67 -2.39 -0.02 0.58 16 35 H 0.16 1.63 6.30 -2.91 -0.02 1.62 16 36 H 0.16 1.40 8.06 -2.91 -0.02 1.37 16 37 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 38 H 0.13 4.03 5.79 -2.91 -0.02 4.01 16 39 H 0.42 10.02 7.32 -92.71 -0.68 9.34 16 40 H 0.22 5.52 7.49 -2.91 -0.02 5.50 16 41 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.07 3.20 8.05 -2.39 -0.02 3.18 16 43 H 0.27 14.18 8.31 -92.70 -0.77 13.41 16 44 H 0.11 3.95 8.06 -2.91 -0.02 3.93 16 45 H 0.15 2.97 8.06 -2.91 -0.02 2.94 16 46 H 0.16 2.42 8.06 -2.91 -0.02 2.39 16 47 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 48 H 0.13 4.62 5.64 -2.91 -0.02 4.60 16 Total: -1.00 -71.36 408.10 4.55 -66.81 By element: Atomic # 1 Polarization: 30.06 SS G_CDS: 0.34 Total: 30.40 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: 6.29 Total: -14.18 kcal Atomic # 7 Polarization: -97.99 SS G_CDS: -3.14 Total: -101.13 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.96 Total: -27.10 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -71.36 4.55 -66.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004510911.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.129 kcal (2) G-P(sol) polarization free energy of solvation -71.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds