Wall clock time and date at job start Fri Apr 10 2020 15:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35949 * 116.99955 * 2 1 4 4 C 1.38064 * 119.99936 * 359.97392 * 3 2 1 5 5 C 1.40005 * 119.83683 * 180.02562 * 4 3 2 6 6 C 1.46913 * 120.08099 * 180.02562 * 5 4 3 7 7 C 1.35146 * 120.00024 * 226.70339 * 6 5 4 8 8 C 1.41772 * 119.99849 * 11.03609 * 7 6 5 9 9 O 1.21653 * 120.00117 * 7.11039 * 8 7 6 10 10 O 1.34938 * 119.99758 * 187.10783 * 8 7 6 11 11 C 1.42903 * 117.00139 * 179.97438 * 10 8 7 12 12 C 1.50694 * 109.47439 * 180.02562 * 11 10 8 13 13 O 1.21276 * 119.99987 * 359.97438 * 12 11 10 14 14 N 1.34778 * 120.00058 * 180.02562 * 12 11 10 15 15 C 1.46497 * 119.99966 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.46865 * 60.00026 * 15 14 12 17 17 C 1.53004 * 109.47070 * 179.97438 * 15 14 12 18 18 C 1.53001 * 109.47479 * 300.00205 * 15 14 12 19 19 C 1.40053 * 119.83737 * 0.02562 * 5 4 3 20 20 C 1.37630 * 120.00403 * 0.02562 * 19 5 4 21 21 C 1.39075 * 120.16064 * 359.97438 * 20 19 5 22 22 O 1.35606 * 119.92179 * 180.02562 * 21 20 19 23 23 C 1.34757 * 116.99852 * 354.16287 * 22 21 20 24 24 H 1.07999 * 120.00066 * 5.06866 * 23 22 21 25 25 C 1.38709 * 120.00063 * 185.07364 * 23 22 21 26 26 N 1.31518 * 120.00146 * 359.97438 * 25 23 22 27 27 Si 1.86793 * 120.00305 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.47500 * 89.99770 * 27 25 23 29 29 H 1.48504 * 109.47576 * 209.99709 * 27 25 23 30 30 H 1.48503 * 109.47121 * 330.00055 * 27 25 23 31 31 H 1.08998 * 109.46770 * 60.00381 * 1 2 3 32 32 H 1.09001 * 109.46911 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46894 * 300.00163 * 1 2 3 34 34 H 1.07996 * 120.08386 * 0.02562 * 4 3 2 35 35 H 1.07998 * 120.00419 * 46.70661 * 6 5 4 36 36 H 1.08000 * 119.99944 * 191.03385 * 7 6 5 37 37 H 1.08996 * 109.47037 * 300.00727 * 11 10 8 38 38 H 1.09006 * 109.46656 * 59.99611 * 11 10 8 39 39 H 0.96997 * 120.00012 * 0.02562 * 14 12 11 40 40 H 1.09004 * 109.47170 * 60.00177 * 16 15 14 41 41 H 1.09004 * 109.46984 * 179.97438 * 16 15 14 42 42 H 1.08996 * 109.47615 * 299.99657 * 16 15 14 43 43 H 1.09000 * 109.47171 * 60.00341 * 17 15 14 44 44 H 1.09001 * 109.46641 * 180.02562 * 17 15 14 45 45 H 1.08999 * 109.46630 * 299.99943 * 17 15 14 46 46 H 1.08997 * 109.46750 * 59.99593 * 18 15 14 47 47 H 1.08996 * 109.47197 * 179.97438 * 18 15 14 48 48 H 1.09006 * 109.46580 * 299.99784 * 18 15 14 49 49 H 1.08007 * 120.00090 * 180.27765 * 19 5 4 50 50 H 1.07995 * 119.92701 * 179.97438 * 20 19 5 51 51 H 0.96996 * 120.00624 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2942 2.3692 -0.0005 5 6 1.9334 3.6149 -0.0011 6 6 1.1385 4.8504 -0.0011 7 6 1.4475 5.8527 -0.8533 8 6 2.3777 5.6316 -1.9001 9 8 2.7995 4.5105 -2.1123 10 8 2.7952 6.6648 -2.6610 11 6 3.7336 6.3696 -3.6976 12 6 4.0819 7.6364 -4.4357 13 8 3.5760 8.6884 -4.1068 14 7 4.9548 7.6001 -5.4619 15 6 5.2929 8.8316 -6.1798 16 6 5.9097 9.8370 -5.2053 17 6 6.2977 8.5155 -7.2895 18 6 4.0251 9.4285 -6.7939 19 6 3.3324 3.6802 -0.0016 20 6 4.0755 2.5218 -0.0021 21 6 3.4407 1.2844 -0.0016 22 8 4.1776 0.1461 -0.0016 23 6 5.5127 0.2816 -0.1242 24 1 5.9569 1.2660 -0.1344 25 6 6.3165 -0.8431 -0.2375 26 7 5.7757 -2.0419 -0.2248 27 14 8.1671 -0.6553 -0.4083 28 1 8.7907 -0.6506 0.9395 29 1 8.7089 -1.7886 -1.2003 30 1 8.4733 0.6229 -1.0996 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 0.2157 2.3142 -0.0006 35 1 0.3072 4.9577 0.6799 36 1 0.9858 6.8221 -0.7369 37 1 4.6367 5.9446 -3.2598 38 1 3.2945 5.6531 -4.3918 39 1 5.3586 6.7586 -5.7256 40 1 6.8130 9.4117 -4.7678 41 1 6.1617 10.7531 -5.7395 42 1 5.1942 10.0623 -4.4145 43 1 5.8588 7.7990 -7.9839 44 1 6.5496 9.4318 -7.8233 45 1 7.2009 8.0905 -6.8515 46 1 3.3097 9.6537 -6.0031 47 1 4.2767 10.3450 -7.3277 48 1 3.5858 8.7122 -7.4882 49 1 3.8282 4.6398 0.0025 50 1 5.1542 2.5736 -0.0030 51 1 6.3378 -2.8285 -0.3036 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006459261.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:27 Heat of formation + Delta-G solvation = -123.120443 kcal Electronic energy + Delta-G solvation = -34348.683228 eV Core-core repulsion = 29602.151888 eV Total energy + Delta-G solvation = -4746.531340 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 377.176 amu Computer time = 3.57 seconds Orbital eigenvalues (eV) -40.80893 -40.09779 -39.44682 -37.53711 -37.32556 -36.52806 -35.58617 -33.19188 -32.60636 -32.22455 -29.58766 -29.18121 -28.21554 -27.74899 -27.55227 -26.51759 -25.45874 -24.02243 -21.79466 -21.57040 -21.18439 -19.95178 -19.41731 -18.11662 -18.03023 -17.52802 -17.11298 -16.73876 -16.17998 -16.12190 -15.61251 -15.17270 -15.11175 -15.06679 -14.61308 -14.40336 -14.26635 -13.90690 -13.88863 -13.71795 -13.48783 -13.39704 -13.13780 -12.96962 -12.82128 -12.46815 -12.40999 -12.37746 -12.27673 -11.92168 -11.75050 -11.57093 -11.48257 -11.42963 -11.35951 -11.13439 -11.00615 -10.79005 -10.60896 -10.55589 -10.39709 -9.93125 -9.76029 -9.45999 -9.40661 -9.29740 -8.77507 -7.84999 -6.76006 -6.50093 -4.02320 0.90373 2.20173 2.33832 2.35219 2.48553 3.10011 3.10722 3.15792 3.30665 3.38971 3.91701 4.04968 4.27341 4.52214 4.54764 4.57004 4.69971 4.98315 4.99815 5.01218 5.09319 5.13709 5.15567 5.18702 5.26783 5.38412 5.42946 5.49392 5.50217 5.53966 5.58332 5.63113 5.65778 5.67210 5.72394 5.86824 5.97803 6.05851 6.08199 6.19871 6.25588 6.31867 6.40720 6.59153 6.63585 6.93151 7.05263 7.18814 7.20462 7.33903 7.61112 7.91166 7.94263 8.08235 8.20322 8.93715 9.65144 10.66558 Molecular weight = 377.18amu Principal moments of inertia in cm(-1) A = 0.007729 B = 0.002316 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3621.916643 B =12089.367431 C =14878.473842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.304 6.304 3 C 0.042 3.958 4 C -0.132 4.132 5 C -0.167 4.167 6 C 0.049 3.951 7 C -0.247 4.247 8 C 0.490 3.510 9 O -0.481 6.481 10 O -0.338 6.338 11 C 0.048 3.952 12 C 0.520 3.480 13 O -0.514 6.514 14 N -0.724 5.724 15 C 0.170 3.830 16 C -0.166 4.166 17 C -0.156 4.156 18 C -0.165 4.165 19 C -0.019 4.019 20 C -0.220 4.220 21 C 0.153 3.847 22 O -0.154 6.154 23 C -0.389 4.389 24 H 0.094 0.906 25 C 0.040 3.960 26 N -0.851 5.851 27 Si 0.942 3.058 28 H -0.272 1.272 29 H -0.277 1.277 30 H -0.266 1.266 31 H 0.045 0.955 32 H 0.090 0.910 33 H 0.045 0.955 34 H 0.119 0.881 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.402 0.598 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.079 0.921 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.079 0.921 47 H 0.063 0.937 48 H 0.054 0.946 49 H 0.100 0.900 50 H 0.133 0.867 51 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.029 18.692 -9.128 21.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.219 6.219 3 C -0.002 4.002 4 C -0.151 4.151 5 C -0.168 4.168 6 C 0.031 3.969 7 C -0.266 4.266 8 C 0.337 3.663 9 O -0.369 6.369 10 O -0.255 6.255 11 C -0.030 4.030 12 C 0.306 3.694 13 O -0.389 6.389 14 N -0.378 5.378 15 C 0.085 3.915 16 C -0.224 4.224 17 C -0.213 4.213 18 C -0.223 4.223 19 C -0.037 4.037 20 C -0.240 4.240 21 C 0.097 3.903 22 O -0.056 6.056 23 C -0.465 4.465 24 H 0.112 0.888 25 C -0.166 4.166 26 N -0.484 5.484 27 Si 0.767 3.233 28 H -0.198 1.198 29 H -0.202 1.202 30 H -0.191 1.191 31 H 0.063 0.937 32 H 0.108 0.892 33 H 0.063 0.937 34 H 0.137 0.863 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.237 0.763 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.082 0.918 46 H 0.098 0.902 47 H 0.082 0.918 48 H 0.074 0.926 49 H 0.118 0.882 50 H 0.150 0.850 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.126 18.417 -8.977 20.900 hybrid contribution 0.992 -0.194 -0.429 1.098 sum -3.134 18.224 -9.406 20.746 Atomic orbital electron populations 1.22868 0.80537 1.02838 1.00153 1.86228 1.19259 1.26372 1.89994 1.17925 0.89336 0.84403 1.08573 1.20644 0.98090 0.90770 1.05623 1.18058 0.92886 0.91328 1.14572 1.22499 0.92771 0.90585 0.91089 1.21072 1.05107 1.01874 0.98588 1.20266 0.80860 0.82600 0.82542 1.91101 1.54295 1.23097 1.68450 1.86257 1.56736 1.39508 1.42986 1.22163 0.94604 0.95583 0.90639 1.20150 0.78940 0.90236 0.80095 1.90668 1.51426 1.31445 1.65344 1.46043 1.46299 1.11515 1.33991 1.20358 0.95121 0.84360 0.91652 1.22245 1.01323 0.98392 1.00403 1.22099 0.98613 1.02890 0.97742 1.22241 0.97879 1.00668 1.01529 1.20516 0.91909 0.96662 0.94638 1.20718 1.00352 0.90793 1.12095 1.18817 0.88257 0.87549 0.95693 1.83987 1.19582 1.25748 1.76273 1.21443 0.78609 0.94859 1.51565 0.88832 1.25350 1.00599 0.94198 0.96407 1.70047 1.36347 0.97691 1.44313 0.85695 0.80365 0.78524 0.78765 1.19756 1.20156 1.19081 0.93682 0.89161 0.93659 0.86314 0.84929 0.84628 0.88504 0.88652 0.76312 0.92580 0.91815 0.90212 0.91799 0.90728 0.91752 0.90223 0.91810 0.92640 0.88221 0.84960 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.81 101.05 0.99 1.48 16 2 O -0.30 -6.73 10.28 -34.19 -0.35 -7.08 16 3 C 0.04 0.95 6.70 -39.12 -0.26 0.69 16 4 C -0.13 -2.44 8.78 -38.98 -0.34 -2.78 16 5 C -0.17 -2.95 4.36 -105.04 -0.46 -3.41 16 6 C 0.05 0.66 9.78 -37.17 -0.36 0.29 16 7 C -0.25 -3.27 9.86 -39.33 -0.39 -3.66 16 8 C 0.49 7.64 6.86 32.08 0.22 7.86 16 9 O -0.48 -8.91 12.00 -19.38 -0.23 -9.14 16 10 O -0.34 -4.96 9.64 -47.91 -0.46 -5.42 16 11 C 0.05 0.58 5.86 36.00 0.21 0.79 16 12 C 0.52 6.02 7.33 -10.99 -0.08 5.94 16 13 O -0.51 -7.56 12.71 -14.35 -0.18 -7.75 16 14 N -0.72 -6.06 5.11 -47.61 -0.24 -6.30 16 15 C 0.17 1.32 1.06 -131.82 -0.14 1.18 16 16 C -0.17 -1.41 8.40 37.16 0.31 -1.09 16 17 C -0.16 -0.83 8.59 37.16 0.32 -0.51 16 18 C -0.17 -1.37 8.40 37.16 0.31 -1.06 16 19 C -0.02 -0.36 6.72 -39.12 -0.26 -0.62 16 20 C -0.22 -4.92 9.14 -39.49 -0.36 -5.28 16 21 C 0.15 3.83 6.67 -38.75 -0.26 3.57 16 22 O -0.15 -4.51 9.52 -13.91 -0.13 -4.64 16 23 C -0.39 -10.89 9.48 30.91 0.29 -10.59 16 24 H 0.09 2.41 5.19 -52.49 -0.27 2.14 16 25 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 26 N -0.85 -24.94 13.67 55.48 0.76 -24.18 16 27 Si 0.94 20.27 29.55 -169.99 -5.02 15.25 16 28 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 29 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 30 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 31 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 32 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.04 0.59 7.66 -51.93 -0.40 0.20 16 34 H 0.12 1.79 6.28 -52.49 -0.33 1.46 16 35 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.10 1.09 8.13 -51.93 -0.42 0.67 16 38 H 0.10 1.04 8.13 -51.93 -0.42 0.62 16 39 H 0.40 2.41 8.47 -40.82 -0.35 2.07 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.89 6.17 -51.93 -0.32 0.57 16 43 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.08 0.88 6.17 -51.93 -0.32 0.56 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.10 1.76 7.32 -52.48 -0.38 1.37 16 50 H 0.13 2.92 5.62 -52.49 -0.29 2.63 16 51 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 423.41 15.07 6.38 6.38 Total: -1.00 -35.96 423.41 -7.11 -43.07 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -7.27 Total: 6.01 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -0.35 Total: -6.21 kcal Atomic # 7 Polarization: -31.00 SS G_CDS: 0.52 Total: -30.48 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -1.36 Total: -34.03 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -35.96 -7.11 -43.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006459261.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.046 kcal (2) G-P(sol) polarization free energy of solvation -35.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.57 seconds