Wall clock time and date at job start Fri Apr 10 2020 15:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35949 * 116.99955 * 2 1 4 4 C 1.38064 * 119.99936 * 359.97392 * 3 2 1 5 5 C 1.40005 * 119.83683 * 180.02562 * 4 3 2 6 6 C 1.46913 * 120.08099 * 180.02562 * 5 4 3 7 7 C 1.35146 * 120.00024 * 226.70339 * 6 5 4 8 8 C 1.41772 * 119.99849 * 11.03609 * 7 6 5 9 9 O 1.21653 * 120.00117 * 7.11039 * 8 7 6 10 10 O 1.34938 * 119.99758 * 187.10783 * 8 7 6 11 11 C 1.42903 * 117.00139 * 179.97438 * 10 8 7 12 12 C 1.50694 * 109.47439 * 180.02562 * 11 10 8 13 13 O 1.21276 * 119.99987 * 359.97438 * 12 11 10 14 14 N 1.34778 * 120.00058 * 180.02562 * 12 11 10 15 15 C 1.46497 * 119.99966 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.46865 * 60.00026 * 15 14 12 17 17 C 1.53004 * 109.47070 * 179.97438 * 15 14 12 18 18 C 1.53001 * 109.47479 * 300.00205 * 15 14 12 19 19 C 1.40053 * 119.83737 * 0.02562 * 5 4 3 20 20 C 1.37630 * 120.00403 * 0.02562 * 19 5 4 21 21 C 1.39075 * 120.16064 * 359.97438 * 20 19 5 22 22 O 1.35606 * 119.92179 * 180.02562 * 21 20 19 23 23 C 1.34757 * 116.99852 * 354.16287 * 22 21 20 24 24 H 1.07999 * 120.00066 * 5.06866 * 23 22 21 25 25 C 1.38709 * 120.00063 * 185.07364 * 23 22 21 26 26 N 1.31518 * 120.00146 * 359.97438 * 25 23 22 27 27 Si 1.86793 * 120.00305 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.47500 * 89.99770 * 27 25 23 29 29 H 1.48504 * 109.47576 * 209.99709 * 27 25 23 30 30 H 1.48503 * 109.47121 * 330.00055 * 27 25 23 31 31 H 1.08998 * 109.46770 * 60.00381 * 1 2 3 32 32 H 1.09001 * 109.46911 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46894 * 300.00163 * 1 2 3 34 34 H 1.07996 * 120.08386 * 0.02562 * 4 3 2 35 35 H 1.07998 * 120.00419 * 46.70661 * 6 5 4 36 36 H 1.08000 * 119.99944 * 191.03385 * 7 6 5 37 37 H 1.08996 * 109.47037 * 300.00727 * 11 10 8 38 38 H 1.09006 * 109.46656 * 59.99611 * 11 10 8 39 39 H 0.96997 * 120.00012 * 0.02562 * 14 12 11 40 40 H 1.09004 * 109.47170 * 60.00177 * 16 15 14 41 41 H 1.09004 * 109.46984 * 179.97438 * 16 15 14 42 42 H 1.08996 * 109.47615 * 299.99657 * 16 15 14 43 43 H 1.09000 * 109.47171 * 60.00341 * 17 15 14 44 44 H 1.09001 * 109.46641 * 180.02562 * 17 15 14 45 45 H 1.08999 * 109.46630 * 299.99943 * 17 15 14 46 46 H 1.08997 * 109.46750 * 59.99593 * 18 15 14 47 47 H 1.08996 * 109.47197 * 179.97438 * 18 15 14 48 48 H 1.09006 * 109.46580 * 299.99784 * 18 15 14 49 49 H 1.08007 * 120.00090 * 180.27765 * 19 5 4 50 50 H 1.07995 * 119.92701 * 179.97438 * 20 19 5 51 51 H 0.96996 * 120.00624 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2942 2.3692 -0.0005 5 6 1.9334 3.6149 -0.0011 6 6 1.1385 4.8504 -0.0011 7 6 1.4475 5.8527 -0.8533 8 6 2.3777 5.6316 -1.9001 9 8 2.7995 4.5105 -2.1123 10 8 2.7952 6.6648 -2.6610 11 6 3.7336 6.3696 -3.6976 12 6 4.0819 7.6364 -4.4357 13 8 3.5760 8.6884 -4.1068 14 7 4.9548 7.6001 -5.4619 15 6 5.2929 8.8316 -6.1798 16 6 5.9097 9.8370 -5.2053 17 6 6.2977 8.5155 -7.2895 18 6 4.0251 9.4285 -6.7939 19 6 3.3324 3.6802 -0.0016 20 6 4.0755 2.5218 -0.0021 21 6 3.4407 1.2844 -0.0016 22 8 4.1776 0.1461 -0.0016 23 6 5.5127 0.2816 -0.1242 24 1 5.9569 1.2660 -0.1344 25 6 6.3165 -0.8431 -0.2375 26 7 5.7757 -2.0419 -0.2248 27 14 8.1671 -0.6553 -0.4083 28 1 8.7907 -0.6506 0.9395 29 1 8.7089 -1.7886 -1.2003 30 1 8.4733 0.6229 -1.0996 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 0.2157 2.3142 -0.0006 35 1 0.3072 4.9577 0.6799 36 1 0.9858 6.8221 -0.7369 37 1 4.6367 5.9446 -3.2598 38 1 3.2945 5.6531 -4.3918 39 1 5.3586 6.7586 -5.7256 40 1 6.8130 9.4117 -4.7678 41 1 6.1617 10.7531 -5.7395 42 1 5.1942 10.0623 -4.4145 43 1 5.8588 7.7990 -7.9839 44 1 6.5496 9.4318 -7.8233 45 1 7.2009 8.0905 -6.8515 46 1 3.3097 9.6537 -6.0031 47 1 4.2767 10.3450 -7.3277 48 1 3.5858 8.7122 -7.4882 49 1 3.8282 4.6398 0.0025 50 1 5.1542 2.5736 -0.0030 51 1 6.3378 -2.8285 -0.3036 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006459261.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:20 Heat of formation + Delta-G solvation = -147.021626 kcal Electronic energy + Delta-G solvation = -34349.719661 eV Core-core repulsion = 29602.151888 eV Total energy + Delta-G solvation = -4747.567773 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 377.176 amu Computer time = 8.30 seconds Orbital eigenvalues (eV) -41.96126 -41.26700 -40.86395 -39.25090 -38.55133 -37.54560 -36.94274 -34.66209 -34.03538 -33.40561 -31.18161 -30.53170 -29.37154 -28.26908 -28.22224 -27.84987 -27.35750 -25.32413 -23.24173 -23.03783 -22.23070 -20.85669 -20.51650 -19.90086 -19.50816 -18.64343 -18.42836 -17.90666 -17.60893 -17.16249 -16.83993 -16.62639 -16.50391 -16.33926 -16.00803 -15.53847 -15.37742 -15.22274 -15.10021 -15.05106 -14.84674 -14.53927 -14.37133 -14.09369 -13.92642 -13.64648 -13.49505 -13.30987 -13.11999 -13.03551 -13.00668 -12.83670 -12.74922 -12.58592 -12.55596 -12.19637 -12.14886 -12.11237 -12.00749 -11.88509 -11.73208 -11.40675 -11.18594 -10.87358 -10.70420 -10.42023 -10.18451 -9.44816 -8.47614 -8.42945 -6.10462 -0.32266 0.58981 0.91201 1.33523 1.39838 1.43676 1.44179 1.51815 2.10512 2.17165 2.47201 2.61017 2.82366 3.13642 3.43658 3.51441 3.79996 3.89197 3.94052 4.00806 4.05785 4.07023 4.11176 4.17638 4.19087 4.34623 4.45690 4.53987 4.57116 4.67975 4.71018 4.72668 4.72958 4.73373 4.84748 4.92871 4.94696 4.97802 4.99379 5.09244 5.19940 5.20707 5.32595 5.37414 5.41133 5.44814 5.52354 5.55037 5.73246 5.95186 6.02655 6.44614 6.67477 6.85353 6.97101 7.12331 7.79978 8.76666 Molecular weight = 377.18amu Principal moments of inertia in cm(-1) A = 0.007729 B = 0.002316 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3621.916643 B =12089.367431 C =14878.473842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.347 6.347 3 C 0.030 3.970 4 C -0.128 4.128 5 C -0.134 4.134 6 C 0.047 3.953 7 C -0.227 4.227 8 C 0.486 3.514 9 O -0.518 6.518 10 O -0.343 6.343 11 C 0.044 3.956 12 C 0.522 3.478 13 O -0.549 6.549 14 N -0.710 5.710 15 C 0.164 3.836 16 C -0.163 4.163 17 C -0.150 4.150 18 C -0.162 4.162 19 C -0.031 4.031 20 C -0.220 4.220 21 C 0.099 3.901 22 O -0.217 6.217 23 C -0.414 4.414 24 H 0.100 0.900 25 C -0.023 4.023 26 N -0.916 5.916 27 Si 1.019 2.981 28 H -0.261 1.261 29 H -0.270 1.270 30 H -0.253 1.253 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.163 0.837 35 H 0.188 0.812 36 H 0.174 0.826 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.415 0.585 40 H 0.057 0.943 41 H 0.080 0.920 42 H 0.049 0.951 43 H 0.071 0.929 44 H 0.087 0.913 45 H 0.069 0.931 46 H 0.049 0.951 47 H 0.080 0.920 48 H 0.059 0.941 49 H 0.118 0.882 50 H 0.122 0.878 51 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.445 22.405 -9.962 25.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.262 6.262 3 C -0.014 4.014 4 C -0.147 4.147 5 C -0.135 4.135 6 C 0.029 3.971 7 C -0.245 4.245 8 C 0.334 3.666 9 O -0.409 6.409 10 O -0.260 6.260 11 C -0.034 4.034 12 C 0.307 3.693 13 O -0.426 6.426 14 N -0.364 5.364 15 C 0.080 3.920 16 C -0.221 4.221 17 C -0.207 4.207 18 C -0.220 4.220 19 C -0.049 4.049 20 C -0.239 4.239 21 C 0.048 3.952 22 O -0.123 6.123 23 C -0.490 4.490 24 H 0.118 0.882 25 C -0.220 4.220 26 N -0.554 5.554 27 Si 0.838 3.162 28 H -0.186 1.186 29 H -0.194 1.194 30 H -0.176 1.176 31 H 0.081 0.919 32 H 0.125 0.875 33 H 0.089 0.911 34 H 0.180 0.820 35 H 0.205 0.795 36 H 0.192 0.808 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.252 0.748 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.068 0.932 43 H 0.090 0.910 44 H 0.106 0.894 45 H 0.088 0.912 46 H 0.068 0.932 47 H 0.098 0.902 48 H 0.078 0.922 49 H 0.136 0.864 50 H 0.139 0.861 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.577 22.203 -9.833 24.915 hybrid contribution 1.032 -0.868 -0.269 1.375 sum -4.545 21.335 -10.101 24.039 Atomic orbital electron populations 1.23258 0.77138 1.04847 1.02090 1.86178 1.22968 1.26949 1.90113 1.18302 0.88892 0.85930 1.08307 1.21114 1.00029 0.89507 1.04013 1.18670 0.92717 0.93294 1.08826 1.22832 0.93633 0.87848 0.92740 1.21499 1.03045 1.03123 0.96881 1.20867 0.80667 0.82136 0.82886 1.91116 1.55831 1.24534 1.69394 1.86246 1.57061 1.39270 1.43395 1.22363 0.94468 0.96209 0.90393 1.20114 0.79169 0.89446 0.80530 1.90665 1.52988 1.32402 1.66564 1.46018 1.44990 1.12642 1.32788 1.20546 0.95586 0.83781 0.92123 1.22212 1.00496 0.99488 0.99923 1.22066 0.97920 1.03855 0.96857 1.22202 0.97430 1.01668 1.00713 1.20723 0.93008 0.96139 0.95053 1.20807 1.00268 0.91266 1.11567 1.19478 0.89803 0.87709 0.98198 1.83961 1.20005 1.27726 1.80583 1.21867 0.79180 0.95542 1.52412 0.88233 1.26634 1.06049 0.93505 0.95851 1.70200 1.38378 0.98690 1.48140 0.84590 0.73334 0.79017 0.79246 1.18629 1.19434 1.17636 0.91939 0.87489 0.91108 0.81998 0.79474 0.80839 0.87971 0.87676 0.74821 0.92386 0.90133 0.93173 0.91004 0.89399 0.91163 0.93166 0.90153 0.92218 0.86409 0.86052 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.81 113.37 1.11 1.72 16 2 O -0.35 -15.78 10.28 -79.00 -0.81 -16.59 16 3 C 0.03 1.39 6.70 22.57 0.15 1.54 16 4 C -0.13 -4.40 8.78 22.66 0.20 -4.20 16 5 C -0.13 -4.30 4.36 -20.14 -0.09 -4.39 16 6 C 0.05 0.99 9.78 23.83 0.23 1.22 16 7 C -0.23 -4.79 9.86 22.43 0.22 -4.56 16 8 C 0.49 13.66 6.86 68.69 0.47 14.13 16 9 O -0.52 -18.25 12.00 19.34 0.23 -18.02 16 10 O -0.34 -9.33 9.64 -52.08 -0.50 -9.84 16 11 C 0.04 0.99 5.86 71.23 0.42 1.41 16 12 C 0.52 11.60 7.33 87.65 0.64 12.24 16 13 O -0.55 -15.94 12.71 16.02 0.20 -15.74 16 14 N -0.71 -10.87 5.11 -422.93 -2.16 -13.03 16 15 C 0.16 2.26 1.06 3.61 0.00 2.27 16 16 C -0.16 -2.57 8.40 71.98 0.60 -1.97 16 17 C -0.15 -1.17 8.59 71.98 0.62 -0.55 16 18 C -0.16 -2.47 8.40 71.98 0.60 -1.87 16 19 C -0.03 -1.16 6.72 22.57 0.15 -1.01 16 20 C -0.22 -10.23 9.14 22.33 0.20 -10.02 16 21 C 0.10 5.30 6.67 22.81 0.15 5.45 16 22 O -0.22 -13.78 9.52 -6.44 -0.06 -13.84 16 23 C -0.41 -25.04 9.48 67.93 0.64 -24.40 16 24 H 0.10 5.54 5.19 -2.91 -0.02 5.52 16 25 C -0.02 -1.32 5.49 84.85 0.47 -0.85 16 26 N -0.92 -57.94 13.67 21.62 0.30 -57.64 16 27 Si 1.02 43.75 29.55 68.60 2.03 45.78 16 28 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 29 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 30 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16 31 H 0.06 1.55 7.66 -2.39 -0.02 1.53 16 32 H 0.11 2.65 8.14 -2.39 -0.02 2.64 16 33 H 0.07 1.65 7.66 -2.39 -0.02 1.63 16 34 H 0.16 4.09 6.28 -2.91 -0.02 4.07 16 35 H 0.19 2.08 8.06 -2.91 -0.02 2.05 16 36 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 37 H 0.10 2.21 8.13 -2.39 -0.02 2.19 16 38 H 0.11 2.17 8.13 -2.38 -0.02 2.15 16 39 H 0.41 4.23 8.47 -92.71 -0.79 3.44 16 40 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.08 0.96 8.14 -2.38 -0.02 0.95 16 42 H 0.05 1.11 6.17 -2.39 -0.01 1.10 16 43 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.05 1.09 6.17 -2.39 -0.01 1.07 16 47 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 49 H 0.12 3.95 7.32 -2.91 -0.02 3.92 16 50 H 0.12 5.73 5.62 -2.91 -0.02 5.72 16 51 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -89.20 423.41 6.22 -82.98 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: 0.19 Total: 29.79 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 6.81 Total: -13.85 kcal Atomic # 7 Polarization: -68.81 SS G_CDS: -1.86 Total: -70.68 kcal Atomic # 8 Polarization: -73.09 SS G_CDS: -0.94 Total: -74.03 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -89.20 6.22 -82.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006459261.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.040 kcal (2) G-P(sol) polarization free energy of solvation -89.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.30 seconds